Wall clock time and date at job start Tue Mar 31 2020 21:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35969 * 117.00414 * 2 1 4 4 C 1.38740 * 119.98246 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.01294 * 180.02562 * 4 3 2 6 6 C 1.38863 * 119.98573 * 359.97438 * 5 4 3 7 7 N 1.40118 * 120.01690 * 179.97438 * 6 5 4 8 8 C 1.34782 * 119.99746 * 334.72973 * 7 6 5 9 9 O 1.21294 * 119.99629 * 354.45036 * 8 7 6 10 10 C 1.50696 * 119.99602 * 174.44901 * 8 7 6 11 11 N 1.46905 * 109.46588 * 179.97438 * 10 8 7 12 12 C 1.46902 * 111.00180 * 293.95275 * 11 10 8 13 13 C 1.46900 * 110.99532 * 170.00196 * 11 10 8 14 14 H 1.08997 * 109.47868 * 59.99941 * 13 11 10 15 15 C 1.53007 * 109.47277 * 299.99763 * 13 11 10 16 16 C 1.50705 * 109.46870 * 179.97438 * 13 11 10 17 17 H 1.07994 * 119.99910 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99745 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00199 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99724 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47218 * 180.02562 * 20 18 16 22 22 H 1.48499 * 109.47366 * 300.00629 * 20 18 16 23 23 H 1.48502 * 109.47007 * 60.00693 * 20 18 16 24 24 C 1.38824 * 119.96935 * 0.25782 * 6 5 4 25 25 N 1.48022 * 120.00698 * 179.72429 * 24 6 5 26 26 O 1.21806 * 119.99914 * 184.93844 * 25 24 6 27 27 O 1.21801 * 119.99995 * 4.94100 * 25 24 6 28 28 C 1.38109 * 119.98768 * 359.51123 * 24 6 5 29 29 H 1.09001 * 109.47436 * 300.00521 * 1 2 3 30 30 H 1.09004 * 109.46957 * 59.99851 * 1 2 3 31 31 H 1.08996 * 109.47548 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99401 * 359.97438 * 4 3 2 33 33 H 1.08008 * 120.00728 * 179.97438 * 5 4 3 34 34 H 0.96998 * 119.99688 * 154.73010 * 7 6 5 35 35 H 1.09003 * 109.47151 * 60.00239 * 10 8 7 36 36 H 1.09001 * 109.47306 * 299.99633 * 10 8 7 37 37 H 1.08997 * 109.46975 * 296.04841 * 12 11 10 38 38 H 1.08997 * 109.46795 * 56.04764 * 12 11 10 39 39 H 1.08999 * 109.47111 * 176.05032 * 12 11 10 40 40 H 1.08997 * 109.46927 * 180.02562 * 15 13 11 41 41 H 1.08995 * 109.47001 * 300.00319 * 15 13 11 42 42 H 1.09003 * 109.46749 * 60.00093 * 15 13 11 43 43 H 0.97000 * 120.00003 * 179.97438 * 19 18 16 44 44 H 1.07995 * 119.99677 * 180.21586 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2905 2.3748 -0.0005 5 6 1.9167 3.6053 -0.0011 6 6 3.3034 3.6783 -0.0005 7 7 3.9396 4.9267 -0.0016 8 6 3.3053 6.0058 -0.5014 9 8 2.2264 5.8792 -1.0409 10 6 3.9367 7.3696 -0.3897 11 7 3.0545 8.3694 -1.0062 12 6 2.9446 8.1527 -2.4550 13 6 3.5166 9.7323 -0.7114 14 1 4.5248 9.8670 -1.1030 15 6 3.5242 9.9519 0.8028 16 6 2.5895 10.7283 -1.3592 17 1 1.7421 10.3833 -1.9329 18 6 2.8232 12.0799 -1.2194 19 7 3.8554 12.5000 -0.5212 20 14 1.6744 13.3144 -2.0231 21 1 2.1415 14.6922 -1.7249 22 1 1.6686 13.1013 -3.4927 23 1 0.3003 13.1311 -1.4908 24 6 4.0591 2.5138 -0.0049 25 7 5.5373 2.5906 -0.0105 26 8 6.1997 1.5728 -0.1051 27 8 6.0913 3.6716 0.0796 28 6 3.4315 1.2835 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2119 2.3180 -0.0014 33 1 1.3281 4.5109 -0.0019 34 1 4.8365 5.0142 0.3573 35 1 4.8982 7.3680 -0.9032 36 1 4.0866 7.6157 0.6615 37 1 3.9198 8.2993 -2.9193 38 1 2.6007 7.1361 -2.6452 39 1 2.2318 8.8621 -2.8755 40 1 3.8667 10.9633 1.0215 41 1 2.5160 9.8174 1.1945 42 1 4.1950 9.2315 1.2710 43 1 4.0200 13.4509 -0.4232 44 1 4.0192 0.3776 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129557569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:43 Heat of formation + Delta-G solvation = -34.052760 kcal Electronic energy + Delta-G solvation = -29276.807932 eV Core-core repulsion = 25005.732986 eV Total energy + Delta-G solvation = -4271.074946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.54670 -41.92276 -40.94800 -39.03119 -38.06021 -37.89211 -35.67964 -34.75915 -33.13895 -31.55563 -31.01280 -29.59966 -28.12441 -27.43945 -26.80108 -25.38247 -24.52066 -23.41504 -22.08222 -21.11690 -20.57152 -19.96751 -18.98021 -18.80585 -18.64126 -18.18519 -18.15571 -17.16444 -17.08350 -16.77571 -16.44674 -15.86280 -15.63852 -15.47911 -15.29077 -15.01194 -14.43078 -14.36096 -14.25243 -14.03686 -13.62296 -13.45943 -12.95646 -12.87364 -12.82069 -12.74677 -12.63128 -12.49556 -12.45479 -12.44038 -12.24376 -12.10456 -11.98829 -11.91157 -11.35235 -10.98358 -10.88057 -10.65606 -10.50119 -9.17617 -8.99911 -8.11332 -6.22116 -1.39564 -0.17677 0.11742 0.15353 1.33359 1.43645 1.44791 1.51995 1.58639 2.12723 2.18737 2.43315 3.13926 3.16808 3.29235 3.42853 3.51371 3.71806 3.75981 4.07206 4.23456 4.33848 4.36203 4.41169 4.44967 4.53119 4.63264 4.68798 4.77755 4.80187 4.89460 4.92374 5.02076 5.04188 5.13043 5.24489 5.29243 5.48960 5.70537 5.75209 6.07625 6.10412 6.25257 6.31275 6.37078 6.62957 6.85691 6.91404 7.46436 8.94450 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017939 B = 0.002554 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.480800 B =10962.612166 C =12098.689630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.318 6.318 3 C 0.116 3.884 4 C -0.111 4.111 5 C -0.106 4.106 6 C 0.185 3.815 7 N -0.663 5.663 8 C 0.527 3.473 9 O -0.518 6.518 10 C 0.031 3.969 11 N -0.529 5.529 12 C 0.041 3.959 13 C 0.217 3.783 14 H -0.027 1.027 15 C -0.125 4.125 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.957 3.043 21 H -0.283 1.283 22 H -0.274 1.274 23 H -0.273 1.273 24 C -0.056 4.056 25 N 0.043 4.957 26 O -0.150 6.150 27 O -0.198 6.198 28 C -0.075 4.075 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.182 0.818 33 H 0.163 0.837 34 H 0.430 0.570 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.008 0.992 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.040 0.960 43 H 0.262 0.738 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -25.704 3.567 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.069 3.931 4 C -0.130 4.130 5 C -0.127 4.127 6 C 0.085 3.915 7 N -0.318 5.318 8 C 0.316 3.684 9 O -0.392 6.392 10 C -0.100 4.100 11 N -0.254 5.254 12 C -0.107 4.107 13 C 0.111 3.889 14 H -0.009 1.009 15 C -0.183 4.183 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.184 4.184 19 N -0.557 5.557 20 Si 0.783 3.217 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.198 1.198 24 C -0.144 4.144 25 N 0.555 4.445 26 O -0.370 6.370 27 O -0.400 6.400 28 C -0.095 4.095 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.200 0.800 33 H 0.180 0.820 34 H 0.277 0.723 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.026 0.974 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.657 -25.700 3.464 26.773 hybrid contribution 1.227 1.315 -0.595 1.895 sum -5.429 -24.385 2.869 25.147 Atomic orbital electron populations 1.23550 0.75317 1.06490 1.02970 1.86120 1.24117 1.24567 1.88356 1.18497 0.90562 0.85809 0.98281 1.21953 1.03061 0.90010 0.97966 1.21416 0.90931 1.00664 0.99650 1.17717 0.92688 0.83481 0.97611 1.44403 1.21631 1.05306 1.60478 1.21096 0.85098 0.86136 0.76081 1.90599 1.21707 1.85752 1.41161 1.22090 0.95383 0.88556 1.04018 1.61815 1.48916 1.03065 1.11622 1.22252 0.99124 1.01511 0.87850 1.19123 0.92502 0.83436 0.93882 1.00918 1.21718 0.98847 1.01537 0.96234 1.21363 1.11539 0.91068 1.32015 0.92531 1.25643 0.96862 1.00022 0.95920 1.69985 1.29237 1.15220 1.41227 0.85620 0.79265 0.77869 0.78917 1.20858 1.19910 1.19819 1.20452 0.77965 0.95421 1.20546 1.43559 1.03710 1.00173 0.97052 1.94527 1.64831 1.25240 1.52422 1.94303 1.73269 1.16574 1.55846 1.19964 0.93317 0.96298 0.99923 0.90805 0.91137 0.85665 0.80041 0.81958 0.72272 0.91002 0.85914 0.97379 0.91065 0.92191 0.91805 0.95001 0.94163 0.92846 0.80845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -3.96 10.50 -93.20 -0.98 -4.94 16 3 C 0.12 1.75 6.69 22.50 0.15 1.90 16 4 C -0.11 -1.59 9.03 22.35 0.20 -1.38 16 5 C -0.11 -2.22 8.71 22.38 0.19 -2.02 16 6 C 0.18 4.39 6.41 38.11 0.24 4.64 16 7 N -0.66 -17.03 4.97 -303.39 -1.51 -18.53 16 8 C 0.53 16.20 7.32 87.65 0.64 16.84 16 9 O -0.52 -18.07 11.52 -3.07 -0.04 -18.10 16 10 C 0.03 1.02 5.27 85.55 0.45 1.47 16 11 N -0.53 -22.56 4.36 -906.02 -3.95 -26.51 16 12 C 0.04 1.69 8.88 127.69 1.13 2.82 16 13 C 0.22 10.77 2.06 44.17 0.09 10.86 16 14 H -0.03 -1.45 8.14 -2.39 -0.02 -1.47 16 15 C -0.13 -5.84 8.77 71.98 0.63 -5.21 16 16 C -0.52 -28.50 7.93 25.60 0.20 -28.30 16 17 H 0.06 3.12 6.39 -2.91 -0.02 3.10 16 18 C 0.01 0.79 5.30 84.66 0.45 1.24 16 19 N -0.92 -51.77 11.32 21.45 0.24 -51.53 16 20 Si 0.96 43.47 29.54 68.60 2.03 45.50 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C -0.06 -1.26 6.86 36.48 0.25 -1.01 16 25 N 0.04 1.09 4.45 -46.20 -0.21 0.88 16 26 O -0.15 -3.86 18.46 18.88 0.35 -3.52 16 27 O -0.20 -5.35 15.81 18.88 0.30 -5.05 16 28 C -0.08 -1.34 9.49 22.35 0.21 -1.13 16 29 H 0.07 0.17 7.66 -2.39 -0.02 0.15 16 30 H 0.07 0.22 7.66 -2.38 -0.02 0.20 16 31 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.18 1.37 6.29 -2.91 -0.02 1.35 16 33 H 0.16 3.93 5.82 -2.91 -0.02 3.91 16 34 H 0.43 10.21 5.75 -92.71 -0.53 9.68 16 35 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 36 H 0.12 3.79 5.83 -2.39 -0.01 3.78 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.07 2.75 5.82 -2.39 -0.01 2.73 16 39 H 0.06 2.65 6.23 -2.39 -0.01 2.64 16 40 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.56 6.20 -2.39 -0.01 1.55 16 43 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.17 2.66 7.62 -2.91 -0.02 2.64 16 Total: -1.00 -66.43 361.12 2.74 -63.69 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.54 Total: 16.25 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 5.97 Total: 1.87 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -5.42 Total: -95.69 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.37 Total: -31.61 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.43 2.74 -63.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129557569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.633 kcal (2) G-P(sol) polarization free energy of solvation -66.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds