Wall clock time and date at job start Tue Mar 31 2020 22:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47062 * 2 1 4 4 C 1.38932 * 120.00264 * 180.02562 * 3 2 1 5 5 C 1.38949 * 120.15938 * 5.66972 * 4 3 2 6 6 C 1.37956 * 120.07620 * 179.97438 * 5 4 3 7 7 C 1.38692 * 120.41390 * 359.97438 * 6 5 4 8 8 Cl 1.73601 * 119.83896 * 180.02562 * 7 6 5 9 9 C 1.37852 * 120.32492 * 359.74496 * 7 6 5 10 10 C 1.39744 * 119.91081 * 0.51233 * 9 7 6 11 11 C 1.47431 * 120.19947 * 179.76210 * 10 9 7 12 12 O 1.21596 * 120.00188 * 230.23989 * 11 10 9 13 13 N 1.34779 * 119.99873 * 50.25015 * 11 10 9 14 14 C 1.46961 * 120.59642 * 185.31522 * 13 11 10 15 15 C 1.53376 * 108.63564 * 235.20199 * 14 13 11 16 16 N 1.46959 * 108.63161 * 310.57416 * 15 14 13 17 17 C 1.36941 * 120.59034 * 235.20261 * 16 15 14 18 18 H 1.07991 * 120.00034 * 30.86969 * 17 16 15 19 19 C 1.38813 * 119.99662 * 211.14947 * 17 16 15 20 20 N 1.31618 * 120.00549 * 10.25254 * 19 17 16 21 21 Si 1.86806 * 119.99647 * 190.25698 * 19 17 16 22 22 H 1.48504 * 109.46963 * 89.99895 * 21 19 17 23 23 H 1.48502 * 109.47032 * 209.99522 * 21 19 17 24 24 H 1.48490 * 109.47132 * 329.99744 * 21 19 17 25 25 C 1.46967 * 118.81631 * 55.47707 * 16 15 14 26 26 C 1.46967 * 120.59574 * 5.28763 * 13 11 10 27 27 H 1.09001 * 109.46803 * 300.00022 * 1 2 3 28 28 H 1.08999 * 109.46936 * 59.99984 * 1 2 3 29 29 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46803 * 239.99978 * 2 1 3 31 31 H 1.08999 * 109.46936 * 120.00016 * 2 1 3 32 32 H 0.96998 * 120.00315 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.96224 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79204 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.04729 * 180.27556 * 9 7 6 36 36 H 1.08998 * 109.61534 * 115.45686 * 14 13 11 37 37 H 1.09009 * 109.60705 * 354.94142 * 14 13 11 38 38 H 1.08998 * 109.60775 * 190.82607 * 15 14 13 39 39 H 1.09005 * 109.60738 * 70.31687 * 15 14 13 40 40 H 0.96997 * 120.00171 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.60391 * 64.26567 * 25 16 15 42 42 H 1.09001 * 109.61096 * 184.77392 * 25 16 15 43 43 H 1.08999 * 109.60852 * 244.54731 * 26 13 11 44 44 H 1.09005 * 109.60519 * 5.05394 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3843 1.6351 -0.0005 5 6 4.2891 0.5874 -0.1198 6 6 5.6450 0.8415 -0.1206 7 6 6.1159 2.1408 -0.0034 8 17 7.8253 2.4437 -0.0069 9 6 5.2331 3.1935 0.1100 10 6 3.8569 2.9511 0.1178 11 6 2.9072 4.0716 0.2441 12 8 2.0185 4.0251 1.0727 13 7 3.0239 5.1476 -0.5591 14 6 2.1594 6.3207 -0.3685 15 6 1.4399 6.6192 -1.6897 16 7 2.4344 6.6406 -2.7714 17 6 2.5530 7.7339 -3.5875 18 1 2.3325 8.7195 -3.2052 19 6 2.9510 7.5746 -4.9078 20 7 3.0193 6.3700 -5.4338 21 14 3.3898 9.0699 -5.9379 22 1 4.8392 9.3605 -5.7962 23 1 3.0766 8.7978 -7.3638 24 1 2.6025 10.2398 -5.4727 25 6 3.2953 5.4654 -2.9657 26 6 4.0184 5.1692 -1.6409 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3881 2.1185 -0.0004 33 1 3.9304 -0.4271 -0.2119 34 1 6.3442 0.0237 -0.2140 35 1 5.6046 4.2039 0.1965 36 1 2.7658 7.1792 -0.0802 37 1 1.4245 6.1110 0.4090 38 1 0.9468 7.5892 -1.6267 39 1 0.7010 5.8426 -1.8874 40 1 3.2978 6.2587 -6.3562 41 1 2.6853 4.6086 -3.2522 42 1 4.0277 5.6734 -3.7456 43 1 4.7573 5.9457 -1.4431 44 1 4.5115 4.1991 -1.7039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192219700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:21 Heat of formation + Delta-G solvation = 15.081316 kcal Electronic energy + Delta-G solvation = -27554.336116 eV Core-core repulsion = 23726.100948 eV Total energy + Delta-G solvation = -3828.235168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.47660 -38.64071 -36.97171 -36.57426 -35.72627 -33.88878 -32.00880 -31.51536 -30.79796 -30.01191 -28.08959 -26.91193 -24.47321 -23.78321 -23.15136 -22.49180 -21.39409 -20.56597 -19.01050 -17.62926 -17.26691 -16.45935 -16.15849 -15.81570 -15.24782 -15.14210 -14.82506 -14.58744 -14.32147 -14.07121 -13.68595 -13.51182 -13.39652 -13.31552 -13.15832 -12.76842 -12.41099 -12.27923 -12.18100 -11.95658 -11.68632 -11.53202 -11.35053 -11.25750 -10.92100 -10.88403 -10.73866 -10.52709 -10.22418 -10.10544 -9.89897 -9.84200 -9.54291 -8.98288 -8.60545 -8.29102 -7.47001 -6.69578 -5.86133 -3.36448 0.99915 1.34577 2.23091 2.91845 3.30305 3.32968 3.36869 3.40322 3.41471 3.73346 4.41997 4.62676 4.72149 4.76122 4.87796 5.01787 5.13779 5.21545 5.30446 5.33741 5.35652 5.52088 5.69070 5.72715 5.79707 5.84444 5.86374 5.88175 5.92839 6.02262 6.14309 6.17859 6.21039 6.35884 6.42263 6.50302 6.75044 6.89910 7.14742 7.22090 7.50418 7.58004 7.69561 7.87032 8.36804 8.46740 9.11602 9.72055 10.29889 11.20667 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003881 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.256119 B = 7213.720578 C = 8630.967068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.117 3.883 3 N -0.729 5.729 4 C 0.269 3.731 5 C -0.195 4.195 6 C -0.042 4.042 7 C -0.102 4.102 8 Cl -0.079 7.079 9 C -0.025 4.025 10 C -0.192 4.192 11 C 0.561 3.439 12 O -0.559 6.559 13 N -0.586 5.586 14 C 0.094 3.906 15 C 0.132 3.868 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.905 5.905 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.160 3.840 26 C 0.074 3.926 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.410 0.590 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.021 0.979 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -13.394 10.831 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.358 5.358 4 C 0.160 3.840 5 C -0.218 4.218 6 C -0.062 4.062 7 C -0.131 4.131 8 Cl -0.051 7.051 9 C -0.044 4.044 10 C -0.200 4.200 11 C 0.349 3.651 12 O -0.439 6.439 13 N -0.316 5.316 14 C -0.030 4.030 15 C 0.005 3.995 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.550 5.550 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.033 3.967 26 C -0.049 4.049 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.328 -13.594 11.049 17.672 hybrid contribution 0.260 1.034 -0.732 1.293 sum 2.588 -12.560 10.317 16.458 Atomic orbital electron populations 1.21975 0.94331 1.02951 1.03113 1.21373 0.95017 0.83138 1.01226 1.44852 1.03534 1.08293 1.79076 1.17680 0.84672 0.91741 0.89944 1.20497 0.91902 0.98198 1.11236 1.20841 0.95157 0.94961 0.95234 1.20364 0.84515 0.94523 1.13657 1.98346 1.12946 1.96279 1.97506 1.20913 0.90591 0.98816 0.94120 1.19240 0.93416 0.92391 1.14959 1.18063 0.84032 0.82050 0.80946 1.90720 1.35474 1.80450 1.37303 1.48039 1.36811 1.15706 1.31088 1.22261 0.94113 0.86499 1.00090 1.21295 0.91342 0.99404 0.87455 1.43985 1.36840 1.16204 1.34392 1.19226 1.42552 0.86330 0.90383 0.91517 1.25174 1.01297 0.96549 0.96311 1.69930 1.50903 1.20369 1.13774 0.86221 0.78399 0.82185 0.79524 1.21291 1.21647 1.20384 1.21316 0.94420 0.88849 0.92119 1.22967 0.91196 1.01256 0.89529 0.91754 0.91748 0.90824 0.91914 0.91980 0.75171 0.84859 0.84904 0.84582 0.91755 0.89937 0.91497 0.95977 0.93418 0.96039 0.87674 0.91754 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.03 37.16 0.37 -0.98 16 2 C 0.12 1.08 5.66 -4.04 -0.02 1.05 16 3 N -0.73 -9.44 5.53 -58.44 -0.32 -9.76 16 4 C 0.27 3.71 6.64 -83.60 -0.55 3.15 16 5 C -0.20 -2.21 9.30 -39.42 -0.37 -2.58 16 6 C -0.04 -0.47 9.80 -39.52 -0.39 -0.86 16 7 C -0.10 -1.28 6.31 -39.55 -0.25 -1.53 16 8 Cl -0.08 -0.94 28.94 -51.86 -1.50 -2.44 16 9 C -0.02 -0.34 7.34 -39.16 -0.29 -0.63 16 10 C -0.19 -2.96 4.79 -104.81 -0.50 -3.46 16 11 C 0.56 9.96 6.56 -12.52 -0.08 9.88 16 12 O -0.56 -10.94 15.13 5.28 0.08 -10.86 16 13 N -0.59 -10.68 2.95 -173.48 -0.51 -11.19 16 14 C 0.09 1.72 6.60 -3.60 -0.02 1.69 16 15 C 0.13 2.74 6.67 -3.60 -0.02 2.71 16 16 N -0.59 -14.32 2.96 -171.77 -0.51 -14.82 16 17 C -0.26 -6.74 9.59 -15.06 -0.14 -6.88 16 18 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 19 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 20 N -0.91 -25.33 10.95 55.49 0.61 -24.72 16 21 Si 0.91 21.05 29.57 -169.99 -5.03 16.03 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.16 3.66 5.50 -3.37 -0.02 3.64 16 26 C 0.07 1.38 5.57 -3.37 -0.02 1.36 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 31 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 32 H 0.41 6.05 6.50 -40.82 -0.27 5.79 16 33 H 0.13 1.17 6.72 -52.49 -0.35 0.82 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 1.87 7.46 -52.48 -0.39 1.48 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.08 1.45 6.99 -51.92 -0.36 1.09 16 38 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.11 2.68 5.95 -51.93 -0.31 2.37 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.08 1.30 5.11 -51.93 -0.27 1.04 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -29.79 366.49 -10.17 -39.96 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.11 Total: 5.67 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.40 Total: 6.61 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.74 Total: -60.50 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.79 -10.17 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192219700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.038 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds