Wall clock time and date at job start Tue Mar 31 2020 22:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47273 * 2 1 4 4 C 1.46903 * 110.99593 * 298.64733 * 3 2 1 5 5 C 1.50706 * 109.46705 * 170.90959 * 4 3 2 6 6 H 1.07999 * 120.00132 * 354.98667 * 5 4 3 7 7 C 1.37874 * 120.00007 * 174.98242 * 5 4 3 8 8 N 1.31517 * 119.99534 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00286 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46814 * 120.00121 * 9 7 5 12 12 H 1.48494 * 109.47373 * 240.00149 * 9 7 5 13 13 C 1.46898 * 111.00008 * 174.69530 * 3 2 1 14 14 C 1.50702 * 109.47036 * 293.95408 * 13 3 2 15 15 O 1.21291 * 120.00245 * 359.97438 * 14 13 3 16 16 N 1.34773 * 119.99829 * 180.28137 * 14 13 3 17 17 C 1.40112 * 119.99881 * 174.08832 * 16 14 13 18 18 C 1.38865 * 120.01695 * 334.66979 * 17 16 14 19 19 C 1.38066 * 119.98971 * 179.97438 * 18 17 16 20 20 C 1.38741 * 120.01189 * 359.97438 * 19 18 17 21 21 O 1.35969 * 119.98532 * 180.02562 * 20 19 18 22 22 C 1.42908 * 116.99992 * 0.02562 * 21 20 19 23 23 C 1.38707 * 120.03389 * 0.02562 * 20 19 18 24 24 C 1.38108 * 120.00868 * 359.74858 * 23 20 19 25 25 N 1.48017 * 120.00631 * 180.25514 * 24 23 20 26 26 O 1.21796 * 120.00022 * 5.15946 * 25 24 23 27 27 O 1.21803 * 120.00258 * 185.15518 * 25 24 23 28 28 H 1.08994 * 109.47196 * 65.11003 * 1 2 3 29 29 H 1.09001 * 109.46952 * 185.10715 * 1 2 3 30 30 H 1.08998 * 109.47108 * 305.10511 * 1 2 3 31 31 H 1.09002 * 109.46957 * 239.99497 * 2 1 3 32 32 H 1.09001 * 109.47256 * 120.00243 * 2 1 3 33 33 H 1.08997 * 109.47210 * 290.90980 * 4 3 2 34 34 H 1.08998 * 109.46844 * 50.91656 * 4 3 2 35 35 H 0.97010 * 119.99543 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47027 * 173.95316 * 13 3 2 37 37 H 1.09004 * 109.47129 * 53.95364 * 13 3 2 38 38 H 0.97003 * 120.00493 * 354.08072 * 16 14 13 39 39 H 1.08000 * 120.00477 * 0.02562 * 18 17 16 40 40 H 1.08001 * 119.99185 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.46416 * 59.99812 * 22 21 20 42 42 H 1.08998 * 109.47369 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.46889 * 300.00332 * 22 21 20 44 44 H 1.07997 * 119.99227 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5752 2.1004 -1.2036 5 6 1.9014 3.5653 -1.0663 6 1 2.3157 3.9421 -0.1428 7 6 1.6711 4.4245 -2.1197 8 7 1.1662 3.9657 -3.2441 9 14 2.0761 6.2402 -1.9498 10 1 2.6293 6.4994 -0.5963 11 1 3.0798 6.6215 -2.9758 12 1 0.8417 7.0428 -2.1426 13 6 3.4826 1.4261 0.1268 14 6 3.8842 0.9038 1.4822 15 8 3.0353 0.5341 2.2656 16 7 5.1863 0.8532 1.8261 17 6 5.5535 0.4857 3.1273 18 6 4.6684 0.6792 4.1797 19 6 5.0305 0.3163 5.4616 20 6 6.2783 -0.2421 5.6985 21 8 6.6342 -0.5998 6.9611 22 6 5.6739 -0.3725 7.9948 23 6 7.1630 -0.4358 4.6478 24 6 6.8001 -0.0775 3.3643 25 7 7.7420 -0.2894 2.2424 26 8 8.7982 -0.8647 2.4343 27 8 7.4609 0.1115 1.1271 28 1 -0.3633 0.4325 -0.9322 29 1 -0.3633 -1.0236 0.0915 30 1 -0.3633 0.5910 0.8407 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0860 1.6947 -2.0768 34 1 0.4988 1.9775 -1.3225 35 1 1.0038 4.5704 -3.9851 36 1 3.8281 2.4540 0.0165 37 1 3.9321 0.8064 -0.6492 38 1 5.8694 1.0712 1.1727 39 1 3.6965 1.1127 3.9953 40 1 4.3420 0.4664 6.2801 41 1 4.7654 -0.9338 7.7763 42 1 6.0833 -0.7018 8.9498 43 1 5.4405 0.6909 8.0463 44 1 8.1339 -0.8709 4.8329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266911402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:38 Heat of formation + Delta-G solvation = -23.165192 kcal Electronic energy + Delta-G solvation = -29334.252953 eV Core-core repulsion = 25063.650128 eV Total energy + Delta-G solvation = -4270.602825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.52918 -40.91905 -39.98541 -37.98200 -36.88701 -36.42829 -34.57378 -32.66673 -32.27124 -30.88154 -29.95059 -28.23205 -27.34966 -26.55733 -25.36305 -23.63368 -22.70448 -22.50174 -20.84205 -19.75897 -19.67741 -18.93403 -17.98319 -17.77970 -17.43811 -17.26492 -16.53865 -16.30567 -16.19864 -15.36660 -14.87628 -14.76500 -14.53659 -14.27006 -14.06798 -13.62902 -13.47578 -13.32441 -13.05418 -13.00929 -12.35955 -12.06202 -11.83983 -11.75898 -11.73992 -11.50309 -11.37466 -11.33807 -11.21044 -10.97403 -10.89829 -10.63441 -10.42453 -10.33315 -10.04223 -9.92828 -9.41803 -9.19605 -8.49643 -8.27410 -7.34724 -6.09713 -4.12075 -0.43045 0.68948 1.07859 1.10750 2.52847 2.64292 2.81544 3.08463 3.26578 3.34731 3.38263 4.03781 4.21941 4.29026 4.36658 4.51773 4.67104 4.67577 4.74663 4.90852 4.98984 5.08662 5.25582 5.27016 5.47976 5.57184 5.71715 5.74969 5.78633 5.97677 6.01982 6.10354 6.18191 6.26607 6.37418 6.64375 6.72175 6.79847 7.13639 7.24104 7.26904 7.44655 7.72171 7.93856 8.07772 8.11344 8.45399 8.95853 9.52968 11.00734 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.002877 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.386918 B = 9730.656322 C =10180.699851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.045 3.955 3 N -0.519 5.519 4 C 0.189 3.811 5 C -0.514 4.514 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.048 3.952 14 C 0.517 3.483 15 O -0.499 6.499 16 N -0.672 5.672 17 C 0.208 3.792 18 C -0.099 4.099 19 C -0.127 4.127 20 C 0.103 3.897 21 O -0.310 6.310 22 C 0.024 3.976 23 C -0.074 4.074 24 C -0.054 4.054 25 N 0.043 4.957 26 O -0.147 6.147 27 O -0.179 6.179 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.016 0.984 32 H 0.073 0.927 33 H -0.003 1.003 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.428 0.572 39 H 0.176 0.824 40 H 0.150 0.850 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.756 -9.166 19.087 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 N -0.245 5.245 4 C 0.064 3.936 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.084 4.084 14 C 0.307 3.693 15 O -0.372 6.372 16 N -0.326 5.326 17 C 0.107 3.893 18 C -0.119 4.119 19 C -0.147 4.147 20 C 0.056 3.944 21 O -0.224 6.224 22 C -0.071 4.071 23 C -0.094 4.094 24 C -0.141 4.141 25 N 0.558 4.442 26 O -0.367 6.367 27 O -0.384 6.384 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.015 0.985 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.078 0.922 38 H 0.274 0.726 39 H 0.193 0.807 40 H 0.167 0.833 41 H 0.078 0.922 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.529 -9.044 20.271 23.779 hybrid contribution 0.905 0.724 -1.253 1.707 sum 9.434 -8.320 19.018 22.801 Atomic orbital electron populations 1.21727 0.95326 1.00122 1.02744 1.22160 0.96262 0.90376 0.99491 1.61919 1.05877 1.12970 1.43726 1.19867 0.96663 0.93039 0.84005 1.21190 1.42413 0.92354 0.99297 0.91853 1.24984 0.95266 0.99010 0.95155 1.69966 1.44352 1.35290 1.03808 0.86469 0.78070 0.84963 0.78088 1.19687 1.21022 1.20974 1.21898 0.92843 1.03581 0.90041 1.21713 0.80324 0.76147 0.91111 1.90583 1.49702 1.44595 1.52336 1.44705 1.10954 1.66455 1.10479 1.17596 0.90881 0.93571 0.87213 1.21473 1.01391 0.99746 0.89320 1.21668 0.95536 0.98972 0.98501 1.18468 0.92728 0.98143 0.85091 1.86099 1.43134 1.79679 1.13466 1.23179 0.92751 1.01670 0.89488 1.19755 1.01564 1.00450 0.87618 1.20416 0.92019 1.14084 0.87606 1.43355 1.00963 0.98188 1.01668 1.94538 1.11549 1.40506 1.90084 1.94324 1.80760 1.53621 1.09681 0.92288 0.93636 0.92041 0.96593 0.90828 0.98529 0.94079 0.92862 0.85818 0.92223 0.72618 0.80706 0.83256 0.92178 0.87667 0.92192 0.82020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.59 37.16 0.36 -2.14 16 2 C 0.05 0.85 5.34 -3.83 -0.02 0.83 16 3 N -0.52 -10.92 4.28 -237.51 -1.02 -11.94 16 4 C 0.19 4.69 4.54 -4.97 -0.02 4.67 16 5 C -0.51 -13.73 8.25 -34.44 -0.28 -14.01 16 6 H 0.06 1.67 7.32 -52.49 -0.38 1.29 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.05 0.86 5.30 -4.98 -0.03 0.83 16 14 C 0.52 8.38 7.31 -10.99 -0.08 8.30 16 15 O -0.50 -8.86 11.54 5.55 0.06 -8.79 16 16 N -0.67 -9.30 4.97 -9.83 -0.05 -9.35 16 17 C 0.21 2.69 6.41 -83.62 -0.54 2.15 16 18 C -0.10 -1.15 8.71 -39.41 -0.34 -1.49 16 19 C -0.13 -1.13 9.03 -39.46 -0.36 -1.49 16 20 C 0.10 0.95 6.69 -39.22 -0.26 0.69 16 21 O -0.31 -2.52 10.50 -19.64 -0.21 -2.73 16 22 C 0.02 0.11 9.81 101.05 0.99 1.10 16 23 C -0.07 -0.76 9.49 -39.46 -0.37 -1.14 16 24 C -0.05 -0.66 6.86 -79.78 -0.55 -1.20 16 25 N 0.04 0.59 4.45 34.05 0.15 0.74 16 26 O -0.15 -2.02 18.46 -29.46 -0.54 -2.56 16 27 O -0.18 -2.55 15.81 -29.46 -0.47 -3.01 16 28 H 0.06 1.11 6.51 -51.93 -0.34 0.77 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 1.36 5.81 -51.93 -0.30 1.05 16 33 H 0.00 -0.08 8.13 -51.93 -0.42 -0.51 16 34 H 0.04 1.09 6.02 -51.93 -0.31 0.78 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.12 2.30 6.68 -51.93 -0.35 1.96 16 37 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 38 H 0.43 5.57 5.75 -40.82 -0.23 5.34 16 39 H 0.18 2.27 5.82 -52.49 -0.31 1.96 16 40 H 0.15 0.90 6.29 -52.49 -0.33 0.57 16 41 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 44 H 0.16 1.46 7.62 -52.49 -0.40 1.06 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -31.09 367.21 -7.84 -38.93 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.42 Total: 3.71 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.60 Total: -1.43 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.18 Total: -45.54 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.15 Total: -17.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.09 -7.84 -38.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266911402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.765 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds