Wall clock time and date at job start Tue Mar 31 2020 21:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35971 * 116.99767 * 2 1 4 4 C 1.38555 * 120.08420 * 359.97285 * 3 2 1 5 5 C 1.38240 * 120.01652 * 180.02562 * 4 3 2 6 6 N 1.48019 * 119.91413 * 179.97438 * 5 4 3 7 7 O 1.21799 * 119.99781 * 359.97438 * 6 5 4 8 8 O 1.21794 * 120.00180 * 179.97438 * 6 5 4 9 9 C 1.38279 * 120.17662 * 359.95303 * 5 4 3 10 10 C 1.38193 * 120.16574 * 359.76928 * 9 5 4 11 11 C 1.38727 * 119.98539 * 0.53045 * 10 9 5 12 12 N 1.40118 * 120.09059 * 179.71991 * 11 10 9 13 13 C 1.34774 * 120.00464 * 335.19570 * 12 11 10 14 14 O 1.21300 * 119.99576 * 354.47127 * 13 12 11 15 15 C 1.50701 * 120.00418 * 174.46734 * 13 12 11 16 16 N 1.46899 * 109.46936 * 180.02562 * 15 13 12 17 17 C 1.46893 * 111.00261 * 293.95225 * 16 15 13 18 18 C 1.46900 * 110.99750 * 169.99841 * 16 15 13 19 19 H 1.08995 * 109.47222 * 310.00239 * 18 16 15 20 20 C 1.53001 * 109.47126 * 70.00007 * 18 16 15 21 21 C 1.50700 * 109.47151 * 190.00029 * 18 16 15 22 22 H 1.07995 * 120.00464 * 359.97438 * 21 18 16 23 23 C 1.37885 * 119.99908 * 180.02562 * 21 18 16 24 24 N 1.31515 * 120.00037 * 359.97438 * 23 21 18 25 25 Si 1.86797 * 119.99773 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47332 * 269.99870 * 25 23 21 27 27 H 1.48502 * 109.47220 * 30.00308 * 25 23 21 28 28 H 1.48504 * 109.46979 * 150.00269 * 25 23 21 29 29 H 1.09004 * 109.47109 * 60.00742 * 1 2 3 30 30 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47770 * 300.00353 * 1 2 3 32 32 H 1.08006 * 119.99001 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.91650 * 180.02562 * 9 5 4 34 34 H 1.08006 * 120.00920 * 180.25641 * 10 9 5 35 35 H 0.97007 * 119.99942 * 155.19539 * 12 11 10 36 36 H 1.08997 * 109.46585 * 60.00156 * 15 13 12 37 37 H 1.08999 * 109.46673 * 300.00414 * 15 13 12 38 38 H 1.09005 * 109.47477 * 296.05038 * 17 16 15 39 39 H 1.09001 * 109.47306 * 56.04659 * 17 16 15 40 40 H 1.09000 * 109.47434 * 176.04472 * 17 16 15 41 41 H 1.08998 * 109.47547 * 179.97438 * 20 18 16 42 42 H 1.09001 * 109.47163 * 300.00325 * 20 18 16 43 43 H 1.09003 * 109.47178 * 60.00025 * 20 18 16 44 44 H 0.97000 * 119.99853 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2933 2.3746 -0.0006 5 6 1.9223 3.6056 -0.0011 6 7 1.1157 4.8467 -0.0023 7 8 -0.1006 4.7825 -0.0033 8 8 1.6682 5.9322 -0.0023 9 6 3.3031 3.6807 -0.0001 10 6 4.0613 2.5254 0.0063 11 6 3.4372 1.2864 0.0005 12 7 4.2039 0.1136 0.0010 13 6 5.4616 0.1304 -0.4831 14 8 5.8951 1.1331 -1.0103 15 6 6.3293 -1.0965 -0.3693 16 7 7.6434 -0.8239 -0.9666 17 6 7.5290 -0.6099 -2.4154 18 6 8.5921 -1.9048 -0.6674 19 1 8.5779 -2.1150 0.4020 20 6 8.1914 -3.1634 -1.4398 21 6 9.9795 -1.4837 -1.0783 22 1 10.1404 -0.5105 -1.5181 23 6 11.0433 -2.3412 -0.8936 24 7 10.8473 -3.5264 -0.3585 25 14 12.7629 -1.8193 -1.4036 26 1 13.0046 -2.2209 -2.8127 27 1 12.8898 -0.3449 -1.2803 28 1 13.7614 -2.4774 -0.5232 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2147 2.3195 -0.0006 33 1 3.7901 4.6447 -0.0001 34 1 5.1396 2.5870 0.0112 35 1 3.8295 -0.7105 0.3499 36 1 5.8560 -1.9261 -0.8945 37 1 6.4551 -1.3563 0.6818 38 1 7.1772 -1.5253 -2.8913 39 1 6.8205 0.1955 -2.6089 40 1 8.5043 -0.3412 -2.8211 41 1 8.8956 -3.9653 -1.2182 42 1 7.1879 -3.4680 -1.1426 43 1 8.2056 -2.9532 -2.5093 44 1 11.5957 -4.1298 -0.2289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129579610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:06 Heat of formation + Delta-G solvation = -42.188364 kcal Electronic energy + Delta-G solvation = -28927.846682 eV Core-core repulsion = 24656.418950 eV Total energy + Delta-G solvation = -4271.427732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.32181 -42.15865 -40.76160 -38.89644 -38.28897 -37.69644 -36.17157 -34.71717 -32.39477 -31.65208 -30.87760 -29.13334 -28.64911 -27.27711 -27.09116 -25.65676 -24.17894 -23.46463 -21.92448 -21.04433 -20.77621 -19.84720 -19.13765 -18.65844 -18.53422 -18.01180 -17.97603 -17.24395 -16.99011 -16.68758 -16.51404 -16.01029 -15.80274 -15.47301 -15.13306 -14.71382 -14.50971 -14.40010 -14.31487 -14.11555 -13.45222 -13.26576 -12.90901 -12.81002 -12.79757 -12.66131 -12.58700 -12.55581 -12.39204 -12.33199 -12.32523 -12.27909 -12.04458 -11.98269 -11.87761 -11.03571 -10.77012 -10.47698 -10.16434 -9.33426 -8.88342 -8.10758 -6.19590 -1.34735 -0.14655 0.14839 0.29946 1.37471 1.42253 1.44399 1.53821 1.61232 1.94377 2.20229 2.44252 3.19185 3.25221 3.35084 3.46691 3.51169 3.54209 3.94962 4.06333 4.31384 4.34649 4.35117 4.35759 4.42434 4.57333 4.59587 4.66226 4.71271 4.77034 4.83143 4.92057 4.95063 5.12563 5.14852 5.25076 5.33031 5.51800 5.71711 5.80874 5.97218 6.11028 6.22126 6.44391 6.47152 6.67357 6.90907 6.96092 7.49147 8.94901 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.002301 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.569017 B =12168.170387 C =13230.371055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.312 6.312 3 C 0.107 3.893 4 C -0.121 4.121 5 C -0.046 4.046 6 N 0.036 4.964 7 O -0.168 6.168 8 O -0.188 6.188 9 C -0.057 4.057 10 C -0.111 4.111 11 C 0.185 3.815 12 N -0.651 5.651 13 C 0.524 3.476 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.535 5.535 17 C 0.039 3.961 18 C 0.217 3.783 19 H 0.019 0.981 20 C -0.162 4.162 21 C -0.514 4.514 22 H 0.050 0.950 23 C 0.015 3.985 24 N -0.917 5.917 25 Si 0.953 3.047 26 H -0.277 1.277 27 H -0.274 1.274 28 H -0.283 1.283 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.434 0.566 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.023 0.977 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.036 0.964 43 H 0.031 0.969 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.296 4.770 2.416 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.225 6.225 3 C 0.058 3.942 4 C -0.141 4.141 5 C -0.131 4.131 6 N 0.550 4.450 7 O -0.385 6.385 8 O -0.398 6.398 9 C -0.077 4.077 10 C -0.132 4.132 11 C 0.086 3.914 12 N -0.297 5.297 13 C 0.313 3.687 14 O -0.396 6.396 15 C -0.094 4.094 16 N -0.259 5.259 17 C -0.109 4.109 18 C 0.111 3.889 19 H 0.037 0.963 20 C -0.221 4.221 21 C -0.552 4.552 22 H 0.068 0.932 23 C -0.183 4.183 24 N -0.557 5.557 25 Si 0.779 3.221 26 H -0.203 1.203 27 H -0.199 1.199 28 H -0.208 1.208 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.274 0.726 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.137 4.909 2.311 22.793 hybrid contribution 0.267 -0.476 -0.436 0.698 sum -21.871 4.433 1.875 22.394 Atomic orbital electron populations 1.23558 0.75130 1.06699 1.02835 1.86100 1.24314 1.23611 1.88502 1.18184 0.89464 0.85547 1.01031 1.20910 1.02953 0.88419 1.01847 1.20814 0.91442 0.83636 1.17191 1.43749 1.01293 1.03040 0.96887 1.94487 0.96334 1.94146 1.53489 1.94549 1.74398 1.16059 1.54832 1.20978 0.90088 1.01323 0.95300 1.21303 1.02422 0.88803 1.00690 1.17652 0.87699 0.87998 0.98015 1.43524 1.13448 1.11589 1.61114 1.21176 0.80930 0.90565 0.76024 1.90642 1.72586 1.34873 1.41516 1.22006 0.90512 0.93377 1.03553 1.61937 1.06582 1.44955 1.12382 1.22255 1.01494 0.99209 0.87943 1.19122 0.89684 0.85519 0.94602 0.96292 1.22239 0.98836 1.01921 0.99098 1.21336 0.92718 1.00919 1.40276 0.93213 1.25569 1.02263 0.95051 0.95446 1.69971 1.32105 1.08359 1.45226 0.85637 0.80123 0.78275 0.78061 1.20313 1.19932 1.20849 0.91380 0.85216 0.90911 0.80242 0.81796 0.81809 0.72582 0.90056 0.86438 0.95905 0.91335 0.93168 0.91871 0.94474 0.95004 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.31 -3.85 9.91 -93.22 -0.92 -4.78 16 3 C 0.11 1.71 6.70 22.60 0.15 1.86 16 4 C -0.12 -1.93 8.54 22.35 0.19 -1.73 16 5 C -0.05 -0.94 6.85 36.39 0.25 -0.69 16 6 N 0.04 0.86 4.45 -46.44 -0.21 0.66 16 7 O -0.17 -4.05 18.44 18.89 0.35 -3.71 16 8 O -0.19 -5.00 18.44 18.89 0.35 -4.65 16 9 C -0.06 -1.15 9.55 22.27 0.21 -0.94 16 10 C -0.11 -2.41 8.72 22.38 0.20 -2.22 16 11 C 0.18 3.64 6.45 38.19 0.25 3.88 16 12 N -0.65 -12.34 5.29 -303.13 -1.60 -13.94 16 13 C 0.52 13.85 7.33 87.66 0.64 14.49 16 14 O -0.52 -17.28 11.50 -3.09 -0.04 -17.31 16 15 C 0.04 1.05 5.02 85.56 0.43 1.48 16 16 N -0.53 -21.29 4.44 -906.07 -4.02 -25.31 16 17 C 0.04 1.50 8.46 127.69 1.08 2.58 16 18 C 0.22 10.19 2.31 44.17 0.10 10.29 16 19 H 0.02 0.97 7.93 -2.39 -0.02 0.95 16 20 C -0.16 -7.09 8.22 71.98 0.59 -6.49 16 21 C -0.51 -27.49 7.97 25.60 0.20 -27.29 16 22 H 0.05 2.75 7.10 -2.91 -0.02 2.73 16 23 C 0.02 0.83 5.30 84.66 0.45 1.28 16 24 N -0.92 -50.42 11.32 21.45 0.24 -50.18 16 25 Si 0.95 43.13 29.54 68.60 2.03 45.16 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H 0.07 0.30 7.66 -2.38 -0.02 0.29 16 30 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.26 7.66 -2.39 -0.02 0.24 16 32 H 0.18 2.05 5.84 -2.91 -0.02 2.03 16 33 H 0.16 3.02 7.60 -2.91 -0.02 3.00 16 34 H 0.16 4.15 5.79 -2.91 -0.02 4.14 16 35 H 0.43 5.70 8.34 -92.70 -0.77 4.92 16 36 H 0.08 2.03 7.06 -2.39 -0.02 2.02 16 37 H 0.12 3.06 7.93 -2.39 -0.02 3.04 16 38 H 0.02 0.82 6.21 -2.38 -0.01 0.81 16 39 H 0.07 2.49 5.82 -2.39 -0.01 2.48 16 40 H 0.05 2.14 6.86 -2.39 -0.02 2.12 16 41 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 42 H 0.04 1.35 6.91 -2.39 -0.02 1.33 16 43 H 0.03 1.37 6.33 -2.39 -0.02 1.36 16 44 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -66.05 363.45 2.33 -63.73 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.30 Total: 12.66 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.86 Total: -2.32 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -5.59 Total: -88.78 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.26 Total: -30.45 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -66.05 2.33 -63.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.537 kcal (2) G-P(sol) polarization free energy of solvation -66.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds