Wall clock time and date at job start Tue Mar 31 2020 21:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34893 * 117.00229 * 2 1 4 4 O 1.21633 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.46484 * 119.99938 * 179.97438 * 3 2 1 6 6 C 1.37964 * 126.16371 * 179.97438 * 5 3 2 7 7 C 1.40230 * 107.08673 * 180.02562 * 6 5 3 8 8 N 1.40416 * 126.13526 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99955 * 0.02992 * 8 7 6 10 10 O 1.21408 * 119.99617 * 359.97438 * 9 8 7 11 11 C 1.49318 * 120.00300 * 180.02562 * 9 8 7 12 12 O 1.21366 * 119.99506 * 5.66009 * 11 9 8 13 13 N 1.34775 * 120.00426 * 185.66700 * 11 9 8 14 14 C 1.46504 * 119.99383 * 5.69306 * 13 11 9 15 15 C 1.46499 * 120.00043 * 185.69541 * 13 11 9 16 16 H 1.08996 * 109.47532 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.46774 * 239.99353 * 15 13 11 18 18 C 1.50701 * 109.46900 * 120.00086 * 15 13 11 19 19 H 1.07994 * 120.00063 * 5.27957 * 18 15 13 20 20 C 1.37876 * 120.00065 * 185.28071 * 18 15 13 21 21 N 1.31506 * 120.00180 * 184.86623 * 20 18 15 22 22 Si 1.86807 * 119.99758 * 5.14711 * 20 18 15 23 23 H 1.48499 * 109.47128 * 269.72410 * 22 20 18 24 24 H 1.48502 * 109.47003 * 29.72143 * 22 20 18 25 25 H 1.48500 * 109.47064 * 149.72050 * 22 20 18 26 26 C 1.36061 * 107.73377 * 0.26777 * 7 6 5 27 27 N 1.35738 * 108.77735 * 359.56649 * 26 7 6 28 28 C 1.46501 * 125.63199 * 180.15088 * 27 26 7 29 29 H 1.08992 * 109.47143 * 299.99927 * 1 2 3 30 30 H 1.09004 * 109.47014 * 59.99717 * 1 2 3 31 31 H 1.08995 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.08002 * 126.45762 * 359.97438 * 6 5 3 33 33 H 0.97004 * 120.00309 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47181 * 275.68982 * 14 13 11 35 35 H 1.08998 * 109.47476 * 35.69676 * 14 13 11 36 36 H 1.09004 * 109.46795 * 155.69802 * 14 13 11 37 37 H 1.09004 * 109.47407 * 54.92631 * 17 15 13 38 38 H 1.09006 * 109.47087 * 174.91705 * 17 15 13 39 39 H 1.09003 * 109.47893 * 294.92248 * 17 15 13 40 40 H 0.96996 * 120.00590 * 355.27948 * 21 20 18 41 41 H 1.07995 * 125.60527 * 179.73546 * 26 7 6 42 42 H 1.08993 * 109.47125 * 270.33615 * 28 27 26 43 43 H 1.09007 * 109.46981 * 30.33485 * 28 27 26 44 44 H 1.08997 * 109.47061 * 150.33120 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2821 2.4333 0.0001 7 6 5.6296 2.0449 0.0004 8 7 6.7393 2.9053 0.0006 9 6 6.5567 4.2406 0.0012 10 8 5.4327 4.6996 0.0011 11 6 7.7367 5.1556 0.0008 12 8 8.8571 4.7008 -0.1037 13 7 7.5578 6.4864 0.1167 14 6 6.2192 7.0262 0.3679 15 6 8.7017 7.3930 -0.0086 16 1 9.6064 6.8133 -0.1920 17 6 8.8626 8.1928 1.2856 18 6 8.4691 8.3392 -1.1582 19 1 7.5254 8.3293 -1.6833 20 6 9.4610 9.2176 -1.5397 21 7 9.2256 10.1079 -2.4785 22 14 11.1418 9.1379 -0.7283 23 1 11.1610 10.0295 0.4591 24 1 11.4209 7.7425 -0.3040 25 1 12.1794 9.5784 -1.6949 26 6 5.6688 0.6849 -0.0051 27 7 4.3969 0.2110 0.0009 28 6 4.0128 -1.2027 0.0010 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9061 3.4458 -0.0011 33 1 7.6373 2.5386 0.0003 34 1 5.6866 7.1314 -0.5773 35 1 5.6703 6.3475 1.0207 36 1 6.3048 8.0015 0.8472 37 1 8.9406 7.5071 2.1293 38 1 9.7654 8.8009 1.2271 39 1 7.9966 8.8405 1.4227 40 1 8.3782 10.1027 -2.9504 41 1 6.5647 0.0818 -0.0105 42 1 3.9179 -1.5535 -1.0266 43 1 4.7762 -1.7866 0.5152 44 1 3.0585 -1.3199 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275968796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:02 Heat of formation + Delta-G solvation = -78.330076 kcal Electronic energy + Delta-G solvation = -29069.523440 eV Core-core repulsion = 24796.528485 eV Total energy + Delta-G solvation = -4272.994954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89356 -40.46566 -39.97247 -38.14893 -36.72521 -36.02271 -34.89493 -32.74459 -32.27087 -30.30568 -30.03922 -27.82934 -26.91078 -26.28647 -24.99199 -24.36992 -23.46997 -21.40746 -20.63611 -20.03752 -18.99600 -18.36957 -17.57980 -17.29657 -16.93170 -16.81451 -16.43743 -15.84918 -15.79944 -15.43900 -15.35917 -14.81167 -14.18250 -14.04847 -13.85631 -13.59685 -13.43176 -13.19583 -12.98046 -12.84922 -12.71417 -12.57621 -12.50942 -12.34103 -11.98510 -11.75132 -11.59822 -11.35975 -11.17800 -10.97925 -10.87960 -10.70900 -10.55222 -10.04035 -9.75600 -8.95977 -8.88324 -8.77212 -8.52808 -8.00664 -7.85323 -6.49189 -4.18495 0.92474 1.60900 2.22525 2.30306 2.49158 2.84435 2.94669 3.33967 3.45047 3.57439 3.69150 3.97220 4.36352 4.42723 4.46315 4.62926 4.71575 4.75975 4.81233 4.83230 5.05815 5.10495 5.18417 5.23921 5.49235 5.66326 5.88637 5.96489 6.02059 6.19679 6.22940 6.33425 6.36859 6.44155 6.55873 6.73031 6.82278 6.85663 6.96839 7.19325 7.31991 7.46641 7.71699 7.93540 8.14448 8.31054 8.48810 8.83770 9.52264 10.89135 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002387 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.852861 B =11725.832104 C =12389.675786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.538 3.462 4 O -0.492 6.492 5 C -0.042 4.042 6 C -0.090 4.090 7 C 0.059 3.941 8 N -0.624 5.624 9 C 0.508 3.492 10 O -0.498 6.498 11 C 0.498 3.502 12 O -0.540 6.540 13 N -0.547 5.547 14 C 0.087 3.913 15 C 0.225 3.775 16 H 0.065 0.935 17 C -0.159 4.159 18 C -0.605 4.605 19 H 0.064 0.936 20 C 0.033 3.967 21 N -0.906 5.906 22 Si 1.050 2.950 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.287 1.287 26 C 0.005 3.995 27 N -0.416 5.416 28 C 0.071 3.929 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.178 0.822 33 H 0.422 0.578 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.179 0.821 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 -25.295 7.719 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.383 3.617 4 O -0.379 6.379 5 C -0.152 4.152 6 C -0.118 4.118 7 C -0.041 4.041 8 N -0.271 5.271 9 C 0.291 3.709 10 O -0.372 6.372 11 C 0.279 3.721 12 O -0.419 6.419 13 N -0.277 5.277 14 C -0.056 4.056 15 C 0.124 3.876 16 H 0.083 0.917 17 C -0.218 4.218 18 C -0.643 4.643 19 H 0.082 0.918 20 C -0.172 4.172 21 N -0.539 5.539 22 Si 0.878 3.122 23 H -0.208 1.208 24 H -0.200 1.200 25 H -0.213 1.213 26 C -0.133 4.133 27 N -0.092 5.092 28 C -0.070 4.070 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.196 0.804 33 H 0.259 0.741 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.196 0.804 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.455 -24.422 7.708 28.055 hybrid contribution -1.351 -0.863 -0.230 1.620 sum -12.806 -25.286 7.479 29.314 Atomic orbital electron populations 1.23283 0.75792 1.03670 1.02947 1.86572 1.23858 1.32771 1.85103 1.19721 0.86837 0.81727 0.73389 1.90944 1.65314 1.35688 1.45959 1.19284 0.86717 0.87475 1.21749 1.21782 0.89945 0.98433 1.01686 1.16848 0.87747 0.88927 1.10620 1.42545 1.08500 1.04725 1.71309 1.20643 0.90382 0.82622 0.77282 1.90661 1.24986 1.75449 1.46139 1.19614 0.88184 0.83880 0.80409 1.90704 1.24424 1.75742 1.51052 1.47938 1.11124 1.04306 1.64345 1.21923 0.82472 0.99558 1.01673 1.19614 0.85254 0.88206 0.94508 0.91717 1.22415 1.01710 0.99926 0.97706 1.22245 1.03567 1.21734 1.16747 0.91798 1.25715 1.03128 0.91913 0.96458 1.70807 1.27385 1.32534 1.23221 0.83948 0.75682 0.76783 0.75741 1.20820 1.19981 1.21345 1.21423 0.87671 0.92975 1.11219 1.43710 1.04984 1.06416 1.54113 1.22276 1.03318 0.77349 1.04065 0.91674 0.91652 0.88010 0.80449 0.74104 0.92438 0.90613 0.91161 0.94782 0.92547 0.92485 0.92111 0.80431 0.90325 0.89414 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.29 16 2 O -0.37 -3.25 7.98 -41.02 -0.33 -3.58 16 3 C 0.54 6.63 7.92 34.05 0.27 6.90 16 4 O -0.49 -7.55 16.68 -19.37 -0.32 -7.87 16 5 C -0.04 -0.52 6.88 -82.02 -0.56 -1.08 16 6 C -0.09 -1.31 9.43 -38.93 -0.37 -1.67 16 7 C 0.06 0.75 6.90 -83.96 -0.58 0.17 16 8 N -0.62 -8.61 5.45 -10.48 -0.06 -8.67 16 9 C 0.51 8.80 7.67 -11.65 -0.09 8.71 16 10 O -0.50 -9.15 10.55 5.45 0.06 -9.10 16 11 C 0.50 10.14 7.72 -11.65 -0.09 10.05 16 12 O -0.54 -11.79 15.83 5.48 0.09 -11.71 16 13 N -0.55 -11.84 2.75 -175.82 -0.48 -12.32 16 14 C 0.09 1.65 8.37 59.85 0.50 2.15 16 15 C 0.23 5.45 2.20 -69.08 -0.15 5.30 16 16 H 0.07 1.68 5.42 -51.93 -0.28 1.40 16 17 C -0.16 -3.39 8.67 37.16 0.32 -3.07 16 18 C -0.60 -16.77 8.77 -34.44 -0.30 -17.07 16 19 H 0.06 1.91 7.79 -52.49 -0.41 1.50 16 20 C 0.03 0.95 5.43 -17.82 -0.10 0.85 16 21 N -0.91 -27.56 13.70 55.43 0.76 -26.80 16 22 Si 1.05 25.21 25.28 -169.99 -4.30 20.91 16 23 H -0.28 -6.31 6.82 56.52 0.39 -5.92 16 24 H -0.27 -6.29 6.35 56.52 0.36 -5.93 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.00 0.04 11.42 -16.61 -0.19 -0.15 16 27 N -0.42 -3.79 3.17 -120.04 -0.38 -4.17 16 28 C 0.07 0.35 10.56 59.85 0.63 0.98 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.18 2.97 5.97 -52.49 -0.31 2.66 16 33 H 0.42 4.94 8.31 -40.82 -0.34 4.60 16 34 H 0.06 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.08 1.32 6.00 -51.93 -0.31 1.01 16 36 H 0.07 1.30 6.54 -51.93 -0.34 0.96 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.21 4.40 -51.93 -0.23 0.98 16 39 H 0.06 1.17 6.87 -51.93 -0.36 0.81 16 40 H 0.27 8.17 8.72 -40.82 -0.36 7.81 16 41 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.49 6.14 -51.93 -0.32 0.17 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -35.29 365.29 -4.58 -39.88 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.49 Total: 4.56 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 0.36 Total: 13.36 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.16 Total: -51.96 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.51 Total: -32.26 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -4.30 Total: 20.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.29 -4.58 -39.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275968796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.452 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds