Wall clock time and date at job start Tue Mar 31 2020 22:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47026 * 2 1 4 4 C 1.46507 * 120.00363 * 269.99932 * 3 2 1 5 5 C 1.50693 * 109.47246 * 270.00126 * 4 3 2 6 6 H 1.08001 * 120.00360 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00263 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99315 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47435 * 89.99913 * 9 7 5 11 11 H 1.48501 * 109.46599 * 209.99446 * 9 7 5 12 12 H 1.48497 * 109.47550 * 329.99460 * 9 7 5 13 13 C 1.34783 * 119.99886 * 90.00687 * 3 2 1 14 14 O 1.21279 * 119.99942 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99866 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.46847 * 180.02562 * 15 13 3 17 17 C 1.39967 * 119.99646 * 180.02562 * 16 15 13 18 18 C 1.38721 * 120.09075 * 0.02562 * 17 16 15 19 19 C 1.38230 * 119.97910 * 179.97438 * 18 17 16 20 20 N 1.48008 * 119.91633 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00109 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99488 * 180.02562 * 20 19 18 23 23 C 1.38256 * 120.16014 * 359.97438 * 19 18 17 24 24 C 1.38282 * 120.18026 * 0.04127 * 23 19 18 25 25 C 1.38507 * 120.01720 * 359.95891 * 24 23 19 26 26 O 1.36017 * 120.07603 * 180.29910 * 25 24 23 27 27 C 1.42897 * 117.00243 * 359.72109 * 26 25 24 28 28 H 1.08998 * 109.47092 * 59.99663 * 1 2 3 29 29 H 1.08999 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46845 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46845 * 240.00014 * 2 1 3 32 32 H 1.08998 * 109.47092 * 120.00337 * 2 1 3 33 33 H 1.08996 * 109.46555 * 30.00219 * 4 3 2 34 34 H 1.08997 * 109.46969 * 149.99919 * 4 3 2 35 35 H 0.96998 * 119.99879 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47123 * 60.00476 * 15 13 3 37 37 H 1.09004 * 109.47152 * 300.00414 * 15 13 3 38 38 H 0.96996 * 120.00359 * 0.02562 * 16 15 13 39 39 H 1.07997 * 120.00992 * 359.95733 * 18 17 16 40 40 H 1.07994 * 119.90848 * 180.02562 * 23 19 18 41 41 H 1.07998 * 119.99002 * 179.97438 * 24 23 19 42 42 H 1.09003 * 109.47278 * 300.00632 * 27 26 25 43 43 H 1.08999 * 109.46845 * 60.00149 * 27 26 25 44 44 H 1.08998 * 109.47230 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0963 7 6 4.1491 2.3898 -2.8780 8 7 5.3910 2.1828 -3.2579 9 14 3.0127 3.4353 -3.9291 10 1 3.1161 4.8556 -3.5079 11 1 3.4057 3.3123 -5.3558 12 1 1.6130 2.9693 -3.7592 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9915 1.3061 2.4723 16 7 2.3085 2.2038 3.5858 17 6 2.1530 1.7638 4.9054 18 6 1.6995 0.4780 5.1610 19 6 1.5474 0.0457 6.4651 20 7 1.0628 -1.3263 6.7362 21 8 0.7983 -2.0727 5.8108 22 8 0.9278 -1.7085 7.8847 23 6 1.8467 0.8918 7.5168 24 6 2.2989 2.1750 7.2696 25 6 2.4541 2.6158 5.9658 26 8 2.9047 3.8757 5.7213 27 6 3.1932 4.6934 6.8571 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1410 -1.1383 35 1 5.7171 2.5733 -4.0837 36 1 2.6214 0.4185 2.5302 37 1 0.9434 1.0123 2.5299 38 1 2.6260 3.1030 3.4086 39 1 1.4651 -0.1850 4.3413 40 1 1.7267 0.5497 8.5340 41 1 2.5315 2.8335 8.0934 42 1 2.2902 4.8162 7.4552 43 1 3.9665 4.2177 7.4602 44 1 3.5424 5.6701 6.5223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176142805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:08 Heat of formation + Delta-G solvation = -36.760212 kcal Electronic energy + Delta-G solvation = -29050.109400 eV Core-core repulsion = 24778.917051 eV Total energy + Delta-G solvation = -4271.192350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.23735 -40.81488 -39.51456 -38.03921 -36.62408 -35.98390 -35.35191 -32.82212 -31.45595 -30.81323 -30.36916 -28.38835 -28.12417 -26.55482 -25.91965 -23.13823 -22.97136 -22.34297 -21.79266 -19.73151 -18.85071 -18.63556 -18.42789 -17.57865 -17.30620 -17.00715 -16.60503 -16.29851 -15.94447 -15.59360 -15.39379 -14.89172 -14.61890 -14.22600 -13.98058 -13.73933 -13.63141 -13.56030 -13.14553 -12.82536 -12.51557 -12.42637 -12.27753 -11.91322 -11.76301 -11.73814 -11.58678 -11.52027 -11.26674 -11.19915 -11.07477 -10.91797 -10.62436 -10.58375 -10.24731 -9.64871 -9.38410 -9.32951 -8.66640 -7.93090 -7.71960 -6.16218 -4.16023 -0.24869 0.78136 1.29328 1.33554 2.63778 2.92345 3.02176 3.08171 3.23228 3.29147 3.30941 3.68650 4.09828 4.32306 4.34781 4.48303 4.62454 4.68167 4.71351 4.72930 5.00942 5.05868 5.09204 5.10895 5.16591 5.17062 5.28519 5.44887 5.51933 5.54881 5.61474 5.78503 5.89077 6.05789 6.29924 6.30516 6.45590 6.60101 6.80633 6.92789 7.14830 7.49729 7.51220 7.59504 8.02530 8.36017 8.66750 8.86717 9.43113 10.97003 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.002878 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.930076 B = 9725.575324 C =11214.738591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.585 5.585 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.504 3.496 14 O -0.535 6.535 15 C 0.098 3.902 16 N -0.714 5.714 17 C 0.210 3.790 18 C -0.123 4.123 19 C -0.029 4.029 20 N 0.035 4.965 21 O -0.163 6.163 22 O -0.171 6.171 23 C -0.075 4.075 24 C -0.167 4.167 25 C 0.111 3.889 26 O -0.305 6.305 27 C 0.026 3.974 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.424 0.576 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 -0.620 21.094 23.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.316 5.316 4 C 0.097 3.903 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.290 3.710 14 O -0.413 6.413 15 C -0.030 4.030 16 N -0.347 5.347 17 C 0.103 3.897 18 C -0.148 4.148 19 C -0.113 4.113 20 N 0.553 4.447 21 O -0.379 6.379 22 O -0.384 6.384 23 C -0.096 4.096 24 C -0.187 4.187 25 C 0.061 3.939 26 O -0.217 6.217 27 C -0.069 4.069 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.264 0.736 39 H 0.175 0.825 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.611 0.688 20.403 22.156 hybrid contribution -0.384 0.436 -0.438 0.727 sum -8.994 1.124 19.965 21.926 Atomic orbital electron populations 1.22242 0.96375 1.02029 1.02282 1.21552 0.93689 0.83404 1.03623 1.47905 1.63352 1.13565 1.06771 1.19702 0.97549 0.93363 0.79731 1.21293 0.95233 1.33220 1.07313 0.90715 1.24854 0.95005 0.95756 0.97311 1.69890 1.15130 1.44767 1.23555 0.86851 0.81422 0.81548 0.79862 1.19919 1.20981 1.19047 1.20040 0.78873 0.87039 0.85066 1.90680 1.45887 1.18026 1.86678 1.21328 1.02041 0.93761 0.85897 1.44424 1.72162 1.18081 1.00015 1.16790 0.97591 0.90974 0.84377 1.20123 1.03827 0.95081 0.95764 1.20566 1.11755 0.83469 0.95529 1.43540 0.97928 1.02861 1.00410 1.94541 1.53328 1.52264 1.37793 1.94513 1.57191 1.79792 1.06942 1.20518 0.97792 0.92270 0.99060 1.20934 1.05708 0.96756 0.95311 1.18805 0.97354 0.85448 0.92336 1.86138 1.79389 1.21239 1.34923 1.23190 1.00740 0.94797 0.88191 0.92082 0.91517 0.92995 0.89201 0.91159 0.94928 0.94512 0.92461 0.89019 0.89202 0.73579 0.82471 0.83144 0.83203 0.92205 0.92136 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 10.24 37.16 0.38 -1.58 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.40 16 3 N -0.58 -11.07 2.46 -175.06 -0.43 -11.50 16 4 C 0.22 5.04 4.23 -5.19 -0.02 5.02 16 5 C -0.53 -14.79 9.94 -34.44 -0.34 -15.14 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 9 Si 0.88 21.02 27.47 -169.99 -4.67 16.36 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 13 C 0.50 9.36 7.74 -10.98 -0.09 9.28 16 14 O -0.54 -12.11 15.25 5.56 0.08 -12.03 16 15 C 0.10 1.30 3.95 -5.19 -0.02 1.28 16 16 N -0.71 -9.55 5.70 -59.67 -0.34 -9.89 16 17 C 0.21 2.43 6.67 -83.56 -0.56 1.88 16 18 C -0.12 -1.36 8.82 -39.41 -0.35 -1.71 16 19 C -0.03 -0.33 6.85 -79.95 -0.55 -0.87 16 20 N 0.04 0.46 4.45 33.96 0.15 0.61 16 21 O -0.16 -2.27 18.44 -29.46 -0.54 -2.82 16 22 O -0.17 -2.27 18.44 -29.46 -0.54 -2.81 16 23 C -0.07 -0.66 9.55 -39.56 -0.38 -1.04 16 24 C -0.17 -1.31 9.04 -39.47 -0.36 -1.66 16 25 C 0.11 1.13 6.70 -39.08 -0.26 0.86 16 26 O -0.30 -3.06 9.74 -19.80 -0.19 -3.25 16 27 C 0.03 0.14 9.81 101.05 0.99 1.13 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 31 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.56 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.10 7.21 -51.93 -0.37 0.72 16 37 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 38 H 0.42 6.39 6.80 -40.82 -0.28 6.11 16 39 H 0.16 1.63 6.28 -52.49 -0.33 1.30 16 40 H 0.15 1.08 7.60 -52.49 -0.40 0.68 16 41 H 0.15 0.70 6.30 -52.49 -0.33 0.37 16 42 H 0.06 0.24 7.67 -51.93 -0.40 -0.16 16 43 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 44 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -34.37 374.62 -7.31 -41.69 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.58 Total: 3.50 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.67 Total: 0.84 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.15 Total: -47.11 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.19 Total: -20.91 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.37 -7.31 -41.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176142805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.927 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds