Wall clock time and date at job start Tue Mar 31 2020 21:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35971 * 116.99767 * 2 1 4 4 C 1.38555 * 120.08420 * 359.97285 * 3 2 1 5 5 C 1.38240 * 120.01652 * 180.02562 * 4 3 2 6 6 N 1.48019 * 119.91413 * 179.97438 * 5 4 3 7 7 O 1.21799 * 119.99781 * 359.97438 * 6 5 4 8 8 O 1.21794 * 120.00180 * 179.97438 * 6 5 4 9 9 C 1.38279 * 120.17662 * 359.95303 * 5 4 3 10 10 C 1.38193 * 120.16574 * 359.76928 * 9 5 4 11 11 C 1.38727 * 119.98539 * 0.53045 * 10 9 5 12 12 N 1.40118 * 120.09059 * 179.71991 * 11 10 9 13 13 C 1.34774 * 120.00464 * 335.19570 * 12 11 10 14 14 O 1.21300 * 119.99576 * 354.47127 * 13 12 11 15 15 C 1.50701 * 120.00418 * 174.46734 * 13 12 11 16 16 N 1.46899 * 109.46936 * 180.02562 * 15 13 12 17 17 C 1.46893 * 111.00261 * 293.95225 * 16 15 13 18 18 C 1.46900 * 110.99750 * 169.99841 * 16 15 13 19 19 H 1.08995 * 109.47222 * 310.00239 * 18 16 15 20 20 C 1.53001 * 109.47126 * 70.00007 * 18 16 15 21 21 C 1.50700 * 109.47151 * 190.00029 * 18 16 15 22 22 H 1.07995 * 120.00464 * 359.97438 * 21 18 16 23 23 C 1.37885 * 119.99908 * 180.02562 * 21 18 16 24 24 N 1.31515 * 120.00037 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 119.99773 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47332 * 269.99870 * 25 23 21 27 27 H 1.48502 * 109.47220 * 30.00308 * 25 23 21 28 28 H 1.48504 * 109.46979 * 150.00269 * 25 23 21 29 29 H 1.09004 * 109.47109 * 60.00742 * 1 2 3 30 30 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47770 * 300.00353 * 1 2 3 32 32 H 1.08006 * 119.99001 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.91650 * 180.02562 * 9 5 4 34 34 H 1.08006 * 120.00920 * 180.25641 * 10 9 5 35 35 H 0.97007 * 119.99942 * 155.19539 * 12 11 10 36 36 H 1.08997 * 109.46585 * 60.00156 * 15 13 12 37 37 H 1.08999 * 109.46673 * 300.00414 * 15 13 12 38 38 H 1.09005 * 109.47477 * 296.05038 * 17 16 15 39 39 H 1.09001 * 109.47306 * 56.04659 * 17 16 15 40 40 H 1.09000 * 109.47434 * 176.04472 * 17 16 15 41 41 H 1.08998 * 109.47547 * 179.97438 * 20 18 16 42 42 H 1.09001 * 109.47163 * 300.00325 * 20 18 16 43 43 H 1.09003 * 109.47178 * 60.00025 * 20 18 16 44 44 H 0.97000 * 119.99853 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0006 5 6 1.9223 3.6056 -0.0011 6 7 1.1157 4.8467 -0.0023 7 8 -0.1006 4.7825 -0.0033 8 8 1.6682 5.9322 -0.0023 9 6 3.3031 3.6807 -0.0001 10 6 4.0613 2.5254 0.0063 11 6 3.4372 1.2864 0.0005 12 7 4.2039 0.1136 0.0010 13 6 5.4616 0.1304 -0.4831 14 8 5.8951 1.1331 -1.0103 15 6 6.3293 -1.0965 -0.3693 16 7 7.6434 -0.8239 -0.9666 17 6 7.5290 -0.6099 -2.4154 18 6 8.5921 -1.9048 -0.6674 19 1 8.5779 -2.1150 0.4020 20 6 8.1914 -3.1634 -1.4398 21 6 9.9795 -1.4837 -1.0783 22 1 10.1404 -0.5105 -1.5181 23 6 11.0433 -2.3412 -0.8936 24 7 10.8473 -3.5264 -0.3585 25 14 12.7629 -1.8193 -1.4036 26 1 13.0046 -2.2209 -2.8127 27 1 12.8898 -0.3449 -1.2803 28 1 13.7614 -2.4774 -0.5232 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2147 2.3195 -0.0006 33 1 3.7901 4.6447 -0.0001 34 1 5.1396 2.5870 0.0112 35 1 3.8295 -0.7105 0.3499 36 1 5.8560 -1.9261 -0.8945 37 1 6.4551 -1.3563 0.6818 38 1 7.1772 -1.5253 -2.8913 39 1 6.8205 0.1955 -2.6089 40 1 8.5043 -0.3412 -2.8211 41 1 8.8956 -3.9653 -1.2182 42 1 7.1879 -3.4680 -1.1426 43 1 8.2056 -2.9532 -2.5093 44 1 11.5957 -4.1298 -0.2289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129579610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:07 Heat of formation + Delta-G solvation = -22.400028 kcal Electronic energy + Delta-G solvation = -28926.988595 eV Core-core repulsion = 24656.418950 eV Total energy + Delta-G solvation = -4270.569645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.39112 -41.27024 -39.81138 -37.99931 -36.88677 -36.72631 -35.16188 -32.82751 -31.42438 -30.87595 -29.26396 -28.19550 -27.70725 -26.10118 -25.31898 -24.18868 -23.33414 -22.55643 -20.75711 -19.97218 -19.47670 -18.88568 -18.18857 -17.71466 -17.36920 -17.28281 -16.51879 -16.26816 -16.04864 -15.59182 -15.00773 -14.88928 -14.34666 -14.23677 -14.19173 -13.66882 -13.61379 -13.21157 -12.88801 -12.61609 -12.44220 -12.28483 -11.84038 -11.74914 -11.71713 -11.40806 -11.32199 -11.24926 -11.16528 -10.97461 -10.89226 -10.78375 -10.56466 -10.20413 -10.08353 -9.67046 -9.33532 -8.98571 -8.51908 -8.45850 -7.32791 -6.08642 -4.11840 -0.43072 0.62405 1.07558 1.19685 2.41570 2.45735 2.64635 3.04158 3.27760 3.34644 3.39667 4.01756 4.18458 4.29241 4.34566 4.44803 4.55005 4.63509 4.85965 4.89930 4.99634 5.01548 5.12915 5.24100 5.42519 5.43093 5.53077 5.61762 5.79726 6.07749 6.18073 6.19873 6.28729 6.55439 6.61042 6.68985 6.84955 6.95296 7.00673 7.29273 7.46704 7.58891 7.74479 7.91466 8.01728 8.23887 8.44780 8.94239 9.53489 10.98673 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.002301 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.569017 B =12168.170387 C =13230.371055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.308 6.308 3 C 0.092 3.908 4 C -0.128 4.128 5 C -0.040 4.040 6 N 0.035 4.965 7 O -0.172 6.172 8 O -0.160 6.160 9 C -0.056 4.056 10 C -0.105 4.105 11 C 0.197 3.803 12 N -0.668 5.668 13 C 0.516 3.484 14 O -0.489 6.489 15 C 0.038 3.962 16 N -0.517 5.517 17 C 0.028 3.972 18 C 0.212 3.788 19 H 0.040 0.960 20 C -0.175 4.175 21 C -0.498 4.498 22 H 0.064 0.936 23 C 0.058 3.942 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.282 1.282 27 H -0.273 1.273 28 H -0.287 1.287 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.060 0.940 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.180 0.820 35 H 0.420 0.580 36 H 0.061 0.939 37 H 0.105 0.895 38 H 0.015 0.985 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.005 0.995 43 H 0.034 0.966 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.297 5.460 2.340 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.148 4.148 5 C -0.124 4.124 6 N 0.552 4.448 7 O -0.386 6.386 8 O -0.376 6.376 9 C -0.076 4.076 10 C -0.127 4.127 11 C 0.098 3.902 12 N -0.314 5.314 13 C 0.305 3.695 14 O -0.360 6.360 15 C -0.094 4.094 16 N -0.241 5.241 17 C -0.120 4.120 18 C 0.106 3.894 19 H 0.058 0.942 20 C -0.234 4.234 21 C -0.536 4.536 22 H 0.082 0.918 23 C -0.143 4.143 24 N -0.535 5.535 25 Si 0.726 3.274 26 H -0.208 1.208 27 H -0.198 1.198 28 H -0.213 1.213 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.197 0.803 35 H 0.257 0.743 36 H 0.079 0.921 37 H 0.122 0.878 38 H 0.034 0.966 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.024 0.976 43 H 0.053 0.947 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.117 5.576 2.220 20.993 hybrid contribution -0.192 -0.643 -0.446 0.806 sum -20.309 4.932 1.774 20.975 Atomic orbital electron populations 1.23210 0.77128 1.04867 1.01906 1.86082 1.22338 1.24700 1.88999 1.18308 0.90105 0.84874 1.02354 1.20702 1.01879 0.89290 1.02976 1.20711 0.91452 0.83852 1.16427 1.43545 1.01258 1.02682 0.97266 1.94511 0.95976 1.94050 1.54021 1.94545 1.74368 1.15313 1.53411 1.20953 0.90055 1.01179 0.95434 1.21467 1.03056 0.88165 0.99967 1.17584 0.86951 0.88395 0.97316 1.43876 1.14640 1.10878 1.61974 1.21552 0.80177 0.91627 0.76182 1.90637 1.71641 1.34020 1.39729 1.21952 0.92475 0.92004 1.02935 1.62167 1.04229 1.45848 1.11813 1.22390 1.02681 0.98635 0.88274 1.19389 0.89860 0.84198 0.95951 0.94177 1.22446 0.97905 1.03527 0.99509 1.21069 0.90678 1.01489 1.40398 0.91755 1.24920 0.99180 0.94927 0.95273 1.69870 1.31353 1.07764 1.44546 0.86489 0.83759 0.78876 0.78270 1.20792 1.19758 1.21287 0.92101 0.87343 0.92093 0.82354 0.82375 0.80320 0.74257 0.92114 0.87752 0.96634 0.92295 0.90702 0.89070 0.97562 0.94706 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.41 9.91 -19.65 -0.19 -2.61 16 3 C 0.09 0.86 6.70 -39.07 -0.26 0.60 16 4 C -0.13 -1.18 8.54 -39.46 -0.34 -1.52 16 5 C -0.04 -0.43 6.85 -79.93 -0.55 -0.98 16 6 N 0.04 0.44 4.45 33.97 0.15 0.59 16 7 O -0.17 -2.21 18.44 -29.46 -0.54 -2.75 16 8 O -0.16 -2.14 18.44 -29.46 -0.54 -2.68 16 9 C -0.06 -0.58 9.55 -39.58 -0.38 -0.96 16 10 C -0.11 -1.18 8.72 -39.42 -0.34 -1.52 16 11 C 0.20 2.10 6.45 -83.49 -0.54 1.57 16 12 N -0.67 -7.03 5.29 -9.75 -0.05 -7.08 16 13 C 0.52 7.17 7.33 -10.99 -0.08 7.09 16 14 O -0.49 -8.20 11.50 5.54 0.06 -8.13 16 15 C 0.04 0.58 5.02 -4.98 -0.02 0.55 16 16 N -0.52 -10.39 4.44 -237.74 -1.06 -11.45 16 17 C 0.03 0.55 8.46 60.06 0.51 1.06 16 18 C 0.21 4.95 2.31 -68.86 -0.16 4.80 16 19 H 0.04 1.01 7.93 -51.93 -0.41 0.60 16 20 C -0.17 -3.89 8.22 37.16 0.31 -3.59 16 21 C -0.50 -13.13 7.97 -34.44 -0.27 -13.40 16 22 H 0.06 1.74 7.10 -52.49 -0.37 1.36 16 23 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 24 N -0.90 -24.47 11.32 55.43 0.63 -23.84 16 25 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.16 1.17 5.84 -52.48 -0.31 0.86 16 33 H 0.16 1.45 7.60 -52.49 -0.40 1.05 16 34 H 0.18 2.24 5.79 -52.48 -0.30 1.93 16 35 H 0.42 3.35 8.34 -40.82 -0.34 3.01 16 36 H 0.06 0.85 7.06 -51.93 -0.37 0.48 16 37 H 0.10 1.45 7.93 -51.93 -0.41 1.04 16 38 H 0.02 0.29 6.21 -51.93 -0.32 -0.04 16 39 H 0.06 1.09 5.82 -51.93 -0.30 0.78 16 40 H 0.07 1.57 6.86 -51.93 -0.36 1.21 16 41 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 42 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 43 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 44 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -30.61 363.45 -7.57 -38.18 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.25 Total: 2.19 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -1.23 Total: -3.76 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.33 Total: -41.78 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.22 Total: -16.18 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.61 -7.57 -38.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.779 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds