Wall clock time and date at job start Tue Mar 31 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47267 * 2 1 4 4 C 1.46901 * 110.99931 * 301.03593 * 3 2 1 5 5 C 1.50696 * 109.46867 * 288.94984 * 4 3 2 6 6 H 1.08003 * 120.00603 * 4.99403 * 5 4 3 7 7 C 1.37879 * 120.00102 * 184.98471 * 5 4 3 8 8 N 1.31520 * 119.99625 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00334 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46739 * 60.00564 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47062 * 300.00862 * 9 7 5 13 13 C 1.46904 * 110.99898 * 64.98856 * 3 2 1 14 14 C 1.50698 * 109.46969 * 66.04391 * 13 3 2 15 15 O 1.21286 * 120.00351 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99775 * 179.97438 * 14 13 3 17 17 C 1.40122 * 120.00163 * 185.53932 * 16 14 13 18 18 C 1.38717 * 120.08930 * 24.80068 * 17 16 14 19 19 C 1.38199 * 119.98705 * 179.97438 * 18 17 16 20 20 C 1.38279 * 120.16107 * 0.02562 * 19 18 17 21 21 N 1.48018 * 119.90888 * 180.02562 * 20 19 18 22 22 O 1.21801 * 120.00062 * 359.97438 * 21 20 19 23 23 O 1.21802 * 120.00047 * 180.02562 * 21 20 19 24 24 C 1.38244 * 120.17947 * 359.72826 * 20 19 18 25 25 C 1.38548 * 120.01519 * 0.54677 * 24 20 19 26 26 O 1.35975 * 120.08641 * 179.72806 * 25 24 20 27 27 C 1.42901 * 116.99501 * 359.72239 * 26 25 24 28 28 H 1.09001 * 109.47513 * 65.03769 * 1 2 3 29 29 H 1.08997 * 109.47348 * 185.04119 * 1 2 3 30 30 H 1.09005 * 109.46875 * 305.03514 * 1 2 3 31 31 H 1.09006 * 109.47272 * 240.00302 * 2 1 3 32 32 H 1.08996 * 109.47607 * 120.00582 * 2 1 3 33 33 H 1.08995 * 109.47490 * 48.95421 * 4 3 2 34 34 H 1.09001 * 109.46802 * 168.95333 * 4 3 2 35 35 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47027 * 306.04427 * 13 3 2 37 37 H 1.08996 * 109.47346 * 186.05115 * 13 3 2 38 38 H 0.97002 * 120.00369 * 5.53990 * 16 14 13 39 39 H 1.07998 * 120.01009 * 0.02562 * 18 17 16 40 40 H 1.07994 * 119.92098 * 180.02562 * 19 18 17 41 41 H 1.08004 * 119.99125 * 180.27651 * 24 20 19 42 42 H 1.09000 * 109.46973 * 179.97438 * 27 26 25 43 43 H 1.09000 * 109.47038 * 60.00749 * 27 26 25 44 44 H 1.08997 * 109.47213 * 300.00208 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5285 2.1170 -1.1751 5 6 2.2222 1.6058 -2.4114 6 1 2.8941 0.7629 -2.3442 7 6 1.9990 2.2140 -3.6285 8 7 1.1810 3.2406 -3.7104 9 14 2.8583 1.5798 -5.1612 10 1 2.4763 0.1636 -5.3925 11 1 2.4528 2.3998 -6.3309 12 1 4.3289 1.6723 -4.9781 13 6 1.6484 2.0746 1.2429 14 6 2.3689 1.4395 2.4041 15 8 3.1183 0.5048 2.2151 16 7 2.1814 1.9109 3.6528 17 6 2.9369 1.3988 4.7159 18 6 4.1773 0.8264 4.4752 19 6 4.9210 0.3224 5.5254 20 6 4.4315 0.3865 6.8171 21 7 5.2329 -0.1545 7.9378 22 8 6.3218 -0.6557 7.7215 23 8 4.8032 -0.0993 9.0761 24 6 3.1984 0.9601 7.0653 25 6 2.4442 1.4625 6.0173 26 8 1.2287 2.0220 6.2591 27 6 0.7878 2.0533 7.6181 28 1 -0.3634 0.4337 -0.9316 29 1 -0.3634 -1.0236 0.0903 30 1 -0.3633 0.5900 0.8415 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4534 1.9671 -1.2734 34 1 1.7376 3.1800 -1.0545 35 1 1.0243 3.6687 -4.5666 36 1 0.5721 1.9945 1.3953 37 1 1.9281 3.1257 1.1726 38 1 1.5233 2.6048 3.8155 39 1 4.5623 0.7753 3.4675 40 1 5.8867 -0.1226 5.3368 41 1 2.8210 1.0126 8.0759 42 1 -0.1935 2.5247 7.6709 43 1 1.4973 2.6241 8.2172 44 1 0.7236 1.0355 8.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266951718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:48 Heat of formation + Delta-G solvation = -26.504056 kcal Electronic energy + Delta-G solvation = -28909.783380 eV Core-core repulsion = 24639.035771 eV Total energy + Delta-G solvation = -4270.747609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -42.39220 -41.27962 -39.84137 -38.01775 -36.85311 -36.72696 -35.14221 -32.66804 -31.49113 -30.89627 -29.81337 -28.37258 -28.18044 -26.37935 -25.10620 -23.38953 -23.25710 -22.63058 -20.92172 -19.99569 -19.65292 -18.87066 -18.16808 -17.71573 -17.32471 -17.22495 -16.53260 -16.28004 -16.08503 -15.83250 -14.98330 -14.88207 -14.75468 -14.26960 -14.06710 -13.84171 -13.63725 -13.42360 -12.92437 -12.53336 -12.37508 -12.28305 -11.91825 -11.84228 -11.76936 -11.72390 -11.40595 -11.32354 -11.25692 -11.11496 -11.02980 -10.83556 -10.65315 -10.18827 -10.05319 -9.62952 -9.39217 -9.22706 -8.52649 -8.48063 -7.35792 -6.08919 -4.09372 -0.43403 0.62109 1.07256 1.19413 2.41018 2.45282 2.64131 3.03693 3.31261 3.35068 3.38887 4.01480 4.18129 4.28960 4.35673 4.44956 4.54660 4.63176 4.82744 4.86160 4.98828 5.01055 5.12557 5.27662 5.41977 5.42196 5.47500 5.52619 5.75537 5.78699 5.90936 6.03145 6.08244 6.18366 6.33977 6.56780 6.60670 6.84658 6.99570 7.14261 7.25880 7.46420 7.71012 7.89665 8.00771 8.08466 8.42095 8.97439 9.54707 11.01830 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002337 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.696023 B =11977.367395 C =12876.460563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.054 3.946 3 N -0.516 5.516 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.901 5.901 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.034 3.966 14 C 0.517 3.483 15 O -0.488 6.488 16 N -0.669 5.669 17 C 0.196 3.804 18 C -0.105 4.105 19 C -0.056 4.056 20 C -0.040 4.040 21 N 0.035 4.965 22 O -0.160 6.160 23 O -0.172 6.172 24 C -0.128 4.128 25 C 0.092 3.908 26 O -0.308 6.308 27 C 0.024 3.976 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.001 0.999 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.420 0.580 39 H 0.180 0.820 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 -0.798 22.587 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.075 4.075 3 N -0.240 5.240 4 C 0.065 3.935 5 C -0.542 4.542 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.727 3.273 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.097 4.097 14 C 0.306 3.694 15 O -0.360 6.360 16 N -0.314 5.314 17 C 0.097 3.903 18 C -0.126 4.126 19 C -0.076 4.076 20 C -0.124 4.124 21 N 0.552 4.448 22 O -0.376 6.376 23 O -0.386 6.386 24 C -0.149 4.149 25 C 0.044 3.956 26 O -0.221 6.221 27 C -0.071 4.071 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.257 0.743 39 H 0.197 0.803 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.053 -0.971 21.488 21.536 hybrid contribution -0.690 0.002 -0.057 0.692 sum -1.743 -0.969 21.431 21.523 Atomic orbital electron populations 1.22427 0.99657 1.00843 1.01985 1.22148 0.91552 0.90942 1.02815 1.62178 1.59500 1.02131 1.00191 1.19868 0.94211 0.93607 0.85831 1.21069 1.26353 1.15558 0.91258 0.91846 1.24962 0.95449 0.95020 0.99111 1.69936 1.36423 1.22051 1.25614 0.86545 0.80069 0.78736 0.81998 1.20255 1.21393 1.20130 1.22011 0.97743 0.99808 0.90184 1.21506 0.82171 0.82933 0.82834 1.90630 1.35447 1.26267 1.83652 1.43870 1.40342 1.40985 1.06179 1.17580 0.91130 0.96499 0.85052 1.21466 0.91145 0.98431 1.01583 1.20956 1.01223 0.96722 0.88730 1.20712 0.94887 1.09826 0.86988 1.43549 1.00771 0.98339 1.02101 1.94547 1.07483 1.44875 1.90725 1.94512 1.74689 1.62022 1.07328 1.20702 0.93302 1.00249 1.00614 1.18313 0.86784 0.98835 0.91684 1.86082 1.30316 1.75712 1.30009 1.23208 1.01193 1.02505 0.80206 0.91164 0.93265 0.94068 0.90029 0.91253 0.98094 0.95048 0.92851 0.91912 0.87662 0.74268 0.80310 0.82371 0.82355 0.87345 0.92096 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 9.22 37.15 0.34 -2.85 16 2 C 0.05 1.01 5.55 -3.83 -0.02 0.99 16 3 N -0.52 -10.31 4.40 -237.52 -1.05 -11.35 16 4 C 0.19 4.53 4.54 -4.98 -0.02 4.51 16 5 C -0.50 -13.58 8.67 -34.44 -0.30 -13.88 16 6 H 0.06 1.73 7.27 -52.48 -0.38 1.35 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.03 0.51 5.28 -4.97 -0.03 0.49 16 14 C 0.52 7.12 7.32 -10.99 -0.08 7.04 16 15 O -0.49 -8.12 11.51 5.55 0.06 -8.05 16 16 N -0.67 -6.96 5.29 -9.75 -0.05 -7.01 16 17 C 0.20 2.09 6.45 -83.49 -0.54 1.55 16 18 C -0.11 -1.17 8.72 -39.42 -0.34 -1.51 16 19 C -0.06 -0.58 9.55 -39.58 -0.38 -0.96 16 20 C -0.04 -0.43 6.85 -79.93 -0.55 -0.98 16 21 N 0.04 0.44 4.45 33.97 0.15 0.59 16 22 O -0.16 -2.14 18.44 -29.46 -0.54 -2.68 16 23 O -0.17 -2.20 18.44 -29.46 -0.54 -2.75 16 24 C -0.13 -1.17 8.54 -39.46 -0.34 -1.51 16 25 C 0.09 0.85 6.70 -39.07 -0.26 0.59 16 26 O -0.31 -2.39 9.91 -19.66 -0.19 -2.59 16 27 C 0.02 0.10 9.81 101.05 0.99 1.10 16 28 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.62 6.18 -51.93 -0.32 0.30 16 31 H 0.08 1.69 7.14 -51.93 -0.37 1.32 16 32 H 0.07 1.26 5.81 -51.93 -0.30 0.96 16 33 H 0.00 0.04 5.86 -51.93 -0.30 -0.27 16 34 H 0.03 0.80 7.83 -51.93 -0.41 0.39 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.06 0.85 6.08 -51.93 -0.32 0.54 16 37 H 0.11 1.46 7.87 -51.93 -0.41 1.05 16 38 H 0.42 3.30 8.35 -40.82 -0.34 2.96 16 39 H 0.18 2.23 5.79 -52.49 -0.30 1.93 16 40 H 0.16 1.44 7.60 -52.49 -0.40 1.04 16 41 H 0.16 1.16 5.84 -52.48 -0.31 0.86 16 42 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 44 H 0.06 0.24 7.68 -51.93 -0.40 -0.16 16 LS Contribution 367.23 15.07 5.53 5.53 Total: -1.00 -31.66 367.23 -7.80 -39.47 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.27 Total: 1.57 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -1.62 Total: -4.01 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -0.21 Total: -42.69 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -1.22 Total: -16.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.66 -7.80 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266951718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.961 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds