Wall clock time and date at job start Tue Mar 31 2020 22:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47040 * 2 1 4 4 C 1.46504 * 119.99798 * 264.98927 * 3 2 1 5 5 C 1.50698 * 109.47366 * 263.14599 * 4 3 2 6 6 H 1.08003 * 119.99879 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00133 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47183 * 90.00020 * 9 7 5 11 11 H 1.48498 * 109.47015 * 210.00033 * 9 7 5 12 12 H 1.48496 * 109.47051 * 329.99617 * 9 7 5 13 13 C 1.34781 * 120.00197 * 84.99164 * 3 2 1 14 14 O 1.21357 * 119.99945 * 4.03512 * 13 3 2 15 15 C 1.49321 * 119.99660 * 184.03046 * 13 3 2 16 16 O 1.21398 * 120.00435 * 354.69797 * 15 13 3 17 17 N 1.34778 * 119.99628 * 174.70285 * 15 13 3 18 18 C 1.40419 * 119.99973 * 180.02562 * 17 15 13 19 19 C 1.40228 * 126.13247 * 359.96780 * 18 17 15 20 20 C 1.37959 * 107.08664 * 180.02562 * 19 18 17 21 21 C 1.46493 * 126.16453 * 180.02562 * 20 19 18 22 22 O 1.21622 * 120.00229 * 359.97438 * 21 20 19 23 23 O 1.34899 * 119.99667 * 179.97438 * 21 20 19 24 24 C 1.45195 * 116.99874 * 180.02562 * 23 21 20 25 25 N 1.37684 * 107.66967 * 0.02562 * 20 19 18 26 26 C 1.46498 * 125.63969 * 179.97438 * 25 20 19 27 27 C 1.35740 * 108.72796 * 0.26527 * 25 20 19 28 28 H 1.09004 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47170 * 300.00295 * 1 2 3 30 30 H 1.09003 * 109.46707 * 60.00742 * 1 2 3 31 31 H 1.09000 * 109.47612 * 239.99535 * 2 1 3 32 32 H 1.09008 * 109.47139 * 119.99411 * 2 1 3 33 33 H 1.09003 * 109.46778 * 23.14795 * 4 3 2 34 34 H 1.09004 * 109.47005 * 143.14678 * 4 3 2 35 35 H 0.96994 * 120.00635 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00006 * 359.97438 * 17 15 13 37 37 H 1.08004 * 126.45569 * 0.02562 * 19 18 17 38 38 H 1.09003 * 109.47341 * 180.02562 * 24 23 21 39 39 H 1.09002 * 109.47155 * 300.00411 * 24 23 21 40 40 H 1.09000 * 109.47402 * 59.99924 * 24 23 21 41 41 H 1.08994 * 109.47105 * 89.99740 * 26 25 20 42 42 H 1.09003 * 109.47038 * 330.00247 * 26 25 20 43 43 H 1.08995 * 109.47381 * 210.00741 * 26 25 20 44 44 H 1.08000 * 125.61241 * 179.74109 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3669 2.0348 -1.2639 5 6 3.8533 1.9315 -1.4897 6 1 4.4761 1.4295 -0.7640 7 6 4.4181 2.4778 -2.6226 8 7 3.6599 3.0895 -3.5060 9 14 6.2606 2.3490 -2.9028 10 1 6.5612 1.1041 -3.6544 11 1 6.7257 3.5233 -3.6838 12 1 6.9594 2.3175 -1.5929 13 6 2.1469 2.0506 1.1628 14 8 1.9284 1.4866 2.2149 15 6 2.5582 3.4860 1.1563 16 8 2.8698 4.0235 0.1133 17 7 2.5835 4.1849 2.3084 18 6 2.9698 5.5349 2.3023 19 6 3.3531 6.2802 1.1781 20 6 3.6504 7.5535 1.6180 21 6 4.0961 8.6736 0.7856 22 8 4.2346 8.5230 -0.4132 23 8 4.3528 9.8721 1.3490 24 6 4.7900 10.9366 0.4636 25 7 3.4528 7.5818 2.9803 26 6 3.6545 8.7447 3.8481 27 6 3.0463 6.3523 3.3873 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.8401 1.5457 -2.0833 34 1 2.0780 3.0850 -1.2217 35 1 4.0572 3.4741 -4.3029 36 1 2.3342 3.7555 3.1417 37 1 3.4057 5.9244 0.1597 38 1 4.9618 11.8437 1.0430 39 1 5.7155 10.6409 -0.0307 40 1 4.0216 11.1241 -0.2864 41 1 2.7268 9.3129 3.9156 42 1 4.4384 9.3773 3.4316 43 1 3.9484 8.4093 4.8426 44 1 2.8178 6.0703 4.4045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275629468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:49 Heat of formation + Delta-G solvation = -75.790569 kcal Electronic energy + Delta-G solvation = -29728.307327 eV Core-core repulsion = 25455.422494 eV Total energy + Delta-G solvation = -4272.884833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55792 -40.13377 -39.68207 -37.82680 -36.43198 -35.69076 -34.37495 -32.58188 -31.95235 -30.44700 -29.72521 -27.56683 -27.01520 -26.48688 -24.61143 -23.34014 -22.90479 -21.92751 -20.32202 -20.12908 -18.79283 -18.12390 -17.01254 -16.81756 -16.53478 -16.41124 -16.02463 -15.54901 -15.36308 -15.03359 -15.00901 -14.69775 -14.12859 -13.92310 -13.69426 -13.43160 -13.31676 -13.07350 -12.91425 -12.72639 -12.44349 -12.26615 -12.20601 -12.06797 -11.93478 -11.64319 -11.40863 -10.91359 -10.86787 -10.76892 -10.65792 -10.58038 -10.41496 -10.29719 -9.87024 -9.58658 -8.62742 -8.43650 -8.17025 -7.79475 -7.52592 -5.94054 -3.96698 1.23826 2.03512 2.51540 2.59952 2.79279 3.14144 3.27470 3.37728 3.45398 3.48856 4.05477 4.22307 4.54144 4.64807 4.70259 4.91873 4.93931 5.02789 5.05494 5.11106 5.30451 5.35662 5.42526 5.45398 5.57120 5.73008 5.82311 5.82595 6.02946 6.19720 6.24882 6.31124 6.49838 6.57895 6.71503 6.76550 7.07191 7.23155 7.46091 7.53279 7.72265 7.77896 7.94860 8.18775 8.28822 8.49201 8.76932 9.05108 9.66390 11.14769 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.004006 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.972591 B = 6988.004647 C = 9043.942111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.558 5.558 4 C 0.220 3.780 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.276 1.276 13 C 0.510 3.490 14 O -0.564 6.564 15 C 0.491 3.509 16 O -0.437 6.437 17 N -0.635 5.635 18 C 0.067 3.933 19 C -0.087 4.087 20 C -0.043 4.043 21 C 0.535 3.465 22 O -0.486 6.486 23 O -0.367 6.367 24 C 0.037 3.963 25 N -0.420 5.420 26 C 0.073 3.927 27 C -0.005 4.005 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.415 0.585 37 H 0.183 0.817 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 11.326 15.108 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.288 5.288 4 C 0.102 3.898 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.132 4.132 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.293 3.707 14 O -0.446 6.446 15 C 0.273 3.727 16 O -0.305 6.305 17 N -0.284 5.284 18 C -0.033 4.033 19 C -0.115 4.115 20 C -0.153 4.153 21 C 0.380 3.620 22 O -0.372 6.372 23 O -0.285 6.285 24 C -0.057 4.057 25 N -0.097 5.097 26 C -0.068 4.068 27 C -0.142 4.142 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.251 0.749 37 H 0.200 0.800 38 H 0.118 0.882 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.466 11.783 14.401 18.769 hybrid contribution 1.057 -0.122 0.058 1.066 sum -1.409 11.661 14.459 18.628 Atomic orbital electron populations 1.22117 0.96352 1.01583 1.02192 1.21422 0.93723 0.83013 1.03031 1.48323 1.58990 1.12950 1.08523 1.20142 0.96361 0.95549 0.77768 1.21213 0.92127 1.36595 1.05927 0.92838 1.24787 0.97749 0.94783 0.95865 1.69904 1.35178 1.36729 1.10813 0.86599 0.85848 0.77386 0.78173 1.20832 1.21104 1.20050 1.19677 0.79510 0.87034 0.84511 1.90635 1.53184 1.69687 1.31098 1.20347 0.80494 0.88227 0.83677 1.90864 1.40830 1.69535 1.29299 1.42562 1.66800 1.07828 1.11162 1.16840 1.07544 0.85013 0.93896 1.21955 0.99613 0.89002 1.00968 1.19285 1.18789 0.94714 0.82464 1.19764 0.74760 0.81207 0.86253 1.90976 1.48439 1.83014 1.14818 1.86564 1.79141 1.20702 1.42125 1.23249 1.00471 0.87580 0.94391 1.43640 1.50300 1.09679 1.06079 1.22208 1.03773 0.86648 0.94141 1.21318 1.09909 0.84286 0.98718 0.92045 0.92663 0.92348 0.89737 0.90852 0.95135 0.90522 0.92833 0.74885 0.80012 0.88213 0.91740 0.91723 0.90603 0.88466 0.89697 0.80792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.20 37.16 0.38 -2.12 16 2 C 0.11 2.00 6.08 -4.04 -0.02 1.98 16 3 N -0.56 -12.10 2.49 -175.61 -0.44 -12.54 16 4 C 0.22 5.59 4.75 -5.19 -0.02 5.57 16 5 C -0.52 -14.55 8.36 -34.44 -0.29 -14.84 16 6 H 0.05 1.52 7.81 -52.48 -0.41 1.11 16 7 C 0.07 2.03 5.46 -17.82 -0.10 1.94 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.51 10.80 7.63 -11.64 -0.09 10.71 16 14 O -0.56 -11.73 16.12 5.49 0.09 -11.64 16 15 C 0.49 10.20 7.74 -11.65 -0.09 10.11 16 16 O -0.44 -10.59 9.56 5.46 0.05 -10.54 16 17 N -0.64 -10.50 5.45 -10.48 -0.06 -10.55 16 18 C 0.07 1.08 6.90 -83.96 -0.58 0.50 16 19 C -0.09 -1.62 9.43 -38.94 -0.37 -1.99 16 20 C -0.04 -0.68 6.88 -82.01 -0.56 -1.24 16 21 C 0.54 8.47 7.92 34.06 0.27 8.74 16 22 O -0.49 -9.47 16.67 -19.36 -0.32 -9.80 16 23 O -0.37 -4.31 7.98 -41.04 -0.33 -4.64 16 24 C 0.04 0.33 10.57 101.05 1.07 1.39 16 25 N -0.42 -4.98 3.17 -120.04 -0.38 -5.36 16 26 C 0.07 0.53 10.56 59.85 0.63 1.16 16 27 C -0.01 -0.06 11.42 -16.60 -0.19 -0.25 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 32 H 0.07 1.29 7.52 -51.92 -0.39 0.90 16 33 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 34 H 0.08 2.11 5.37 -51.93 -0.28 1.84 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.41 5.68 8.30 -40.82 -0.34 5.35 16 37 H 0.18 4.09 5.97 -52.48 -0.31 3.78 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.72 6.14 -51.93 -0.32 0.40 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -35.52 378.14 -5.76 -41.28 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.82 Total: 4.73 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 0.03 Total: 21.66 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.14 Total: -54.18 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -0.51 Total: -36.62 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.52 -5.76 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275629468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.513 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds