Wall clock time and date at job start Tue Mar 31 2020 22:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47273 * 2 1 4 4 C 1.46903 * 110.99593 * 298.64733 * 3 2 1 5 5 C 1.50706 * 109.46705 * 170.90959 * 4 3 2 6 6 H 1.07999 * 120.00132 * 354.98667 * 5 4 3 7 7 C 1.37874 * 120.00007 * 174.98242 * 5 4 3 8 8 N 1.31517 * 119.99534 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00286 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46814 * 120.00121 * 9 7 5 12 12 H 1.48494 * 109.47373 * 240.00149 * 9 7 5 13 13 C 1.46898 * 111.00008 * 174.69530 * 3 2 1 14 14 C 1.50702 * 109.47036 * 293.95408 * 13 3 2 15 15 O 1.21291 * 120.00245 * 359.97438 * 14 13 3 16 16 N 1.34773 * 119.99829 * 180.28137 * 14 13 3 17 17 C 1.40112 * 119.99881 * 174.08832 * 16 14 13 18 18 C 1.38865 * 120.01695 * 334.66979 * 17 16 14 19 19 C 1.38066 * 119.98971 * 179.97438 * 18 17 16 20 20 C 1.38741 * 120.01189 * 359.97438 * 19 18 17 21 21 O 1.35969 * 119.98532 * 180.02562 * 20 19 18 22 22 C 1.42908 * 116.99992 * 0.02562 * 21 20 19 23 23 C 1.38707 * 120.03389 * 0.02562 * 20 19 18 24 24 C 1.38108 * 120.00868 * 359.74858 * 23 20 19 25 25 N 1.48017 * 120.00631 * 180.25514 * 24 23 20 26 26 O 1.21796 * 120.00022 * 5.15946 * 25 24 23 27 27 O 1.21803 * 120.00258 * 185.15518 * 25 24 23 28 28 H 1.08994 * 109.47196 * 65.11003 * 1 2 3 29 29 H 1.09001 * 109.46952 * 185.10715 * 1 2 3 30 30 H 1.08998 * 109.47108 * 305.10511 * 1 2 3 31 31 H 1.09002 * 109.46957 * 239.99497 * 2 1 3 32 32 H 1.09001 * 109.47256 * 120.00243 * 2 1 3 33 33 H 1.08997 * 109.47210 * 290.90980 * 4 3 2 34 34 H 1.08998 * 109.46844 * 50.91656 * 4 3 2 35 35 H 0.97010 * 119.99543 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47027 * 173.95316 * 13 3 2 37 37 H 1.09004 * 109.47129 * 53.95364 * 13 3 2 38 38 H 0.97003 * 120.00493 * 354.08072 * 16 14 13 39 39 H 1.08000 * 120.00477 * 0.02562 * 18 17 16 40 40 H 1.08001 * 119.99185 * 180.02562 * 19 18 17 41 41 H 1.09002 * 109.46416 * 59.99812 * 22 21 20 42 42 H 1.08998 * 109.47369 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.46889 * 300.00332 * 22 21 20 44 44 H 1.07997 * 119.99227 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5752 2.1004 -1.2036 5 6 1.9014 3.5653 -1.0663 6 1 2.3157 3.9421 -0.1428 7 6 1.6711 4.4245 -2.1197 8 7 1.1662 3.9657 -3.2441 9 14 2.0761 6.2402 -1.9498 10 1 2.6293 6.4994 -0.5963 11 1 3.0798 6.6215 -2.9758 12 1 0.8417 7.0428 -2.1426 13 6 3.4826 1.4261 0.1268 14 6 3.8842 0.9038 1.4822 15 8 3.0353 0.5341 2.2656 16 7 5.1863 0.8532 1.8261 17 6 5.5535 0.4857 3.1273 18 6 4.6684 0.6792 4.1797 19 6 5.0305 0.3163 5.4616 20 6 6.2783 -0.2421 5.6985 21 8 6.6342 -0.5998 6.9611 22 6 5.6739 -0.3725 7.9948 23 6 7.1630 -0.4358 4.6478 24 6 6.8001 -0.0775 3.3643 25 7 7.7420 -0.2894 2.2424 26 8 8.7982 -0.8647 2.4343 27 8 7.4609 0.1115 1.1271 28 1 -0.3633 0.4325 -0.9322 29 1 -0.3633 -1.0236 0.0915 30 1 -0.3633 0.5910 0.8407 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0860 1.6947 -2.0768 34 1 0.4988 1.9775 -1.3225 35 1 1.0038 4.5704 -3.9851 36 1 3.8281 2.4540 0.0165 37 1 3.9321 0.8064 -0.6492 38 1 5.8694 1.0712 1.1727 39 1 3.6965 1.1127 3.9953 40 1 4.3420 0.4664 6.2801 41 1 4.7654 -0.9338 7.7763 42 1 6.0833 -0.7018 8.9498 43 1 5.4405 0.6909 8.0463 44 1 8.1339 -0.8709 4.8329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266911402.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:36 Heat of formation + Delta-G solvation = -43.019494 kcal Electronic energy + Delta-G solvation = -29335.113900 eV Core-core repulsion = 25063.650128 eV Total energy + Delta-G solvation = -4271.463772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -43.54675 -41.92185 -40.94438 -39.01048 -37.97374 -37.85959 -35.66706 -34.70955 -33.14252 -32.20362 -31.06379 -29.72117 -28.28999 -27.46193 -26.87165 -24.79186 -24.34333 -23.42984 -22.14745 -21.26191 -20.56959 -19.97046 -19.00816 -18.80976 -18.54986 -18.45187 -18.15870 -17.20390 -16.82391 -16.72423 -16.46076 -16.26309 -15.72429 -15.46615 -15.24652 -14.95739 -14.56158 -14.28837 -14.25920 -14.16083 -13.62578 -13.55641 -13.28505 -12.90431 -12.81961 -12.70889 -12.64118 -12.55346 -12.45415 -12.44295 -12.34473 -12.23139 -12.05695 -11.71914 -11.35836 -11.27914 -10.89684 -10.67975 -10.54083 -9.18170 -9.04841 -8.19007 -6.28703 -1.39842 -0.17720 0.12108 0.14948 1.33272 1.42575 1.44036 1.55924 1.59195 2.12886 2.18630 2.41472 3.13711 3.14533 3.22737 3.41758 3.51134 3.71988 3.75981 4.07108 4.23651 4.25738 4.34195 4.41636 4.43836 4.46630 4.50983 4.61402 4.69538 4.77836 4.80909 4.89243 4.91939 5.06340 5.08898 5.26394 5.28548 5.30122 5.34039 5.66454 6.00002 6.06519 6.10625 6.27036 6.37105 6.56166 6.85819 6.87098 7.41121 8.91939 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012682 B = 0.002877 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.386918 B = 9730.656322 C =10180.699851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.046 3.954 3 N -0.528 5.528 4 C 0.205 3.795 5 C -0.524 4.524 6 H 0.064 0.936 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.281 1.281 13 C 0.045 3.955 14 C 0.528 3.472 15 O -0.516 6.516 16 N -0.665 5.665 17 C 0.185 3.815 18 C -0.106 4.106 19 C -0.110 4.110 20 C 0.116 3.884 21 O -0.318 6.318 22 C 0.010 3.990 23 C -0.075 4.075 24 C -0.057 4.057 25 N 0.043 4.957 26 O -0.146 6.146 27 O -0.204 6.204 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.082 0.918 33 H -0.030 1.030 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.430 0.570 39 H 0.163 0.837 40 H 0.183 0.817 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 -9.240 21.986 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 N -0.254 5.254 4 C 0.079 3.921 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.207 1.207 13 C -0.086 4.086 14 C 0.317 3.683 15 O -0.391 6.391 16 N -0.319 5.319 17 C 0.085 3.915 18 C -0.127 4.127 19 C -0.129 4.129 20 C 0.069 3.931 21 O -0.231 6.231 22 C -0.083 4.083 23 C -0.095 4.095 24 C -0.144 4.144 25 N 0.555 4.445 26 O -0.367 6.367 27 O -0.404 6.404 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.101 0.899 33 H -0.012 1.012 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.276 0.724 39 H 0.180 0.820 40 H 0.201 0.799 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.091 0.909 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 9.274 -9.120 23.180 26.580 hybrid contribution 0.741 0.638 -1.930 2.164 sum 10.015 -8.482 21.250 24.976 Atomic orbital electron populations 1.21680 0.94487 1.01812 1.01348 1.22220 0.97008 0.89112 0.99836 1.61822 1.07844 1.14234 1.41450 1.19502 0.95083 0.92878 0.84611 1.21468 1.42069 0.93363 0.99302 0.91821 1.25837 0.95055 1.03577 0.94765 1.70087 1.45496 1.36948 1.04637 0.85401 0.77846 0.79330 0.78445 1.18711 1.20450 1.20735 1.21859 0.91187 1.03564 0.91961 1.21099 0.81065 0.76134 0.89990 1.90573 1.50374 1.45714 1.52459 1.44421 1.09900 1.66263 1.11348 1.17741 0.91715 0.95280 0.86779 1.21413 1.00728 1.00359 0.90169 1.21950 0.95800 0.96944 0.98190 1.18488 0.92245 0.96775 0.85607 1.86123 1.44508 1.79243 1.13242 1.23555 0.92760 1.02939 0.89081 1.19967 1.02401 1.00007 0.87095 1.20461 0.91462 1.14803 0.87703 1.43568 1.01099 0.97901 1.01934 1.94514 1.11886 1.40238 1.90097 1.94321 1.81060 1.54563 1.10430 0.94181 0.90491 0.92731 0.96510 0.89937 1.01187 0.96187 0.92700 0.86718 0.91381 0.72367 0.81975 0.79950 0.91059 0.85657 0.90854 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.59 71.98 0.69 -4.09 16 2 C 0.05 1.73 5.34 86.30 0.46 2.20 16 3 N -0.53 -22.71 4.28 -905.35 -3.87 -26.58 16 4 C 0.20 10.55 4.54 85.56 0.39 10.94 16 5 C -0.52 -28.52 8.25 25.60 0.21 -28.31 16 6 H 0.06 3.40 7.32 -2.91 -0.02 3.37 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -54.63 13.29 21.45 0.28 -54.35 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.05 1.68 5.30 85.56 0.45 2.13 16 14 C 0.53 17.22 7.31 87.66 0.64 17.86 16 15 O -0.52 -18.22 11.54 -3.06 -0.04 -18.25 16 16 N -0.66 -18.52 4.97 -303.39 -1.51 -20.03 16 17 C 0.18 4.64 6.41 38.11 0.24 4.88 16 18 C -0.11 -2.31 8.71 22.38 0.19 -2.12 16 19 C -0.11 -1.63 9.03 22.35 0.20 -1.43 16 20 C 0.12 1.81 6.69 22.50 0.15 1.96 16 21 O -0.32 -4.05 10.50 -93.20 -0.98 -5.03 16 22 C 0.01 0.05 9.81 113.37 1.11 1.16 16 23 C -0.07 -1.39 9.49 22.35 0.21 -1.18 16 24 C -0.06 -1.34 6.86 36.49 0.25 -1.09 16 25 N 0.04 1.14 4.45 -46.20 -0.21 0.94 16 26 O -0.15 -3.89 18.46 18.89 0.35 -3.54 16 27 O -0.20 -5.88 15.81 18.88 0.30 -5.58 16 28 H 0.04 1.54 6.51 -2.39 -0.02 1.53 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 3.00 5.81 -2.39 -0.01 2.99 16 33 H -0.03 -1.65 8.13 -2.39 -0.02 -1.67 16 34 H 0.02 1.11 6.02 -2.39 -0.01 1.10 16 35 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 36 H 0.11 4.41 6.68 -2.39 -0.02 4.39 16 37 H 0.07 2.38 8.12 -2.38 -0.02 2.36 16 38 H 0.43 11.44 5.75 -92.71 -0.53 10.91 16 39 H 0.16 4.06 5.82 -2.91 -0.02 4.05 16 40 H 0.18 1.43 6.29 -2.91 -0.02 1.41 16 41 H 0.07 0.22 7.66 -2.39 -0.02 0.20 16 42 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.07 0.19 7.66 -2.39 -0.02 0.18 16 44 H 0.17 2.77 7.62 -2.91 -0.02 2.74 16 Total: -1.00 -67.62 367.21 2.56 -65.06 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.53 Total: 18.52 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.67 Total: 3.72 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -5.30 Total: -100.02 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -0.37 Total: -32.41 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.62 2.56 -65.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266911402.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.040 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds