Wall clock time and date at job start Tue Mar 31 2020 21:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35973 * 117.00475 * 2 1 4 4 C 1.38543 * 120.08013 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01683 * 180.02562 * 4 3 2 6 6 N 1.48010 * 119.91381 * 179.97438 * 5 4 3 7 7 O 1.21800 * 120.00181 * 359.97438 * 6 5 4 8 8 O 1.21800 * 120.00364 * 179.97438 * 6 5 4 9 9 C 1.38279 * 120.17414 * 359.95221 * 5 4 3 10 10 C 1.38200 * 120.16795 * 359.77141 * 9 5 4 11 11 C 1.38721 * 119.97973 * 0.52815 * 10 9 5 12 12 N 1.40127 * 120.09149 * 179.72112 * 11 10 9 13 13 C 1.34779 * 119.99469 * 34.63385 * 12 11 10 14 14 O 1.21293 * 120.00449 * 355.54334 * 13 12 11 15 15 C 1.50700 * 119.99894 * 175.55031 * 13 12 11 16 16 N 1.46904 * 109.47304 * 179.97438 * 15 13 12 17 17 C 1.46898 * 110.99732 * 66.04491 * 16 15 13 18 18 C 1.46897 * 110.99878 * 190.00145 * 16 15 13 19 19 H 1.08994 * 109.47433 * 55.00270 * 18 16 15 20 20 C 1.53003 * 109.47050 * 294.99915 * 18 16 15 21 21 C 1.50703 * 109.46798 * 175.00473 * 18 16 15 22 22 H 1.07998 * 120.00173 * 359.97438 * 21 18 16 23 23 C 1.37881 * 119.99781 * 180.02562 * 21 18 16 24 24 N 1.31512 * 120.00060 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 119.99824 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46911 * 59.99636 * 25 23 21 27 27 H 1.48495 * 109.46840 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46803 * 299.99950 * 25 23 21 29 29 H 1.08995 * 109.47600 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 300.00140 * 1 2 3 31 31 H 1.09003 * 109.46882 * 59.99973 * 1 2 3 32 32 H 1.08001 * 119.99487 * 0.02577 * 4 3 2 33 33 H 1.08001 * 119.91854 * 180.02562 * 9 5 4 34 34 H 1.07994 * 120.01109 * 180.25195 * 10 9 5 35 35 H 0.96995 * 120.00101 * 214.63369 * 12 11 10 36 36 H 1.09005 * 109.47246 * 59.99830 * 15 13 12 37 37 H 1.08997 * 109.47139 * 299.99715 * 15 13 12 38 38 H 1.09001 * 109.46922 * 183.95421 * 17 16 15 39 39 H 1.08999 * 109.47325 * 303.95411 * 17 16 15 40 40 H 1.09002 * 109.46903 * 63.95602 * 17 16 15 41 41 H 1.08992 * 109.47065 * 60.00429 * 20 18 16 42 42 H 1.09002 * 109.47049 * 180.02562 * 20 18 16 43 43 H 1.09007 * 109.47061 * 300.00233 * 20 18 16 44 44 H 0.96997 * 119.99619 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3745 -0.0005 5 6 1.9226 3.6056 -0.0011 6 7 1.1161 4.8466 -0.0022 7 8 -0.1002 4.7825 -0.0032 8 8 1.6687 5.9321 -0.0022 9 6 3.3034 3.6805 -0.0001 10 6 4.0616 2.5251 0.0062 11 6 3.4374 1.2863 0.0005 12 7 4.2039 0.1133 0.0010 13 6 5.3736 0.0730 0.6694 14 8 5.8023 1.0746 1.2026 15 6 6.1490 -1.2164 0.7541 16 7 7.3778 -0.9989 1.5292 17 6 7.0676 -0.6849 2.9303 18 6 8.2719 -2.1606 1.4355 19 1 8.4705 -2.3827 0.3870 20 6 7.6074 -3.3702 2.0960 21 6 9.5692 -1.8541 2.1385 22 1 9.7150 -0.8923 2.6076 23 6 10.5703 -2.8011 2.1819 24 7 10.3929 -3.9721 1.6103 25 14 12.1786 -2.4208 3.0527 26 1 11.9085 -2.1185 4.4813 27 1 13.0824 -3.5953 2.9581 28 1 12.8230 -1.2466 2.4115 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2149 2.3195 -0.0005 33 1 3.7905 4.6444 -0.0001 34 1 5.1398 2.5866 0.0111 35 1 3.8927 -0.6696 -0.4797 36 1 6.4080 -1.5513 -0.2504 37 1 5.5394 -1.9754 1.2443 38 1 7.9904 -0.4597 3.4650 39 1 6.4042 0.1790 2.9708 40 1 6.5782 -1.5410 3.3948 41 1 6.6692 -3.5920 1.5876 42 1 8.2710 -4.2322 2.0269 43 1 7.4088 -3.1481 3.1446 44 1 11.0971 -4.6385 1.6411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129579828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:13 Heat of formation + Delta-G solvation = -23.383616 kcal Electronic energy + Delta-G solvation = -28956.201228 eV Core-core repulsion = 24685.588931 eV Total energy + Delta-G solvation = -4270.612297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41207 -41.24065 -39.77334 -38.01492 -36.87389 -36.74852 -35.12477 -32.80890 -31.42544 -30.88515 -29.22492 -28.19583 -27.75620 -26.11300 -25.25710 -24.17461 -23.30330 -22.57063 -20.76956 -19.98241 -19.46617 -18.90099 -18.16385 -17.73685 -17.35872 -17.26886 -16.55778 -16.26961 -16.08035 -15.50855 -14.98944 -14.88946 -14.34507 -14.23698 -14.22818 -13.59287 -13.57304 -13.24076 -12.85750 -12.60588 -12.46678 -12.28516 -11.84523 -11.76810 -11.68356 -11.41801 -11.34165 -11.18682 -11.16492 -10.93382 -10.84653 -10.79844 -10.56988 -10.19969 -10.06114 -9.64577 -9.36211 -8.97829 -8.58602 -8.45527 -7.31085 -6.08431 -4.11844 -0.45914 0.60906 1.05793 1.16799 2.44485 2.48629 2.65377 3.01233 3.29898 3.33860 3.37693 4.01563 4.17003 4.28248 4.35106 4.46392 4.55150 4.63596 4.85776 4.92993 4.99400 5.01391 5.11326 5.24368 5.39503 5.44441 5.55950 5.64286 5.79270 6.06414 6.16393 6.22457 6.31960 6.56545 6.61408 6.69830 6.87745 6.96072 7.03515 7.32724 7.44191 7.60252 7.73710 7.94010 8.04062 8.24948 8.45903 8.93664 9.53419 10.98881 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.002298 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.399802 B =12183.682171 C =13185.035696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.100 3.900 4 C -0.132 4.132 5 C -0.034 4.034 6 N 0.034 4.966 7 O -0.171 6.171 8 O -0.159 6.159 9 C -0.061 4.061 10 C -0.093 4.093 11 C 0.190 3.810 12 N -0.672 5.672 13 C 0.516 3.484 14 O -0.492 6.492 15 C 0.039 3.961 16 N -0.517 5.517 17 C 0.029 3.971 18 C 0.212 3.788 19 H 0.041 0.959 20 C -0.175 4.175 21 C -0.500 4.500 22 H 0.064 0.936 23 C 0.059 3.941 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.276 1.276 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.419 0.581 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.014 0.986 41 H 0.006 0.994 42 H 0.091 0.909 43 H 0.032 0.968 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.404 6.773 -5.655 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.051 3.949 4 C -0.153 4.153 5 C -0.118 4.118 6 N 0.552 4.448 7 O -0.384 6.384 8 O -0.375 6.375 9 C -0.081 4.081 10 C -0.114 4.114 11 C 0.092 3.908 12 N -0.319 5.319 13 C 0.305 3.695 14 O -0.363 6.363 15 C -0.093 4.093 16 N -0.241 5.241 17 C -0.119 4.119 18 C 0.106 3.894 19 H 0.059 0.941 20 C -0.234 4.234 21 C -0.539 4.539 22 H 0.082 0.918 23 C -0.142 4.142 24 N -0.535 5.535 25 Si 0.726 3.274 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.201 1.201 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.025 0.975 42 H 0.109 0.891 43 H 0.052 0.948 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.190 6.840 -5.456 21.091 hybrid contribution -0.324 -0.630 0.569 0.909 sum -19.514 6.210 -4.887 21.053 Atomic orbital electron populations 1.23220 0.77176 1.04908 1.01897 1.86113 1.22285 1.24653 1.88794 1.18431 0.90293 0.84833 1.01350 1.20724 1.01938 0.89312 1.03314 1.20724 0.91453 0.83872 1.15765 1.43549 1.01275 1.02678 0.97311 1.94515 0.95939 1.94044 1.53921 1.94548 1.74367 1.15286 1.53340 1.20949 0.90098 1.01190 0.95875 1.21336 1.02639 0.88312 0.99129 1.17527 0.86862 0.88363 0.98056 1.43821 1.21888 1.13533 1.52680 1.21538 0.79221 0.92352 0.76374 1.90662 1.66334 1.35859 1.43484 1.21934 0.93853 0.91387 1.02150 1.62163 1.10066 1.41162 1.10705 1.22379 1.01678 0.98473 0.89373 1.19380 0.89858 0.83003 0.97133 0.94096 1.22446 0.97971 1.04284 0.98712 1.21048 0.97968 1.00269 1.34606 0.91786 1.24915 0.98648 0.94994 0.95667 1.69859 1.33645 1.05429 1.44537 0.86548 0.83062 0.77689 0.80056 1.20328 1.21385 1.20149 0.87316 0.92089 0.92090 0.82327 0.82359 0.80852 0.74362 0.87919 0.91987 0.90603 0.92366 0.96754 0.97467 0.89076 0.94849 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.44 10.06 -19.65 -0.20 -2.64 16 3 C 0.10 0.93 6.70 -39.07 -0.26 0.67 16 4 C -0.13 -1.21 8.54 -39.46 -0.34 -1.55 16 5 C -0.03 -0.36 6.85 -79.93 -0.55 -0.91 16 6 N 0.03 0.42 4.45 33.97 0.15 0.57 16 7 O -0.17 -2.16 18.44 -29.46 -0.54 -2.71 16 8 O -0.16 -2.10 18.44 -29.46 -0.54 -2.64 16 9 C -0.06 -0.62 9.55 -39.58 -0.38 -1.00 16 10 C -0.09 -1.02 8.70 -39.42 -0.34 -1.36 16 11 C 0.19 2.02 6.32 -83.49 -0.53 1.49 16 12 N -0.67 -7.09 5.19 -9.74 -0.05 -7.14 16 13 C 0.52 7.28 7.37 -10.98 -0.08 7.20 16 14 O -0.49 -8.38 11.75 5.55 0.07 -8.31 16 15 C 0.04 0.59 4.89 -4.97 -0.02 0.57 16 16 N -0.52 -10.51 4.48 -237.73 -1.06 -11.57 16 17 C 0.03 0.57 8.53 60.06 0.51 1.09 16 18 C 0.21 4.99 2.34 -68.86 -0.16 4.83 16 19 H 0.04 1.04 8.03 -51.93 -0.42 0.63 16 20 C -0.17 -3.91 8.28 37.16 0.31 -3.60 16 21 C -0.50 -13.22 7.94 -34.44 -0.27 -13.50 16 22 H 0.06 1.72 6.75 -52.49 -0.35 1.37 16 23 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 24 N -0.90 -24.50 11.32 55.43 0.63 -23.87 16 25 Si 0.90 20.92 29.54 -169.99 -5.02 15.89 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.16 1.16 5.84 -52.49 -0.31 0.86 16 33 H 0.16 1.40 7.60 -52.49 -0.40 1.00 16 34 H 0.17 2.08 6.20 -52.49 -0.33 1.76 16 35 H 0.42 3.33 8.57 -40.82 -0.35 2.98 16 36 H 0.10 1.44 8.00 -51.93 -0.42 1.02 16 37 H 0.06 0.89 6.94 -51.93 -0.36 0.53 16 38 H 0.08 1.62 6.53 -51.93 -0.34 1.28 16 39 H 0.06 1.09 5.82 -51.93 -0.30 0.79 16 40 H 0.01 0.27 6.28 -51.93 -0.33 -0.06 16 41 H 0.01 0.13 6.75 -51.93 -0.35 -0.23 16 42 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 43 H 0.03 0.74 6.39 -51.92 -0.33 0.40 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -30.76 363.67 -7.56 -38.32 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.25 Total: 2.11 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.22 Total: -3.50 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.34 Total: -42.01 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.22 Total: -16.30 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.76 -7.56 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.936 kcal (2) G-P(sol) polarization free energy of solvation -30.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds