Wall clock time and date at job start Tue Mar 31 2020 22:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47062 * 2 1 4 4 C 1.38932 * 120.00264 * 180.02562 * 3 2 1 5 5 C 1.38949 * 120.15938 * 5.66972 * 4 3 2 6 6 C 1.37956 * 120.07620 * 179.97438 * 5 4 3 7 7 C 1.38692 * 120.41390 * 359.97438 * 6 5 4 8 8 Cl 1.73601 * 119.83896 * 180.02562 * 7 6 5 9 9 C 1.37852 * 120.32492 * 359.74496 * 7 6 5 10 10 C 1.39744 * 119.91081 * 0.51233 * 9 7 6 11 11 C 1.47431 * 120.19947 * 179.76210 * 10 9 7 12 12 O 1.21596 * 120.00188 * 230.23989 * 11 10 9 13 13 N 1.34779 * 119.99873 * 50.25015 * 11 10 9 14 14 C 1.46961 * 120.59642 * 185.31522 * 13 11 10 15 15 C 1.53376 * 108.63564 * 235.20199 * 14 13 11 16 16 N 1.46959 * 108.63161 * 310.57416 * 15 14 13 17 17 C 1.36941 * 120.59034 * 235.20261 * 16 15 14 18 18 H 1.07991 * 120.00034 * 30.86969 * 17 16 15 19 19 C 1.38813 * 119.99662 * 211.14947 * 17 16 15 20 20 N 1.31618 * 120.00549 * 10.25254 * 19 17 16 21 21 Si 1.86806 * 119.99647 * 190.25698 * 19 17 16 22 22 H 1.48504 * 109.46963 * 89.99895 * 21 19 17 23 23 H 1.48502 * 109.47032 * 209.99522 * 21 19 17 24 24 H 1.48490 * 109.47132 * 329.99744 * 21 19 17 25 25 C 1.46967 * 118.81631 * 55.47707 * 16 15 14 26 26 C 1.46967 * 120.59574 * 5.28763 * 13 11 10 27 27 H 1.09001 * 109.46803 * 300.00022 * 1 2 3 28 28 H 1.08999 * 109.46936 * 59.99984 * 1 2 3 29 29 H 1.08999 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46803 * 239.99978 * 2 1 3 31 31 H 1.08999 * 109.46936 * 120.00016 * 2 1 3 32 32 H 0.96998 * 120.00315 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.96224 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.79204 * 180.02562 * 6 5 4 35 35 H 1.08003 * 120.04729 * 180.27556 * 9 7 6 36 36 H 1.08998 * 109.61534 * 115.45686 * 14 13 11 37 37 H 1.09009 * 109.60705 * 354.94142 * 14 13 11 38 38 H 1.08998 * 109.60775 * 190.82607 * 15 14 13 39 39 H 1.09005 * 109.60738 * 70.31687 * 15 14 13 40 40 H 0.96997 * 120.00171 * 180.02562 * 20 19 17 41 41 H 1.09005 * 109.60391 * 64.26567 * 25 16 15 42 42 H 1.09001 * 109.61096 * 184.77392 * 25 16 15 43 43 H 1.08999 * 109.60852 * 244.54731 * 26 13 11 44 44 H 1.09005 * 109.60519 * 5.05394 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3843 1.6351 -0.0005 5 6 4.2891 0.5874 -0.1198 6 6 5.6450 0.8415 -0.1206 7 6 6.1159 2.1408 -0.0034 8 17 7.8253 2.4437 -0.0069 9 6 5.2331 3.1935 0.1100 10 6 3.8569 2.9511 0.1178 11 6 2.9072 4.0716 0.2441 12 8 2.0185 4.0251 1.0727 13 7 3.0239 5.1476 -0.5591 14 6 2.1594 6.3207 -0.3685 15 6 1.4399 6.6192 -1.6897 16 7 2.4344 6.6406 -2.7714 17 6 2.5530 7.7339 -3.5875 18 1 2.3325 8.7195 -3.2052 19 6 2.9510 7.5746 -4.9078 20 7 3.0193 6.3700 -5.4338 21 14 3.3898 9.0699 -5.9379 22 1 4.8392 9.3605 -5.7962 23 1 3.0766 8.7978 -7.3638 24 1 2.6025 10.2398 -5.4727 25 6 3.2953 5.4654 -2.9657 26 6 4.0184 5.1692 -1.6409 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3881 2.1185 -0.0004 33 1 3.9304 -0.4271 -0.2119 34 1 6.3442 0.0237 -0.2140 35 1 5.6046 4.2039 0.1965 36 1 2.7658 7.1792 -0.0802 37 1 1.4245 6.1110 0.4090 38 1 0.9468 7.5892 -1.6267 39 1 0.7010 5.8426 -1.8874 40 1 3.2978 6.2587 -6.3562 41 1 2.6853 4.6086 -3.2522 42 1 4.0277 5.6734 -3.7456 43 1 4.7573 5.9457 -1.4431 44 1 4.5115 4.1991 -1.7039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192219700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:20 Heat of formation + Delta-G solvation = -1.565698 kcal Electronic energy + Delta-G solvation = -27555.057984 eV Core-core repulsion = 23726.100948 eV Total energy + Delta-G solvation = -3828.957036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.70149 -39.87740 -38.40020 -37.69443 -36.65407 -35.59819 -33.51485 -32.51134 -32.19709 -31.55115 -29.15794 -28.51518 -25.93644 -24.88345 -24.70473 -23.82726 -22.32070 -22.07480 -20.47960 -19.12566 -18.31860 -17.93457 -17.36003 -17.22712 -16.70546 -16.26584 -16.06194 -15.90082 -15.47090 -15.32872 -15.19882 -15.08264 -15.00610 -14.62388 -14.41928 -13.95102 -13.50063 -13.35437 -13.16098 -13.09888 -13.01256 -12.77861 -12.71804 -12.50299 -12.43334 -12.23980 -12.18002 -12.03765 -11.93833 -11.86623 -11.69413 -10.93557 -10.77555 -10.60838 -10.03217 -9.85902 -8.64352 -8.43775 -7.87853 -5.42156 -0.02044 0.36504 1.26099 1.48991 1.50043 1.58630 1.61308 2.01107 2.38887 2.50173 2.67797 3.27931 3.45049 3.58654 3.74210 4.02114 4.09651 4.20188 4.21013 4.22273 4.27329 4.35055 4.41508 4.49875 4.55627 4.61133 4.73240 4.78496 4.79932 4.83639 4.96053 5.01658 5.02861 5.09461 5.20281 5.21831 5.25769 5.50884 5.58077 5.60594 5.64437 6.23137 6.36752 6.39555 6.53087 7.05703 7.11032 7.76759 8.31349 9.16416 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.010272 B = 0.003881 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2725.256119 B = 7213.720578 C = 8630.967068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.737 5.737 4 C 0.258 3.742 5 C -0.188 4.188 6 C -0.032 4.032 7 C -0.108 4.108 8 Cl -0.073 7.073 9 C -0.031 4.031 10 C -0.222 4.222 11 C 0.564 3.436 12 O -0.580 6.580 13 N -0.592 5.592 14 C 0.104 3.896 15 C 0.133 3.867 16 N -0.608 5.608 17 C -0.266 4.266 18 H 0.070 0.930 19 C -0.044 4.044 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.282 1.282 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.168 3.832 26 C 0.096 3.904 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.398 0.602 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.009 0.991 40 H 0.252 0.748 41 H -0.006 1.006 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 -14.709 11.589 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.011 4.011 3 N -0.363 5.363 4 C 0.148 3.852 5 C -0.210 4.210 6 C -0.051 4.051 7 C -0.137 4.137 8 Cl -0.045 7.045 9 C -0.051 4.051 10 C -0.230 4.230 11 C 0.354 3.646 12 O -0.462 6.462 13 N -0.323 5.323 14 C -0.020 4.020 15 C 0.007 3.993 16 N -0.331 5.331 17 C -0.396 4.396 18 H 0.088 0.912 19 C -0.239 4.239 20 N -0.581 5.581 21 Si 0.799 3.201 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.194 1.194 25 C 0.042 3.958 26 C -0.028 4.028 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.233 0.767 33 H 0.181 0.819 34 H 0.182 0.818 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.027 0.973 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.276 -14.926 11.839 19.331 hybrid contribution -0.082 1.358 -0.928 1.647 sum 3.193 -13.568 10.912 17.702 Atomic orbital electron populations 1.21968 0.93815 1.04205 1.02030 1.21630 0.95541 0.81443 1.02527 1.45121 1.03163 1.09360 1.78673 1.17971 0.85467 0.91785 0.89988 1.20831 0.91567 0.98847 1.09765 1.21220 0.95625 0.95100 0.93152 1.20480 0.84680 0.94902 1.13643 1.98350 1.12313 1.96339 1.97481 1.20889 0.90331 0.99265 0.94625 1.19141 0.93468 0.92278 1.18127 1.18430 0.83935 0.82093 0.80110 1.90693 1.36625 1.80807 1.38114 1.48056 1.36856 1.16096 1.31253 1.22101 0.94287 0.87063 0.98533 1.21362 0.90801 0.99471 0.87687 1.44223 1.38025 1.15959 1.34908 1.19549 1.41981 0.87154 0.90874 0.91188 1.25889 1.01690 0.98949 0.97394 1.70096 1.52068 1.22206 1.13745 0.85225 0.78146 0.79355 0.77423 1.20894 1.22254 1.19432 1.21078 0.93447 0.87501 0.93788 1.22635 0.90618 1.02315 0.87227 0.92665 0.92990 0.88356 0.90520 0.90447 0.76670 0.81864 0.81838 0.84941 0.90835 0.89176 0.90637 0.97332 0.93884 0.98816 0.90311 0.91179 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.03 71.98 0.72 -1.72 16 2 C 0.11 1.83 5.66 86.38 0.49 2.32 16 3 N -0.74 -18.44 5.53 -338.80 -1.87 -20.31 16 4 C 0.26 6.76 6.64 38.69 0.26 7.02 16 5 C -0.19 -3.69 9.30 22.37 0.21 -3.48 16 6 C -0.03 -0.60 9.80 22.31 0.22 -0.38 16 7 C -0.11 -2.51 6.31 22.29 0.14 -2.37 16 8 Cl -0.07 -1.60 28.94 -2.72 -0.08 -1.68 16 9 C -0.03 -0.85 7.34 22.54 0.17 -0.68 16 10 C -0.22 -6.72 4.79 -19.98 -0.10 -6.81 16 11 C 0.56 20.08 6.56 86.66 0.57 20.65 16 12 O -0.58 -22.87 15.13 -4.02 -0.06 -22.93 16 13 N -0.59 -21.65 2.95 -821.01 -2.42 -24.07 16 14 C 0.10 3.78 6.60 86.42 0.57 4.35 16 15 C 0.13 5.58 6.67 86.42 0.58 6.16 16 16 N -0.61 -29.96 2.96 -697.35 -2.06 -32.02 16 17 C -0.27 -14.14 9.59 84.03 0.81 -13.34 16 18 H 0.07 3.61 7.85 -2.92 -0.02 3.59 16 19 C -0.04 -2.35 5.07 84.86 0.43 -1.92 16 20 N -0.94 -53.60 10.95 21.65 0.24 -53.36 16 21 Si 0.97 43.54 29.57 68.60 2.03 45.57 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.17 7.95 5.50 86.56 0.48 8.43 16 26 C 0.10 3.58 5.57 86.56 0.48 4.06 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.06 7.72 -2.39 -0.02 1.04 16 31 H 0.08 1.05 8.13 -2.39 -0.02 1.04 16 32 H 0.40 11.84 6.50 -92.71 -0.60 11.24 16 33 H 0.16 2.18 6.72 -2.91 -0.02 2.16 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.13 3.57 7.46 -2.91 -0.02 3.55 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 3.15 6.99 -2.38 -0.02 3.13 16 38 H 0.08 2.98 7.93 -2.39 -0.02 2.96 16 39 H 0.01 0.38 8.14 -2.38 -0.02 0.37 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 41 H -0.01 -0.33 8.14 -2.38 -0.02 -0.34 16 42 H 0.08 4.15 5.95 -2.39 -0.01 4.14 16 43 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.09 3.18 5.11 -2.38 -0.01 3.17 16 Total: -1.00 -64.97 366.49 2.21 -62.76 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.42 Total: 23.78 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.01 Total: 22.26 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.12 Total: -129.77 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.06 Total: -22.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -64.97 2.21 -62.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192219700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.195 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds