Wall clock time and date at job start Tue Mar 31 2020 22:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47267 * 2 1 4 4 C 1.46901 * 110.99931 * 301.03593 * 3 2 1 5 5 C 1.50696 * 109.46867 * 288.94984 * 4 3 2 6 6 H 1.08003 * 120.00603 * 4.99403 * 5 4 3 7 7 C 1.37879 * 120.00102 * 184.98471 * 5 4 3 8 8 N 1.31520 * 119.99625 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00334 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46739 * 60.00564 * 9 7 5 11 11 H 1.48496 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48491 * 109.47062 * 300.00862 * 9 7 5 13 13 C 1.46904 * 110.99898 * 64.98856 * 3 2 1 14 14 C 1.50698 * 109.46969 * 66.04391 * 13 3 2 15 15 O 1.21286 * 120.00351 * 0.02562 * 14 13 3 16 16 N 1.34777 * 119.99775 * 179.97438 * 14 13 3 17 17 C 1.40122 * 120.00163 * 185.53932 * 16 14 13 18 18 C 1.38717 * 120.08930 * 24.80068 * 17 16 14 19 19 C 1.38199 * 119.98705 * 179.97438 * 18 17 16 20 20 C 1.38279 * 120.16107 * 0.02562 * 19 18 17 21 21 N 1.48018 * 119.90888 * 180.02562 * 20 19 18 22 22 O 1.21801 * 120.00062 * 359.97438 * 21 20 19 23 23 O 1.21802 * 120.00047 * 180.02562 * 21 20 19 24 24 C 1.38244 * 120.17947 * 359.72826 * 20 19 18 25 25 C 1.38548 * 120.01519 * 0.54677 * 24 20 19 26 26 O 1.35975 * 120.08641 * 179.72806 * 25 24 20 27 27 C 1.42901 * 116.99501 * 359.72239 * 26 25 24 28 28 H 1.09001 * 109.47513 * 65.03769 * 1 2 3 29 29 H 1.08997 * 109.47348 * 185.04119 * 1 2 3 30 30 H 1.09005 * 109.46875 * 305.03514 * 1 2 3 31 31 H 1.09006 * 109.47272 * 240.00302 * 2 1 3 32 32 H 1.08996 * 109.47607 * 120.00582 * 2 1 3 33 33 H 1.08995 * 109.47490 * 48.95421 * 4 3 2 34 34 H 1.09001 * 109.46802 * 168.95333 * 4 3 2 35 35 H 0.97005 * 119.99700 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47027 * 306.04427 * 13 3 2 37 37 H 1.08996 * 109.47346 * 186.05115 * 13 3 2 38 38 H 0.97002 * 120.00369 * 5.53990 * 16 14 13 39 39 H 1.07998 * 120.01009 * 0.02562 * 18 17 16 40 40 H 1.07994 * 119.92098 * 180.02562 * 19 18 17 41 41 H 1.08004 * 119.99125 * 180.27651 * 24 20 19 42 42 H 1.09000 * 109.46973 * 179.97438 * 27 26 25 43 43 H 1.09000 * 109.47038 * 60.00749 * 27 26 25 44 44 H 1.08997 * 109.47213 * 300.00208 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5285 2.1170 -1.1751 5 6 2.2222 1.6058 -2.4114 6 1 2.8941 0.7629 -2.3442 7 6 1.9990 2.2140 -3.6285 8 7 1.1810 3.2406 -3.7104 9 14 2.8583 1.5798 -5.1612 10 1 2.4763 0.1636 -5.3925 11 1 2.4528 2.3998 -6.3309 12 1 4.3289 1.6723 -4.9781 13 6 1.6484 2.0746 1.2429 14 6 2.3689 1.4395 2.4041 15 8 3.1183 0.5048 2.2151 16 7 2.1814 1.9109 3.6528 17 6 2.9369 1.3988 4.7159 18 6 4.1773 0.8264 4.4752 19 6 4.9210 0.3224 5.5254 20 6 4.4315 0.3865 6.8171 21 7 5.2329 -0.1545 7.9378 22 8 6.3218 -0.6557 7.7215 23 8 4.8032 -0.0993 9.0761 24 6 3.1984 0.9601 7.0653 25 6 2.4442 1.4625 6.0173 26 8 1.2287 2.0220 6.2591 27 6 0.7878 2.0533 7.6181 28 1 -0.3634 0.4337 -0.9316 29 1 -0.3634 -1.0236 0.0903 30 1 -0.3633 0.5900 0.8415 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.4534 1.9671 -1.2734 34 1 1.7376 3.1800 -1.0545 35 1 1.0243 3.6687 -4.5666 36 1 0.5721 1.9945 1.3953 37 1 1.9281 3.1257 1.1726 38 1 1.5233 2.6048 3.8155 39 1 4.5623 0.7753 3.4675 40 1 5.8867 -0.1226 5.3368 41 1 2.8210 1.0126 8.0759 42 1 -0.1935 2.5247 7.6709 43 1 1.4973 2.6241 8.2172 44 1 0.7236 1.0355 8.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266951718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:44 Heat of formation + Delta-G solvation = -47.296543 kcal Electronic energy + Delta-G solvation = -28910.685010 eV Core-core repulsion = 24639.035771 eV Total energy + Delta-G solvation = -4271.649239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.32041 -42.17030 -40.78993 -38.88411 -38.19873 -37.69477 -36.15219 -34.69983 -32.44711 -31.67735 -31.17204 -29.98733 -28.69888 -27.58409 -26.41599 -25.00188 -24.21997 -23.52740 -22.11686 -21.07654 -20.76295 -19.82895 -19.10811 -18.65612 -18.46103 -18.11715 -17.97674 -17.31716 -17.00630 -16.83184 -16.53369 -16.30487 -15.76776 -15.54615 -15.16658 -14.83591 -14.55147 -14.43357 -14.27630 -14.08745 -13.47161 -13.27150 -13.11744 -12.96841 -12.80068 -12.73184 -12.66032 -12.58404 -12.49530 -12.38597 -12.32465 -12.31565 -12.04181 -11.91972 -11.59253 -11.38516 -10.78463 -10.56455 -10.16564 -9.33685 -8.93342 -8.17774 -6.24897 -1.34827 -0.14670 0.14758 0.29922 1.36889 1.42277 1.43990 1.51478 1.60469 1.94275 2.20051 2.42445 3.14339 3.25193 3.32400 3.46471 3.51090 3.52174 3.94733 4.05905 4.19709 4.24699 4.34723 4.35755 4.36191 4.40278 4.51793 4.59306 4.63766 4.66288 4.77024 4.88593 4.94542 5.01843 5.14750 5.24434 5.32828 5.35397 5.48870 5.68894 5.97076 6.04478 6.16540 6.35389 6.47079 6.60892 6.88178 6.94689 7.43362 8.92002 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019270 B = 0.002337 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.696023 B =11977.367395 C =12876.460563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.534 5.534 4 C 0.205 3.795 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.273 1.273 13 C 0.033 3.967 14 C 0.526 3.474 15 O -0.521 6.521 16 N -0.651 5.651 17 C 0.185 3.815 18 C -0.111 4.111 19 C -0.057 4.057 20 C -0.046 4.046 21 N 0.036 4.964 22 O -0.188 6.188 23 O -0.168 6.168 24 C -0.121 4.121 25 C 0.107 3.893 26 O -0.312 6.312 27 C 0.011 3.989 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.079 0.921 33 H -0.011 1.011 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.434 0.566 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.180 0.820 42 H 0.130 0.870 43 H 0.072 0.928 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.466 -0.639 24.227 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.070 4.070 3 N -0.258 5.258 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.198 1.198 13 C -0.098 4.098 14 C 0.314 3.686 15 O -0.395 6.395 16 N -0.297 5.297 17 C 0.086 3.914 18 C -0.132 4.132 19 C -0.077 4.077 20 C -0.131 4.131 21 N 0.550 4.450 22 O -0.398 6.398 23 O -0.384 6.384 24 C -0.141 4.141 25 C 0.058 3.942 26 O -0.225 6.225 27 C -0.082 4.082 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.007 0.993 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.274 0.726 39 H 0.182 0.818 40 H 0.182 0.818 41 H 0.198 0.802 42 H 0.148 0.852 43 H 0.091 0.909 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.036 -0.814 23.159 23.263 hybrid contribution -0.462 -0.004 -0.413 0.619 sum -2.498 -0.818 22.747 22.898 Atomic orbital electron populations 1.22304 0.97917 1.02326 1.01319 1.22057 0.92939 0.90157 1.01843 1.61947 1.60243 1.02621 1.00961 1.19488 0.93102 0.92666 0.86774 1.21393 1.26239 1.15275 0.92906 0.92863 1.25725 0.96109 0.95243 1.01984 1.70032 1.37614 1.23073 1.26336 0.85595 0.78984 0.78393 0.78605 1.19647 1.20759 1.19832 1.22056 0.99241 0.99985 0.88564 1.21099 0.81544 0.82440 0.83468 1.90636 1.36817 1.27772 1.84268 1.43515 1.40251 1.40851 1.05060 1.17645 0.91107 0.96995 0.85606 1.21301 0.91757 0.99126 1.01016 1.20980 1.01508 0.96642 0.88562 1.20815 0.95382 1.10410 0.86447 1.43753 1.00742 0.98099 1.02384 1.94551 1.08263 1.46163 1.90865 1.94488 1.74493 1.61609 1.07858 1.20909 0.92388 0.99174 1.01668 1.18187 0.87253 0.97930 0.90818 1.86101 1.29157 1.75067 1.32189 1.23557 1.02522 1.03511 0.78635 0.93934 0.91206 0.91984 0.92847 0.90281 0.99309 0.96940 0.92741 0.89753 0.86581 0.72596 0.81811 0.81797 0.80242 0.85220 0.90929 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.86 9.22 71.98 0.66 -5.20 16 2 C 0.06 2.18 5.55 86.30 0.48 2.66 16 3 N -0.53 -21.42 4.40 -905.38 -3.98 -25.40 16 4 C 0.21 10.02 4.54 85.56 0.39 10.41 16 5 C -0.52 -28.60 8.67 25.60 0.22 -28.37 16 6 H 0.05 2.97 7.27 -2.91 -0.02 2.95 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 9 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.03 0.94 5.28 85.56 0.45 1.39 16 14 C 0.53 13.85 7.32 87.66 0.64 14.49 16 15 O -0.52 -17.12 11.51 -3.05 -0.04 -17.15 16 16 N -0.65 -12.28 5.29 -303.14 -1.60 -13.89 16 17 C 0.19 3.62 6.45 38.19 0.25 3.86 16 18 C -0.11 -2.40 8.72 22.38 0.20 -2.20 16 19 C -0.06 -1.15 9.55 22.27 0.21 -0.94 16 20 C -0.05 -0.93 6.85 36.39 0.25 -0.68 16 21 N 0.04 0.86 4.45 -46.43 -0.21 0.65 16 22 O -0.19 -4.99 18.44 18.89 0.35 -4.64 16 23 O -0.17 -4.04 18.44 18.88 0.35 -3.69 16 24 C -0.12 -1.91 8.54 22.35 0.19 -1.72 16 25 C 0.11 1.70 6.70 22.60 0.15 1.85 16 26 O -0.31 -3.81 9.91 -93.27 -0.92 -4.74 16 27 C 0.01 0.06 9.81 113.37 1.11 1.17 16 28 H 0.04 1.62 6.43 -2.39 -0.02 1.61 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.73 6.18 -2.38 -0.01 1.72 16 31 H 0.05 2.27 7.14 -2.38 -0.02 2.25 16 32 H 0.08 2.84 5.81 -2.39 -0.01 2.82 16 33 H -0.01 -0.54 5.86 -2.39 -0.01 -0.55 16 34 H 0.01 0.65 7.83 -2.39 -0.02 0.63 16 35 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 36 H 0.08 2.10 6.08 -2.39 -0.01 2.08 16 37 H 0.12 3.10 7.87 -2.39 -0.02 3.08 16 38 H 0.43 5.68 8.35 -92.71 -0.77 4.90 16 39 H 0.16 4.14 5.79 -2.91 -0.02 4.13 16 40 H 0.16 3.01 7.60 -2.91 -0.02 2.99 16 41 H 0.18 2.03 5.84 -2.91 -0.02 2.02 16 42 H 0.13 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 44 H 0.07 0.30 7.68 -2.39 -0.02 0.28 16 Total: -1.00 -68.81 367.23 2.22 -66.59 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.30 Total: 12.15 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 5.67 Total: -2.39 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -5.51 Total: -91.95 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.26 Total: -30.23 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.81 2.22 -66.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266951718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds