Wall clock time and date at job start Tue Mar 31 2020 22:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47040 * 2 1 4 4 C 1.46504 * 119.99798 * 264.98927 * 3 2 1 5 5 C 1.50698 * 109.47366 * 263.14599 * 4 3 2 6 6 H 1.08003 * 119.99879 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00133 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00240 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47183 * 90.00020 * 9 7 5 11 11 H 1.48498 * 109.47015 * 210.00033 * 9 7 5 12 12 H 1.48496 * 109.47051 * 329.99617 * 9 7 5 13 13 C 1.34781 * 120.00197 * 84.99164 * 3 2 1 14 14 O 1.21357 * 119.99945 * 4.03512 * 13 3 2 15 15 C 1.49321 * 119.99660 * 184.03046 * 13 3 2 16 16 O 1.21398 * 120.00435 * 354.69797 * 15 13 3 17 17 N 1.34778 * 119.99628 * 174.70285 * 15 13 3 18 18 C 1.40419 * 119.99973 * 180.02562 * 17 15 13 19 19 C 1.40228 * 126.13247 * 359.96780 * 18 17 15 20 20 C 1.37959 * 107.08664 * 180.02562 * 19 18 17 21 21 C 1.46493 * 126.16453 * 180.02562 * 20 19 18 22 22 O 1.21622 * 120.00229 * 359.97438 * 21 20 19 23 23 O 1.34899 * 119.99667 * 179.97438 * 21 20 19 24 24 C 1.45195 * 116.99874 * 180.02562 * 23 21 20 25 25 N 1.37684 * 107.66967 * 0.02562 * 20 19 18 26 26 C 1.46498 * 125.63969 * 179.97438 * 25 20 19 27 27 C 1.35740 * 108.72796 * 0.26527 * 25 20 19 28 28 H 1.09004 * 109.46646 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47170 * 300.00295 * 1 2 3 30 30 H 1.09003 * 109.46707 * 60.00742 * 1 2 3 31 31 H 1.09000 * 109.47612 * 239.99535 * 2 1 3 32 32 H 1.09008 * 109.47139 * 119.99411 * 2 1 3 33 33 H 1.09003 * 109.46778 * 23.14795 * 4 3 2 34 34 H 1.09004 * 109.47005 * 143.14678 * 4 3 2 35 35 H 0.96994 * 120.00635 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00006 * 359.97438 * 17 15 13 37 37 H 1.08004 * 126.45569 * 0.02562 * 19 18 17 38 38 H 1.09003 * 109.47341 * 180.02562 * 24 23 21 39 39 H 1.09002 * 109.47155 * 300.00411 * 24 23 21 40 40 H 1.09000 * 109.47402 * 59.99924 * 24 23 21 41 41 H 1.08994 * 109.47105 * 89.99740 * 26 25 20 42 42 H 1.09003 * 109.47038 * 330.00247 * 26 25 20 43 43 H 1.08995 * 109.47381 * 210.00741 * 26 25 20 44 44 H 1.08000 * 125.61241 * 179.74109 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3669 2.0348 -1.2639 5 6 3.8533 1.9315 -1.4897 6 1 4.4761 1.4295 -0.7640 7 6 4.4181 2.4778 -2.6226 8 7 3.6599 3.0895 -3.5060 9 14 6.2606 2.3490 -2.9028 10 1 6.5612 1.1041 -3.6544 11 1 6.7257 3.5233 -3.6838 12 1 6.9594 2.3175 -1.5929 13 6 2.1469 2.0506 1.1628 14 8 1.9284 1.4866 2.2149 15 6 2.5582 3.4860 1.1563 16 8 2.8698 4.0235 0.1133 17 7 2.5835 4.1849 2.3084 18 6 2.9698 5.5349 2.3023 19 6 3.3531 6.2802 1.1781 20 6 3.6504 7.5535 1.6180 21 6 4.0961 8.6736 0.7856 22 8 4.2346 8.5230 -0.4132 23 8 4.3528 9.8721 1.3490 24 6 4.7900 10.9366 0.4636 25 7 3.4528 7.5818 2.9803 26 6 3.6545 8.7447 3.8481 27 6 3.0463 6.3523 3.3873 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.8401 1.5457 -2.0833 34 1 2.0780 3.0850 -1.2217 35 1 4.0572 3.4741 -4.3029 36 1 2.3342 3.7555 3.1417 37 1 3.4057 5.9244 0.1597 38 1 4.9618 11.8437 1.0430 39 1 5.7155 10.6409 -0.0307 40 1 4.0216 11.1241 -0.2864 41 1 2.7268 9.3129 3.9156 42 1 4.4384 9.3773 3.4316 43 1 3.9484 8.4093 4.8426 44 1 2.8178 6.0703 4.4045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275629468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:48 Heat of formation + Delta-G solvation = -100.717379 kcal Electronic energy + Delta-G solvation = -29729.388234 eV Core-core repulsion = 25455.422494 eV Total energy + Delta-G solvation = -4273.965740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.72819 -41.62676 -40.94144 -39.40910 -37.59424 -37.36730 -35.79345 -34.68360 -33.03540 -32.02025 -30.85948 -29.01921 -28.44133 -27.54167 -26.00648 -24.92759 -24.51925 -23.28738 -21.55036 -21.40043 -20.26275 -19.37091 -18.71199 -18.27782 -18.02165 -17.68118 -17.60791 -16.81991 -16.66711 -16.47612 -16.35125 -16.14457 -15.80193 -15.25993 -14.98684 -14.82017 -14.47105 -14.37455 -14.35902 -14.21581 -13.62308 -13.53440 -13.45522 -13.30063 -13.16468 -13.12933 -12.86856 -12.72408 -12.66261 -12.29332 -12.06135 -11.92112 -11.90558 -11.75708 -11.71959 -11.58883 -10.63645 -10.05579 -9.62653 -9.56798 -8.75362 -8.14470 -6.23333 0.06027 0.44304 1.34047 1.36766 1.38770 1.46572 1.48862 1.56018 1.91423 1.97208 2.38584 2.48324 2.74164 3.19343 3.48849 3.69012 3.96769 4.10140 4.17638 4.27536 4.29924 4.34731 4.37120 4.53016 4.53672 4.64511 4.69795 4.79361 4.82189 4.89986 4.94176 5.02533 5.08350 5.16284 5.28398 5.42134 5.54616 5.61565 5.78218 5.85071 6.12121 6.18218 6.26777 6.39870 6.61115 6.82887 6.92161 7.21365 7.43121 8.93428 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.004006 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.972591 B = 6988.004647 C = 9043.942111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.566 5.566 4 C 0.240 3.760 5 C -0.523 4.523 6 H 0.045 0.955 7 C 0.021 3.979 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.509 3.491 14 O -0.558 6.558 15 C 0.483 3.517 16 O -0.484 6.484 17 N -0.612 5.612 18 C 0.027 3.973 19 C -0.128 4.128 20 C -0.059 4.059 21 C 0.539 3.461 22 O -0.539 6.539 23 O -0.349 6.349 24 C 0.028 3.972 25 N -0.400 5.400 26 C 0.062 3.938 27 C 0.048 3.952 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.053 0.947 35 H 0.262 0.738 36 H 0.430 0.570 37 H 0.129 0.871 38 H 0.147 0.853 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 12.131 19.040 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.296 5.296 4 C 0.120 3.880 5 C -0.561 4.561 6 H 0.063 0.937 7 C -0.179 4.179 8 N -0.560 5.560 9 Si 0.775 3.225 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.440 6.440 15 C 0.264 3.736 16 O -0.356 6.356 17 N -0.261 5.261 18 C -0.072 4.072 19 C -0.157 4.157 20 C -0.170 4.170 21 C 0.386 3.614 22 O -0.429 6.429 23 O -0.266 6.266 24 C -0.065 4.065 25 N -0.075 5.075 26 C -0.076 4.076 27 C -0.091 4.091 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.270 0.730 37 H 0.147 0.853 38 H 0.164 0.836 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.283 12.612 18.430 22.449 hybrid contribution 0.978 -0.236 -0.976 1.402 sum -1.306 12.377 17.454 21.437 Atomic orbital electron populations 1.22038 0.93987 1.03617 1.01521 1.21688 0.95677 0.81037 1.03405 1.48287 1.59537 1.14346 1.07450 1.19607 0.94896 0.94459 0.79050 1.21414 0.93390 1.35882 1.05452 0.93713 1.25541 1.01834 0.94623 0.95860 1.70016 1.36835 1.37814 1.11320 0.85693 0.80959 0.77873 0.77956 1.18835 1.21316 1.20181 1.19799 0.79304 0.87326 0.84401 1.90615 1.53072 1.69755 1.30548 1.20429 0.80514 0.88288 0.84357 1.90888 1.43387 1.70196 1.31087 1.42273 1.65283 1.08108 1.10392 1.17038 1.10474 0.84997 0.94665 1.21577 1.02729 0.91484 0.99896 1.19038 1.19734 0.93749 0.84529 1.19881 0.73743 0.82283 0.85521 1.90947 1.50946 1.84005 1.17035 1.86562 1.78383 1.19718 1.41930 1.23622 0.99817 0.87926 0.95090 1.44041 1.47511 1.11088 1.04842 1.22683 1.05012 0.85184 0.94766 1.22092 1.04871 0.82650 0.99531 0.88612 0.93116 0.93165 0.89713 0.90067 0.96315 0.92943 0.92905 0.73049 0.85342 0.83551 0.92473 0.92295 0.88520 0.88596 0.85682 0.74937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 10.20 71.98 0.73 -3.78 16 2 C 0.10 3.71 6.08 86.38 0.53 4.24 16 3 N -0.57 -25.26 2.49 -827.87 -2.06 -27.32 16 4 C 0.24 12.85 4.75 85.63 0.41 13.26 16 5 C -0.52 -30.47 8.36 25.60 0.21 -30.25 16 6 H 0.04 2.63 7.81 -2.91 -0.02 2.60 16 7 C 0.02 1.24 5.46 84.65 0.46 1.70 16 8 N -0.92 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.95 47.46 29.54 68.60 2.03 49.49 16 10 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 13 C 0.51 21.93 7.63 87.23 0.67 22.60 16 14 O -0.56 -22.77 16.12 -3.27 -0.05 -22.82 16 15 C 0.48 20.93 7.74 87.23 0.67 21.61 16 16 O -0.48 -25.38 9.56 -3.39 -0.03 -25.41 16 17 N -0.61 -20.13 5.45 -305.41 -1.66 -21.80 16 18 C 0.03 0.85 6.90 37.74 0.26 1.11 16 19 C -0.13 -5.08 9.43 22.69 0.21 -4.86 16 20 C -0.06 -1.90 6.88 40.31 0.28 -1.62 16 21 C 0.54 17.61 7.92 69.97 0.55 18.16 16 22 O -0.54 -22.68 16.67 19.44 0.32 -22.35 16 23 O -0.35 -7.80 7.98 -58.14 -0.46 -8.26 16 24 C 0.03 0.47 10.57 113.37 1.20 1.66 16 25 N -0.40 -8.23 3.17 -533.68 -1.69 -9.92 16 26 C 0.06 0.58 10.56 127.77 1.35 1.93 16 27 C 0.05 0.95 11.42 83.58 0.95 1.90 16 28 H 0.10 2.15 8.14 -2.38 -0.02 2.14 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 3.00 8.03 -2.39 -0.02 2.98 16 32 H 0.08 2.77 7.52 -2.38 -0.02 2.75 16 33 H 0.02 1.04 8.02 -2.39 -0.02 1.02 16 34 H 0.05 3.13 5.37 -2.45 -0.01 3.11 16 35 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.43 11.01 8.30 -92.71 -0.77 10.24 16 37 H 0.13 6.55 5.97 -2.91 -0.02 6.53 16 38 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 1.02 6.14 -2.39 -0.01 1.00 16 43 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -85.54 378.14 5.44 -80.11 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.28 Total: 17.74 kcal Atomic # 6 Polarization: 39.16 SS G_CDS: 8.49 Total: 47.65 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -5.13 Total: -116.13 kcal Atomic # 8 Polarization: -78.62 SS G_CDS: -0.23 Total: -78.85 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -85.54 5.44 -80.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275629468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.612 kcal (2) G-P(sol) polarization free energy of solvation -85.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds