Wall clock time and date at job start Tue Mar 31 2020 22:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46492 * 109.47026 * 2 1 4 4 C 1.46507 * 120.00363 * 269.99932 * 3 2 1 5 5 C 1.50693 * 109.47246 * 270.00126 * 4 3 2 6 6 H 1.08001 * 120.00360 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00263 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00347 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99315 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47435 * 89.99913 * 9 7 5 11 11 H 1.48501 * 109.46599 * 209.99446 * 9 7 5 12 12 H 1.48497 * 109.47550 * 329.99460 * 9 7 5 13 13 C 1.34783 * 119.99886 * 90.00687 * 3 2 1 14 14 O 1.21279 * 119.99942 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99866 * 359.97438 * 13 3 2 16 16 N 1.46499 * 109.46847 * 180.02562 * 15 13 3 17 17 C 1.39967 * 119.99646 * 180.02562 * 16 15 13 18 18 C 1.38721 * 120.09075 * 0.02562 * 17 16 15 19 19 C 1.38230 * 119.97910 * 179.97438 * 18 17 16 20 20 N 1.48008 * 119.91633 * 179.97438 * 19 18 17 21 21 O 1.21797 * 120.00109 * 359.97438 * 20 19 18 22 22 O 1.21800 * 119.99488 * 180.02562 * 20 19 18 23 23 C 1.38256 * 120.16014 * 359.97438 * 19 18 17 24 24 C 1.38282 * 120.18026 * 0.04127 * 23 19 18 25 25 C 1.38507 * 120.01720 * 359.95891 * 24 23 19 26 26 O 1.36017 * 120.07603 * 180.29910 * 25 24 23 27 27 C 1.42897 * 117.00243 * 359.72109 * 26 25 24 28 28 H 1.08998 * 109.47092 * 59.99663 * 1 2 3 29 29 H 1.08999 * 109.46809 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46845 * 299.99986 * 1 2 3 31 31 H 1.09002 * 109.46845 * 240.00014 * 2 1 3 32 32 H 1.08998 * 109.47092 * 120.00337 * 2 1 3 33 33 H 1.08996 * 109.46555 * 30.00219 * 4 3 2 34 34 H 1.08997 * 109.46969 * 149.99919 * 4 3 2 35 35 H 0.96998 * 119.99879 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47123 * 60.00476 * 15 13 3 37 37 H 1.09004 * 109.47152 * 300.00414 * 15 13 3 38 38 H 0.96996 * 120.00359 * 0.02562 * 16 15 13 39 39 H 1.07997 * 120.00992 * 359.95733 * 18 17 16 40 40 H 1.07994 * 119.90848 * 180.02562 * 23 19 18 41 41 H 1.07998 * 119.99002 * 179.97438 * 24 23 19 42 42 H 1.09003 * 109.47278 * 300.00632 * 27 26 25 43 43 H 1.08999 * 109.46845 * 60.00149 * 27 26 25 44 44 H 1.08998 * 109.47230 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3427 1.2303 -1.0963 7 6 4.1491 2.3898 -2.8780 8 7 5.3910 2.1828 -3.2579 9 14 3.0127 3.4353 -3.9291 10 1 3.1161 4.8556 -3.5079 11 1 3.4057 3.3123 -5.3558 12 1 1.6130 2.9693 -3.7592 13 6 2.2431 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9915 1.3061 2.4723 16 7 2.3085 2.2038 3.5858 17 6 2.1530 1.7638 4.9054 18 6 1.6995 0.4780 5.1610 19 6 1.5474 0.0457 6.4651 20 7 1.0628 -1.3263 6.7362 21 8 0.7983 -2.0727 5.8108 22 8 0.9278 -1.7085 7.8847 23 6 1.8467 0.8918 7.5168 24 6 2.2989 2.1750 7.2696 25 6 2.4541 2.6158 5.9658 26 8 2.9047 3.8757 5.7213 27 6 3.1932 4.6934 6.8571 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1410 -1.1383 35 1 5.7171 2.5733 -4.0837 36 1 2.6214 0.4185 2.5302 37 1 0.9434 1.0123 2.5299 38 1 2.6260 3.1030 3.4086 39 1 1.4651 -0.1850 4.3413 40 1 1.7267 0.5497 8.5340 41 1 2.5315 2.8335 8.0934 42 1 2.2902 4.8162 7.4552 43 1 3.9665 4.2177 7.4602 44 1 3.5424 5.6701 6.5223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176142805.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:07 Heat of formation + Delta-G solvation = -60.093384 kcal Electronic energy + Delta-G solvation = -29051.121203 eV Core-core repulsion = 24778.917051 eV Total energy + Delta-G solvation = -4272.204152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.16444 -41.62838 -40.88146 -38.80779 -37.59429 -37.27370 -36.50657 -34.87881 -32.29554 -32.06100 -31.44994 -29.86003 -28.72955 -27.79277 -26.78161 -24.55433 -24.21846 -23.20973 -22.91631 -20.69823 -19.99714 -19.63155 -19.25510 -19.13248 -18.51824 -18.31972 -17.82270 -17.15516 -16.97400 -16.66540 -16.48785 -16.23503 -15.75221 -15.44407 -14.87750 -14.76246 -14.73772 -14.54316 -14.36140 -14.13344 -13.89135 -13.68377 -13.37686 -13.20281 -13.08727 -12.63472 -12.56652 -12.42197 -12.31142 -12.30660 -12.21346 -12.19030 -12.07614 -11.97326 -11.76723 -11.50289 -10.87599 -10.84841 -10.10115 -9.52354 -8.59503 -8.36213 -6.41729 -1.14669 0.05268 0.41105 0.46161 1.31511 1.34914 1.43409 1.58904 1.80713 2.06903 2.28772 2.30369 2.43877 2.98235 3.40485 3.43341 3.68381 3.72278 3.86675 4.03798 4.15823 4.20371 4.25669 4.34541 4.39413 4.39750 4.39990 4.61294 4.71498 4.76817 4.80245 4.85566 4.87379 4.97804 5.01338 5.04464 5.37820 5.40025 5.43656 5.54932 5.72280 6.14814 6.19976 6.44267 6.59329 6.59750 6.61279 7.13847 7.27170 8.80678 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.002878 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.930076 B = 9725.575324 C =11214.738591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.237 1.237 13 C 0.496 3.504 14 O -0.585 6.585 15 C 0.113 3.887 16 N -0.728 5.728 17 C 0.190 3.810 18 C -0.122 4.122 19 C -0.048 4.048 20 N 0.038 4.962 21 O -0.194 6.194 22 O -0.174 6.174 23 C -0.060 4.060 24 C -0.154 4.154 25 C 0.113 3.887 26 O -0.328 6.328 27 C 0.013 3.987 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.269 0.731 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 -0.367 23.068 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.323 5.323 4 C 0.104 3.896 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.201 1.201 12 H -0.160 1.160 13 C 0.284 3.716 14 O -0.466 6.466 15 C -0.014 4.014 16 N -0.361 5.361 17 C 0.084 3.916 18 C -0.147 4.147 19 C -0.133 4.133 20 N 0.551 4.449 21 O -0.403 6.403 22 O -0.389 6.389 23 C -0.081 4.081 24 C -0.174 4.174 25 C 0.063 3.937 26 O -0.241 6.241 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.178 0.822 40 H 0.190 0.810 41 H 0.206 0.794 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.663 0.854 22.396 24.820 hybrid contribution 0.362 0.411 -0.875 1.032 sum -10.301 1.265 21.522 23.893 Atomic orbital electron populations 1.22175 0.93752 1.03883 1.02211 1.21878 0.95783 0.80783 1.04455 1.47991 1.63408 1.15271 1.05598 1.19332 0.94879 0.93098 0.82322 1.21549 0.97059 1.32180 1.06781 0.95233 1.25845 0.96677 0.97188 0.98947 1.70047 1.17459 1.46504 1.24489 0.85727 0.80512 0.78994 0.77791 1.20185 1.20130 1.16012 1.20941 0.77482 0.86667 0.86549 1.90643 1.47972 1.20393 1.87593 1.21262 1.03999 0.93184 0.82983 1.44359 1.73469 1.17583 1.00678 1.16923 0.99057 0.91620 0.83960 1.20135 1.03603 0.94937 0.96070 1.20709 1.13454 0.82788 0.96306 1.43779 0.97564 1.03457 1.00129 1.94533 1.54735 1.53177 1.37882 1.94488 1.57142 1.80220 1.07060 1.20884 0.95720 0.92032 0.99480 1.21294 1.04131 0.96623 0.95338 1.19043 0.96375 0.85503 0.92823 1.86135 1.79152 1.21396 1.37411 1.23534 1.02344 0.94639 0.87548 0.93278 0.88644 0.91943 0.90494 0.88339 0.93080 0.96171 0.92252 0.87610 0.86282 0.74814 0.82204 0.81028 0.79448 0.90131 0.90409 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.24 71.98 0.74 -2.57 16 2 C 0.09 2.51 5.93 86.38 0.51 3.02 16 3 N -0.59 -22.46 2.46 -826.17 -2.03 -24.49 16 4 C 0.23 10.60 4.23 85.63 0.36 10.96 16 5 C -0.54 -30.96 9.94 25.60 0.25 -30.71 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.67 5.47 84.66 0.46 1.14 16 8 N -0.94 -59.24 13.96 21.45 0.30 -58.95 16 9 Si 0.95 43.69 27.47 68.60 1.88 45.58 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.24 -9.75 6.54 99.48 0.65 -9.09 16 13 C 0.50 18.60 7.74 87.66 0.68 19.28 16 14 O -0.59 -27.44 15.25 -3.02 -0.05 -27.49 16 15 C 0.11 2.90 3.95 85.63 0.34 3.24 16 16 N -0.73 -19.23 5.70 -342.69 -1.95 -21.19 16 17 C 0.19 4.17 6.67 38.22 0.25 4.42 16 18 C -0.12 -2.54 8.82 22.38 0.20 -2.34 16 19 C -0.05 -0.99 6.85 36.38 0.25 -0.74 16 20 N 0.04 0.93 4.45 -46.46 -0.21 0.72 16 21 O -0.19 -5.27 18.44 18.89 0.35 -4.92 16 22 O -0.17 -4.37 18.44 18.89 0.35 -4.02 16 23 C -0.06 -0.88 9.55 22.28 0.21 -0.66 16 24 C -0.15 -1.86 9.04 22.34 0.20 -1.66 16 25 C 0.11 2.06 6.70 22.59 0.15 2.21 16 26 O -0.33 -6.08 9.74 -93.75 -0.91 -7.00 16 27 C 0.01 0.11 9.81 113.37 1.11 1.22 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.15 7.22 -2.39 -0.02 1.13 16 31 H 0.08 2.27 8.07 -2.39 -0.02 2.26 16 32 H 0.10 2.08 6.44 -2.39 -0.02 2.07 16 33 H 0.05 2.21 7.13 -2.39 -0.02 2.19 16 34 H 0.02 1.02 6.85 -2.39 -0.02 1.00 16 35 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 36 H 0.11 2.40 7.21 -2.39 -0.02 2.39 16 37 H 0.12 2.34 7.00 -2.38 -0.02 2.32 16 38 H 0.41 12.76 6.80 -92.71 -0.63 12.13 16 39 H 0.16 3.10 6.28 -2.91 -0.02 3.08 16 40 H 0.17 1.80 7.60 -2.91 -0.02 1.77 16 41 H 0.19 0.80 6.30 -2.91 -0.02 0.79 16 42 H 0.08 0.35 7.67 -2.39 -0.02 0.33 16 43 H 0.08 0.39 7.66 -2.39 -0.02 0.37 16 44 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -79.66 374.62 3.82 -75.84 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.37 Total: 19.09 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.73 Total: 6.82 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.89 Total: -103.90 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.26 Total: -43.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.88 Total: 45.58 kcal Total: -79.66 3.82 -75.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176142805.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.745 kcal (2) G-P(sol) polarization free energy of solvation -79.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds