Wall clock time and date at job start Tue Mar 31 2020 21:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34893 * 117.00229 * 2 1 4 4 O 1.21633 * 119.99880 * 0.02562 * 3 2 1 5 5 C 1.46484 * 119.99938 * 179.97438 * 3 2 1 6 6 C 1.37964 * 126.16371 * 179.97438 * 5 3 2 7 7 C 1.40230 * 107.08673 * 180.02562 * 6 5 3 8 8 N 1.40416 * 126.13526 * 180.02562 * 7 6 5 9 9 C 1.34780 * 119.99955 * 0.02992 * 8 7 6 10 10 O 1.21408 * 119.99617 * 359.97438 * 9 8 7 11 11 C 1.49318 * 120.00300 * 180.02562 * 9 8 7 12 12 O 1.21366 * 119.99506 * 5.66009 * 11 9 8 13 13 N 1.34775 * 120.00426 * 185.66700 * 11 9 8 14 14 C 1.46504 * 119.99383 * 5.69306 * 13 11 9 15 15 C 1.46499 * 120.00043 * 185.69541 * 13 11 9 16 16 H 1.08996 * 109.47532 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.46774 * 239.99353 * 15 13 11 18 18 C 1.50701 * 109.46900 * 120.00086 * 15 13 11 19 19 H 1.07994 * 120.00063 * 5.27957 * 18 15 13 20 20 C 1.37876 * 120.00065 * 185.28071 * 18 15 13 21 21 N 1.31506 * 120.00180 * 184.86623 * 20 18 15 22 22 Si 1.86807 * 119.99758 * 5.14711 * 20 18 15 23 23 H 1.48499 * 109.47128 * 269.72410 * 22 20 18 24 24 H 1.48502 * 109.47003 * 29.72143 * 22 20 18 25 25 H 1.48500 * 109.47064 * 149.72050 * 22 20 18 26 26 C 1.36061 * 107.73377 * 0.26777 * 7 6 5 27 27 N 1.35738 * 108.77735 * 359.56649 * 26 7 6 28 28 C 1.46501 * 125.63199 * 180.15088 * 27 26 7 29 29 H 1.08992 * 109.47143 * 299.99927 * 1 2 3 30 30 H 1.09004 * 109.47014 * 59.99717 * 1 2 3 31 31 H 1.08995 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.08002 * 126.45762 * 359.97438 * 6 5 3 33 33 H 0.97004 * 120.00309 * 180.02562 * 8 7 6 34 34 H 1.09002 * 109.47181 * 275.68982 * 14 13 11 35 35 H 1.08998 * 109.47476 * 35.69676 * 14 13 11 36 36 H 1.09004 * 109.46795 * 155.69802 * 14 13 11 37 37 H 1.09004 * 109.47407 * 54.92631 * 17 15 13 38 38 H 1.09006 * 109.47087 * 174.91705 * 17 15 13 39 39 H 1.09003 * 109.47893 * 294.92248 * 17 15 13 40 40 H 0.96996 * 120.00590 * 355.27948 * 21 20 18 41 41 H 1.07995 * 125.60527 * 179.73546 * 26 7 6 42 42 H 1.08993 * 109.47125 * 270.33615 * 28 27 26 43 43 H 1.09007 * 109.46981 * 30.33485 * 28 27 26 44 44 H 1.08997 * 109.47061 * 150.33120 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2220 0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2821 2.4333 0.0001 7 6 5.6296 2.0449 0.0004 8 7 6.7393 2.9053 0.0006 9 6 6.5567 4.2406 0.0012 10 8 5.4327 4.6996 0.0011 11 6 7.7367 5.1556 0.0008 12 8 8.8571 4.7008 -0.1037 13 7 7.5578 6.4864 0.1167 14 6 6.2192 7.0262 0.3679 15 6 8.7017 7.3930 -0.0086 16 1 9.6064 6.8133 -0.1920 17 6 8.8626 8.1928 1.2856 18 6 8.4691 8.3392 -1.1582 19 1 7.5254 8.3293 -1.6833 20 6 9.4610 9.2176 -1.5397 21 7 9.2256 10.1079 -2.4785 22 14 11.1418 9.1379 -0.7283 23 1 11.1610 10.0295 0.4591 24 1 11.4209 7.7425 -0.3040 25 1 12.1794 9.5784 -1.6949 26 6 5.6688 0.6849 -0.0051 27 7 4.3969 0.2110 0.0009 28 6 4.0128 -1.2027 0.0010 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.9061 3.4458 -0.0011 33 1 7.6373 2.5386 0.0003 34 1 5.6866 7.1314 -0.5773 35 1 5.6703 6.3475 1.0207 36 1 6.3048 8.0015 0.8472 37 1 8.9406 7.5071 2.1293 38 1 9.7654 8.8009 1.2271 39 1 7.9966 8.8405 1.4227 40 1 8.3782 10.1027 -2.9504 41 1 6.5647 0.0818 -0.0105 42 1 3.9179 -1.5535 -1.0266 43 1 4.7762 -1.7866 0.5152 44 1 3.0585 -1.3199 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275968796.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:01 Heat of formation + Delta-G solvation = -104.241244 kcal Electronic energy + Delta-G solvation = -29070.647032 eV Core-core repulsion = 24796.528485 eV Total energy + Delta-G solvation = -4274.118547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.81417 -41.77277 -40.97371 -39.62556 -37.67675 -37.60136 -36.16538 -34.77081 -33.11153 -32.18011 -30.91135 -28.49361 -28.04796 -27.55421 -26.82975 -25.82281 -24.43124 -22.77386 -21.57627 -21.34378 -20.37263 -19.62884 -19.43633 -18.41774 -18.09093 -17.98877 -17.62730 -17.21022 -16.80627 -16.51140 -16.22155 -16.06909 -15.64660 -15.46701 -14.99685 -14.85257 -14.65615 -14.38025 -14.35214 -14.33401 -13.84509 -13.61751 -13.51190 -13.44737 -13.37224 -13.21804 -13.10015 -12.85779 -12.45458 -12.31755 -11.93862 -11.90736 -11.85728 -11.80043 -11.61942 -11.02275 -10.69336 -10.41253 -9.74275 -9.66933 -8.87812 -8.74422 -6.47057 0.02930 0.21165 1.18988 1.42775 1.47305 1.48217 1.55094 1.70655 1.84008 1.91693 2.27856 2.43782 2.57705 3.04333 3.29024 3.63811 3.90389 4.05780 4.24344 4.29389 4.30696 4.31073 4.44606 4.50605 4.52677 4.61756 4.64638 4.67367 4.70109 4.75136 4.85362 4.87835 4.99580 5.06339 5.15717 5.27363 5.45530 5.47199 5.69584 5.73463 5.96158 6.08516 6.09445 6.38925 6.47304 6.58230 6.74143 6.94407 7.32908 8.59955 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024366 B = 0.002387 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.852861 B =11725.832104 C =12389.675786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.541 3.459 4 O -0.535 6.535 5 C -0.058 4.058 6 C -0.121 4.121 7 C 0.021 3.979 8 N -0.602 5.602 9 C 0.509 3.491 10 O -0.517 6.517 11 C 0.496 3.504 12 O -0.555 6.555 13 N -0.561 5.561 14 C 0.095 3.905 15 C 0.226 3.774 16 H 0.051 0.949 17 C -0.153 4.153 18 C -0.603 4.603 19 H 0.026 0.974 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 1.085 2.915 23 H -0.250 1.250 24 H -0.257 1.257 25 H -0.290 1.290 26 C 0.049 3.951 27 N -0.401 5.401 28 C 0.061 3.939 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.433 0.567 34 H 0.038 0.962 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.253 0.747 41 H 0.229 0.771 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -29.251 9.477 32.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.387 3.613 4 O -0.426 6.426 5 C -0.169 4.169 6 C -0.150 4.150 7 C -0.078 4.078 8 N -0.249 5.249 9 C 0.291 3.709 10 O -0.393 6.393 11 C 0.278 3.722 12 O -0.436 6.436 13 N -0.291 5.291 14 C -0.047 4.047 15 C 0.123 3.877 16 H 0.069 0.931 17 C -0.211 4.211 18 C -0.641 4.641 19 H 0.044 0.956 20 C -0.215 4.215 21 N -0.572 5.572 22 Si 0.907 3.093 23 H -0.175 1.175 24 H -0.182 1.182 25 H -0.216 1.216 26 C -0.091 4.091 27 N -0.075 5.075 28 C -0.078 4.078 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.272 0.728 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.246 0.754 42 H 0.113 0.887 43 H 0.142 0.858 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.570 -28.475 9.482 31.819 hybrid contribution -1.787 0.123 -0.841 1.979 sum -12.356 -28.351 8.641 32.112 Atomic orbital electron populations 1.23621 0.74088 1.06167 1.02536 1.86571 1.25410 1.30611 1.84280 1.19818 0.86972 0.82032 0.72429 1.90920 1.66215 1.37269 1.48170 1.19123 0.87053 0.88052 1.22668 1.21572 0.91622 0.97971 1.03801 1.17009 0.86497 0.90334 1.13931 1.42268 1.09593 1.03450 1.69569 1.20023 0.88931 0.83607 0.78387 1.90682 1.24991 1.75969 1.47642 1.20129 0.89011 0.83826 0.79248 1.90673 1.25386 1.76064 1.51446 1.47950 1.11173 1.04865 1.65140 1.21906 0.81486 1.00214 1.01083 1.19390 0.85674 0.87948 0.94653 0.93096 1.22286 1.01983 1.00090 0.96770 1.22384 1.01847 1.22304 1.17553 0.95588 1.27132 1.06710 0.91318 0.96303 1.70933 1.26778 1.34512 1.24985 0.83529 0.71304 0.78379 0.76082 1.17506 1.18155 1.21624 1.22109 0.88940 0.91680 1.06388 1.44082 1.04416 1.07487 1.51506 1.22691 1.04666 0.74755 1.05676 0.92054 0.92248 0.83950 0.83908 0.72764 0.94288 0.88819 0.90696 0.92009 0.92341 0.92121 0.93831 0.75432 0.88741 0.85846 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.35 -5.71 7.98 -58.08 -0.46 -6.17 16 3 C 0.54 13.33 7.92 69.97 0.55 13.88 16 4 O -0.54 -17.27 16.68 19.40 0.32 -16.95 16 5 C -0.06 -1.39 6.88 40.31 0.28 -1.11 16 6 C -0.12 -3.59 9.43 22.69 0.21 -3.37 16 7 C 0.02 0.50 6.90 37.74 0.26 0.76 16 8 N -0.60 -15.93 5.45 -305.40 -1.66 -17.60 16 9 C 0.51 17.78 7.67 87.23 0.67 18.45 16 10 O -0.52 -19.76 10.55 -3.43 -0.04 -19.80 16 11 C 0.50 20.22 7.72 87.23 0.67 20.89 16 12 O -0.56 -23.97 15.83 -3.30 -0.05 -24.02 16 13 N -0.56 -24.55 2.75 -828.53 -2.28 -26.83 16 14 C 0.10 3.75 8.37 127.77 1.07 4.82 16 15 C 0.23 10.89 2.20 44.24 0.10 10.99 16 16 H 0.05 2.62 5.42 -2.39 -0.01 2.60 16 17 C -0.15 -6.26 8.67 71.98 0.62 -5.64 16 18 C -0.60 -34.38 8.77 25.60 0.22 -34.15 16 19 H 0.03 1.64 7.79 -2.91 -0.02 1.61 16 20 C -0.02 -0.94 5.43 84.66 0.46 -0.48 16 21 N -0.94 -58.79 13.70 21.45 0.29 -58.49 16 22 Si 1.09 50.08 25.28 68.60 1.73 51.81 16 23 H -0.25 -10.28 6.82 99.48 0.68 -9.60 16 24 H -0.26 -11.07 6.35 99.48 0.63 -10.44 16 25 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.05 0.70 11.42 83.58 0.95 1.65 16 27 N -0.40 -5.95 3.17 -533.69 -1.69 -7.64 16 28 C 0.06 0.31 10.56 127.77 1.35 1.66 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.14 5.21 5.97 -2.91 -0.02 5.19 16 33 H 0.43 9.23 8.31 -92.70 -0.77 8.46 16 34 H 0.04 1.64 8.09 -2.39 -0.02 1.63 16 35 H 0.09 3.33 6.00 -2.39 -0.01 3.32 16 36 H 0.07 2.81 6.54 -2.39 -0.02 2.80 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.35 4.40 -2.38 -0.01 2.34 16 39 H 0.06 2.40 6.87 -2.39 -0.02 2.39 16 40 H 0.25 16.17 8.72 -92.71 -0.81 15.36 16 41 H 0.23 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.12 -0.15 8.14 -2.38 -0.02 -0.17 16 44 H 0.10 0.58 6.14 -2.39 -0.01 0.57 16 Total: -1.00 -82.36 365.29 4.94 -77.42 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.16 Total: 18.42 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 8.62 Total: 29.85 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.34 Total: -110.56 kcal Atomic # 8 Polarization: -66.71 SS G_CDS: -0.23 Total: -66.93 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.73 Total: 51.81 kcal Total: -82.36 4.94 -77.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275968796.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.825 kcal (2) G-P(sol) polarization free energy of solvation -82.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds