Wall clock time and date at job start Tue Mar 31 2020 21:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35973 * 117.00475 * 2 1 4 4 C 1.38543 * 120.08013 * 359.97438 * 3 2 1 5 5 C 1.38249 * 120.01683 * 180.02562 * 4 3 2 6 6 N 1.48010 * 119.91381 * 179.97438 * 5 4 3 7 7 O 1.21800 * 120.00181 * 359.97438 * 6 5 4 8 8 O 1.21800 * 120.00364 * 179.97438 * 6 5 4 9 9 C 1.38279 * 120.17414 * 359.95221 * 5 4 3 10 10 C 1.38200 * 120.16795 * 359.77141 * 9 5 4 11 11 C 1.38721 * 119.97973 * 0.52815 * 10 9 5 12 12 N 1.40127 * 120.09149 * 179.72112 * 11 10 9 13 13 C 1.34779 * 119.99469 * 34.63385 * 12 11 10 14 14 O 1.21293 * 120.00449 * 355.54334 * 13 12 11 15 15 C 1.50700 * 119.99894 * 175.55031 * 13 12 11 16 16 N 1.46904 * 109.47304 * 179.97438 * 15 13 12 17 17 C 1.46898 * 110.99732 * 66.04491 * 16 15 13 18 18 C 1.46897 * 110.99878 * 190.00145 * 16 15 13 19 19 H 1.08994 * 109.47433 * 55.00270 * 18 16 15 20 20 C 1.53003 * 109.47050 * 294.99915 * 18 16 15 21 21 C 1.50703 * 109.46798 * 175.00473 * 18 16 15 22 22 H 1.07998 * 120.00173 * 359.97438 * 21 18 16 23 23 C 1.37881 * 119.99781 * 180.02562 * 21 18 16 24 24 N 1.31512 * 120.00060 * 359.97438 * 23 21 18 25 25 Si 1.86805 * 119.99824 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.46911 * 59.99636 * 25 23 21 27 27 H 1.48495 * 109.46840 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46803 * 299.99950 * 25 23 21 29 29 H 1.08995 * 109.47600 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47115 * 300.00140 * 1 2 3 31 31 H 1.09003 * 109.46882 * 59.99973 * 1 2 3 32 32 H 1.08001 * 119.99487 * 0.02577 * 4 3 2 33 33 H 1.08001 * 119.91854 * 180.02562 * 9 5 4 34 34 H 1.07994 * 120.01109 * 180.25195 * 10 9 5 35 35 H 0.96995 * 120.00101 * 214.63369 * 12 11 10 36 36 H 1.09005 * 109.47246 * 59.99830 * 15 13 12 37 37 H 1.08997 * 109.47139 * 299.99715 * 15 13 12 38 38 H 1.09001 * 109.46922 * 183.95421 * 17 16 15 39 39 H 1.08999 * 109.47325 * 303.95411 * 17 16 15 40 40 H 1.09002 * 109.46903 * 63.95602 * 17 16 15 41 41 H 1.08992 * 109.47065 * 60.00429 * 20 18 16 42 42 H 1.09002 * 109.47049 * 180.02562 * 20 18 16 43 43 H 1.09007 * 109.47061 * 300.00233 * 20 18 16 44 44 H 0.96997 * 119.99619 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2935 2.3745 -0.0005 5 6 1.9226 3.6056 -0.0011 6 7 1.1161 4.8466 -0.0022 7 8 -0.1002 4.7825 -0.0032 8 8 1.6687 5.9321 -0.0022 9 6 3.3034 3.6805 -0.0001 10 6 4.0616 2.5251 0.0062 11 6 3.4374 1.2863 0.0005 12 7 4.2039 0.1133 0.0010 13 6 5.3736 0.0730 0.6694 14 8 5.8023 1.0746 1.2026 15 6 6.1490 -1.2164 0.7541 16 7 7.3778 -0.9989 1.5292 17 6 7.0676 -0.6849 2.9303 18 6 8.2719 -2.1606 1.4355 19 1 8.4705 -2.3827 0.3870 20 6 7.6074 -3.3702 2.0960 21 6 9.5692 -1.8541 2.1385 22 1 9.7150 -0.8923 2.6076 23 6 10.5703 -2.8011 2.1819 24 7 10.3929 -3.9721 1.6103 25 14 12.1786 -2.4208 3.0527 26 1 11.9085 -2.1185 4.4813 27 1 13.0824 -3.5953 2.9581 28 1 12.8230 -1.2466 2.4115 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2149 2.3195 -0.0005 33 1 3.7905 4.6444 -0.0001 34 1 5.1398 2.5866 0.0111 35 1 3.8927 -0.6696 -0.4797 36 1 6.4080 -1.5513 -0.2504 37 1 5.5394 -1.9754 1.2443 38 1 7.9904 -0.4597 3.4650 39 1 6.4042 0.1790 2.9708 40 1 6.5782 -1.5410 3.3948 41 1 6.6692 -3.5920 1.5876 42 1 8.2710 -4.2322 2.0269 43 1 7.4088 -3.1481 3.1446 44 1 11.0971 -4.6385 1.6411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129579828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:12 Heat of formation + Delta-G solvation = -43.352466 kcal Electronic energy + Delta-G solvation = -28957.067142 eV Core-core repulsion = 24685.588931 eV Total energy + Delta-G solvation = -4271.478211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.33129 -42.11893 -40.74434 -38.90061 -38.29511 -37.70636 -36.13892 -34.70521 -32.38162 -31.65724 -30.85922 -29.18919 -28.65953 -27.28631 -27.02808 -25.65379 -24.13783 -23.47444 -21.94880 -21.03367 -20.77799 -19.85064 -19.11514 -18.66797 -18.51370 -18.02110 -17.97946 -17.30964 -16.97686 -16.70675 -16.43658 -15.97631 -15.81310 -15.46627 -15.17396 -14.73818 -14.48672 -14.35745 -14.30664 -14.08568 -13.42314 -13.28651 -12.91727 -12.81820 -12.80854 -12.67063 -12.62826 -12.56833 -12.38636 -12.33205 -12.32629 -12.28019 -12.01789 -11.92088 -11.79922 -11.01831 -10.78176 -10.47739 -10.19068 -9.39193 -8.88556 -8.10881 -6.19886 -1.36346 -0.15089 0.14384 0.28240 1.39047 1.43874 1.44506 1.51874 1.64736 1.93584 2.18814 2.44087 3.19151 3.26038 3.36018 3.46266 3.50723 3.56840 3.95091 4.06462 4.32042 4.33571 4.34845 4.35092 4.42776 4.57540 4.58455 4.68366 4.71644 4.76256 4.83550 4.92065 4.95635 5.12959 5.14154 5.24560 5.33010 5.53714 5.71347 5.80840 5.97343 6.11515 6.21553 6.44014 6.45859 6.68342 6.91059 6.99196 7.48774 8.94749 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.021660 B = 0.002298 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.399802 B =12183.682171 C =13185.035696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.311 6.311 3 C 0.113 3.887 4 C -0.125 4.125 5 C -0.040 4.040 6 N 0.035 4.965 7 O -0.168 6.168 8 O -0.186 6.186 9 C -0.061 4.061 10 C -0.098 4.098 11 C 0.178 3.822 12 N -0.654 5.654 13 C 0.525 3.475 14 O -0.526 6.526 15 C 0.037 3.963 16 N -0.534 5.534 17 C 0.040 3.960 18 C 0.217 3.783 19 H 0.019 0.981 20 C -0.162 4.162 21 C -0.517 4.517 22 H 0.051 0.949 23 C 0.016 3.984 24 N -0.916 5.916 25 Si 0.953 3.047 26 H -0.275 1.275 27 H -0.283 1.283 28 H -0.276 1.276 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.180 0.820 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.433 0.567 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.020 0.980 41 H 0.038 0.962 42 H 0.063 0.937 43 H 0.029 0.971 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.312 6.248 -5.916 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.064 3.936 4 C -0.146 4.146 5 C -0.125 4.125 6 N 0.550 4.450 7 O -0.384 6.384 8 O -0.396 6.396 9 C -0.081 4.081 10 C -0.119 4.119 11 C 0.080 3.920 12 N -0.302 5.302 13 C 0.313 3.687 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.258 5.258 17 C -0.108 4.108 18 C 0.111 3.889 19 H 0.037 0.963 20 C -0.221 4.221 21 C -0.555 4.555 22 H 0.069 0.931 23 C -0.183 4.183 24 N -0.556 5.556 25 Si 0.779 3.221 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.201 1.201 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.197 0.803 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.273 0.727 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.122 6.339 -5.741 22.787 hybrid contribution 0.117 -0.504 0.600 0.792 sum -21.004 5.835 -5.141 22.398 Atomic orbital electron populations 1.23561 0.75197 1.06682 1.02847 1.86126 1.24258 1.23672 1.88332 1.18311 0.89687 0.85475 1.00166 1.20924 1.02985 0.88464 1.02190 1.20830 0.91480 0.83629 1.16525 1.43752 1.01307 1.03037 0.96929 1.94492 0.96308 1.94145 1.53472 1.94551 1.74389 1.16023 1.54662 1.20988 0.90079 1.01384 0.95651 1.21205 1.02110 0.88859 0.99707 1.17608 0.87571 0.87988 0.98835 1.43463 1.20679 1.14196 1.51832 1.21156 0.79860 0.91261 0.76375 1.90664 1.67449 1.36646 1.45269 1.21994 0.92369 0.92769 1.02289 1.61942 1.12474 1.39970 1.11428 1.22236 1.00549 0.98995 0.88998 1.19118 0.89908 0.84557 0.95346 0.96317 1.22236 0.98660 1.02446 0.98751 1.21331 0.99716 0.99747 1.34753 0.93074 1.25571 1.01357 0.94977 0.96380 1.69964 1.34343 1.05936 1.45350 0.85694 0.79838 0.77464 0.79107 1.20003 1.20863 1.20139 0.85283 0.91446 0.90792 0.80273 0.81659 0.82130 0.72665 0.86437 0.90154 0.93048 0.91430 0.96197 0.94321 0.91856 0.95189 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.17 16 2 O -0.31 -3.97 10.06 -93.24 -0.94 -4.91 16 3 C 0.11 1.81 6.70 22.60 0.15 1.96 16 4 C -0.13 -1.98 8.54 22.35 0.19 -1.79 16 5 C -0.04 -0.81 6.85 36.39 0.25 -0.56 16 6 N 0.03 0.83 4.45 -46.44 -0.21 0.62 16 7 O -0.17 -4.01 18.44 18.89 0.35 -3.66 16 8 O -0.19 -4.84 18.44 18.89 0.35 -4.49 16 9 C -0.06 -1.20 9.55 22.27 0.21 -0.99 16 10 C -0.10 -2.06 8.70 22.38 0.19 -1.87 16 11 C 0.18 3.47 6.32 38.19 0.24 3.71 16 12 N -0.65 -12.44 5.19 -303.13 -1.57 -14.02 16 13 C 0.52 14.03 7.37 87.66 0.65 14.67 16 14 O -0.53 -17.63 11.75 -3.07 -0.04 -17.67 16 15 C 0.04 1.07 4.89 85.56 0.42 1.49 16 16 N -0.53 -21.47 4.48 -906.03 -4.06 -25.53 16 17 C 0.04 1.58 8.53 127.69 1.09 2.67 16 18 C 0.22 10.25 2.34 44.17 0.10 10.35 16 19 H 0.02 0.97 8.03 -2.39 -0.02 0.95 16 20 C -0.16 -7.10 8.28 71.98 0.60 -6.51 16 21 C -0.52 -27.68 7.94 25.60 0.20 -27.47 16 22 H 0.05 2.81 6.75 -2.91 -0.02 2.79 16 23 C 0.02 0.86 5.30 84.66 0.45 1.31 16 24 N -0.92 -50.47 11.32 21.45 0.24 -50.23 16 25 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.33 7.66 -2.38 -0.02 0.32 16 31 H 0.07 0.26 7.66 -2.39 -0.02 0.25 16 32 H 0.18 2.05 5.84 -2.91 -0.02 2.03 16 33 H 0.17 2.91 7.60 -2.91 -0.02 2.89 16 34 H 0.16 3.88 6.20 -2.91 -0.02 3.86 16 35 H 0.43 5.68 8.57 -92.71 -0.79 4.89 16 36 H 0.12 3.06 8.00 -2.38 -0.02 3.04 16 37 H 0.08 2.08 6.94 -2.39 -0.02 2.06 16 38 H 0.05 2.22 6.53 -2.39 -0.02 2.21 16 39 H 0.07 2.51 5.82 -2.39 -0.01 2.49 16 40 H 0.02 0.74 6.28 -2.39 -0.01 0.72 16 41 H 0.04 1.41 6.75 -2.39 -0.02 1.39 16 42 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 43 H 0.03 1.30 6.39 -2.38 -0.02 1.28 16 44 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -66.25 363.67 2.29 -63.97 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.28 Total: 12.61 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 5.86 Total: -1.85 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -5.60 Total: -89.16 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.28 Total: -30.72 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.25 2.29 -63.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.613 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds