Wall clock time and date at job start Tue Mar 31 2020 21:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34901 * 116.99900 * 2 1 4 4 O 1.21628 * 120.00058 * 0.02562 * 3 2 1 5 5 C 1.46481 * 119.99831 * 179.97438 * 3 2 1 6 6 C 1.37969 * 126.16940 * 180.02562 * 5 3 2 7 7 C 1.40229 * 107.09232 * 179.97438 * 6 5 3 8 8 N 1.40407 * 126.13265 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00359 * 0.02562 * 8 7 6 10 10 O 1.21408 * 119.99535 * 0.02562 * 9 8 7 11 11 C 1.49316 * 120.00220 * 179.97438 * 9 8 7 12 12 O 1.21368 * 119.99993 * 5.64423 * 11 9 8 13 13 N 1.34775 * 120.00020 * 185.64718 * 11 9 8 14 14 C 1.46498 * 119.99890 * 5.69877 * 13 11 9 15 15 C 1.46497 * 120.00031 * 185.70176 * 13 11 9 16 16 H 1.08994 * 109.47344 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47170 * 119.99943 * 15 13 11 18 18 C 1.50701 * 109.47124 * 239.99704 * 15 13 11 19 19 H 1.07998 * 120.00240 * 334.90325 * 18 15 13 20 20 C 1.37875 * 120.00146 * 154.89871 * 18 15 13 21 21 N 1.31518 * 120.00249 * 174.94432 * 20 18 15 22 22 Si 1.86805 * 119.99976 * 354.95362 * 20 18 15 23 23 H 1.48500 * 109.46582 * 275.02852 * 22 20 18 24 24 H 1.48499 * 109.47097 * 35.02293 * 22 20 18 25 25 H 1.48495 * 109.47330 * 155.02625 * 22 20 18 26 26 C 1.36056 * 107.73155 * 0.24428 * 7 6 5 27 27 N 1.35740 * 108.78497 * 359.60353 * 26 7 6 28 28 C 1.46499 * 125.63866 * 180.15812 * 27 26 7 29 29 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47490 * 299.99680 * 1 2 3 31 31 H 1.09006 * 109.47523 * 59.99751 * 1 2 3 32 32 H 1.08005 * 126.45016 * 359.94818 * 6 5 3 33 33 H 0.96998 * 119.99965 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.47548 * 275.68720 * 14 13 11 35 35 H 1.09000 * 109.47251 * 35.68604 * 14 13 11 36 36 H 1.09003 * 109.46939 * 155.68794 * 14 13 11 37 37 H 1.09001 * 109.47547 * 55.01918 * 17 15 13 38 38 H 1.09004 * 109.47281 * 175.02143 * 17 15 13 39 39 H 1.09003 * 109.47351 * 295.02051 * 17 15 13 40 40 H 0.96995 * 119.99930 * 180.02562 * 21 20 18 41 41 H 1.07994 * 125.60980 * 179.72636 * 26 7 6 42 42 H 1.08995 * 109.47133 * 270.28539 * 28 27 26 43 43 H 1.09001 * 109.46816 * 30.28377 * 28 27 26 44 44 H 1.08998 * 109.47144 * 150.27817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5272 1.2786 0.0006 6 6 4.2820 2.4335 0.0011 7 6 5.6295 2.0451 0.0021 8 7 6.7391 2.9055 0.0025 9 6 6.5565 4.2409 0.0023 10 8 5.4325 4.6998 0.0023 11 6 7.7365 5.1558 0.0032 12 8 8.8571 4.7010 -0.0993 13 7 7.5572 6.4867 0.1179 14 6 6.2183 7.0267 0.3667 15 6 8.7013 7.3933 -0.0063 16 1 9.6062 6.8136 -0.1880 17 6 8.4669 8.3531 -1.1744 18 6 8.8579 8.1820 1.2682 19 1 8.0047 8.3470 1.9095 20 6 10.0905 8.6929 1.6157 21 7 10.2079 9.4641 2.6746 22 14 11.5936 8.2899 0.5824 23 1 12.1647 6.9924 1.0246 24 1 11.2014 8.1967 -0.8468 25 1 12.6096 9.3601 0.7482 26 6 5.6688 0.6852 -0.0034 27 7 4.3968 0.2111 0.0011 28 6 4.0127 -1.2026 0.0008 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9059 3.4459 0.0005 33 1 7.6371 2.5388 0.0028 34 1 5.6871 7.1313 -0.5793 35 1 5.6684 6.3483 1.0191 36 1 6.3032 8.0022 0.8456 37 1 7.5168 8.8692 -1.0357 38 1 9.2750 9.0836 -1.2123 39 1 8.4418 7.7905 -2.1077 40 1 11.0750 9.8238 2.9188 41 1 6.5645 0.0820 -0.0083 42 1 3.9183 -1.5532 -1.0269 43 1 4.7760 -1.7865 0.5153 44 1 3.0583 -1.3199 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275968797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:06 Heat of formation + Delta-G solvation = -77.864174 kcal Electronic energy + Delta-G solvation = -29065.594790 eV Core-core repulsion = 24792.620039 eV Total energy + Delta-G solvation = -4272.974751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87298 -40.44063 -39.94978 -38.11262 -36.71377 -35.97615 -34.85064 -32.63305 -32.24924 -30.36373 -30.02199 -27.81538 -26.88931 -26.22615 -25.29740 -24.50226 -23.46798 -21.41212 -20.61728 -20.03368 -18.98184 -18.35371 -17.33703 -17.21754 -16.80588 -16.75897 -16.32089 -15.82801 -15.75997 -15.46989 -15.17390 -14.87438 -14.34408 -14.13824 -13.69095 -13.56418 -13.40989 -13.26830 -12.96466 -12.68401 -12.58917 -12.55109 -12.35149 -12.32800 -12.29787 -11.71800 -11.51642 -11.17072 -11.14522 -10.96462 -10.85840 -10.73529 -10.63359 -10.42166 -9.81783 -9.32683 -8.85961 -8.75369 -8.62517 -7.96230 -7.78234 -6.17874 -4.20191 0.94062 1.63896 2.24327 2.31988 2.51523 2.86620 2.96707 3.29180 3.35840 3.40715 3.72764 4.00101 4.35667 4.38120 4.48154 4.65349 4.72578 4.78540 4.82407 4.84056 5.07486 5.11970 5.18497 5.20135 5.51000 5.68383 5.97719 5.98299 6.09505 6.20774 6.22345 6.38652 6.40210 6.53069 6.60243 6.75052 6.85687 6.87968 6.95857 7.24138 7.35707 7.47922 7.54875 7.85988 8.11532 8.37739 8.59337 8.84539 9.42594 10.93995 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.002412 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.675452 B =11607.262425 C =12262.854553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.538 3.462 4 O -0.492 6.492 5 C -0.043 4.043 6 C -0.090 4.090 7 C 0.059 3.941 8 N -0.625 5.625 9 C 0.508 3.492 10 O -0.499 6.499 11 C 0.497 3.503 12 O -0.540 6.540 13 N -0.548 5.548 14 C 0.081 3.919 15 C 0.224 3.776 16 H 0.063 0.937 17 C -0.150 4.150 18 C -0.529 4.529 19 H 0.081 0.919 20 C 0.080 3.920 21 N -0.890 5.890 22 Si 0.871 3.129 23 H -0.271 1.271 24 H -0.260 1.260 25 H -0.286 1.286 26 C 0.005 3.995 27 N -0.416 5.416 28 C 0.071 3.929 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.179 0.821 33 H 0.422 0.578 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.267 0.733 41 H 0.178 0.822 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 -23.319 -6.631 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.383 3.617 4 O -0.379 6.379 5 C -0.153 4.153 6 C -0.118 4.118 7 C -0.041 4.041 8 N -0.271 5.271 9 C 0.291 3.709 10 O -0.373 6.373 11 C 0.278 3.722 12 O -0.420 6.420 13 N -0.278 5.278 14 C -0.062 4.062 15 C 0.124 3.876 16 H 0.081 0.919 17 C -0.209 4.209 18 C -0.567 4.567 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.526 5.526 22 Si 0.698 3.302 23 H -0.196 1.196 24 H -0.185 1.185 25 H -0.212 1.212 26 C -0.133 4.133 27 N -0.092 5.092 28 C -0.070 4.070 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.196 0.804 33 H 0.259 0.741 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.195 0.805 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.027 -23.074 -6.560 28.307 hybrid contribution 1.128 -0.347 -0.382 1.240 sum -13.900 -23.422 -6.942 28.106 Atomic orbital electron populations 1.23281 0.75815 1.03661 1.02937 1.86574 1.23842 1.32786 1.85109 1.19721 0.86840 0.81717 0.73377 1.90940 1.65317 1.35684 1.45985 1.19290 0.86706 0.87485 1.21792 1.21783 0.89926 0.98424 1.01679 1.16847 0.87766 0.88925 1.10559 1.42558 1.08504 1.04764 1.71269 1.20666 0.90393 0.82603 0.77208 1.90654 1.24987 1.75460 1.46236 1.19652 0.88150 0.83962 0.80424 1.90708 1.24406 1.75682 1.51161 1.48125 1.11080 1.04356 1.64229 1.21994 0.82155 1.00895 1.01145 1.19438 0.84846 0.87571 0.95772 0.91883 1.22304 1.01978 0.99781 0.96805 1.21086 0.97142 1.33068 1.05355 0.90055 1.24896 0.98598 0.94133 0.94755 1.69883 1.24967 1.32149 1.25638 0.86975 0.82951 0.78583 0.81714 1.19650 1.18483 1.21249 1.21425 0.87662 0.93002 1.11217 1.43711 1.04989 1.06406 1.54141 1.22272 1.03346 0.77375 1.04006 0.88026 0.91653 0.91681 0.80418 0.74095 0.92975 0.90364 0.90230 0.92888 0.91966 0.95406 0.92316 0.80454 0.90365 0.89416 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.37 -3.24 7.98 -41.04 -0.33 -3.57 16 3 C 0.54 6.59 7.92 34.05 0.27 6.86 16 4 O -0.49 -7.48 16.68 -19.36 -0.32 -7.81 16 5 C -0.04 -0.52 6.88 -82.01 -0.56 -1.09 16 6 C -0.09 -1.29 9.43 -38.93 -0.37 -1.66 16 7 C 0.06 0.76 6.90 -83.96 -0.58 0.18 16 8 N -0.62 -8.67 5.45 -10.48 -0.06 -8.72 16 9 C 0.51 8.75 7.67 -11.65 -0.09 8.66 16 10 O -0.50 -8.98 10.55 5.45 0.06 -8.92 16 11 C 0.50 10.11 7.72 -11.65 -0.09 10.02 16 12 O -0.54 -11.95 15.83 5.48 0.09 -11.86 16 13 N -0.55 -11.74 2.75 -175.83 -0.48 -12.22 16 14 C 0.08 1.52 8.08 59.85 0.48 2.00 16 15 C 0.22 5.36 2.18 -69.09 -0.15 5.21 16 16 H 0.06 1.61 4.68 -51.93 -0.24 1.37 16 17 C -0.15 -3.17 8.89 37.16 0.33 -2.84 16 18 C -0.53 -14.43 8.65 -34.44 -0.30 -14.73 16 19 H 0.08 2.38 6.99 -52.49 -0.37 2.01 16 20 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 21 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 22 Si 0.87 21.37 26.19 -169.99 -4.45 16.91 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.26 -6.06 6.14 56.52 0.35 -5.71 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.00 0.04 11.42 -16.61 -0.19 -0.15 16 27 N -0.42 -3.81 3.17 -120.04 -0.38 -4.19 16 28 C 0.07 0.35 10.56 59.85 0.63 0.98 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 2.94 5.97 -52.48 -0.31 2.62 16 33 H 0.42 5.04 8.31 -40.82 -0.34 4.70 16 34 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.08 1.43 6.00 -51.93 -0.31 1.12 16 36 H 0.08 1.54 6.72 -51.93 -0.35 1.19 16 37 H 0.05 1.04 7.51 -51.93 -0.39 0.65 16 38 H 0.06 1.33 6.73 -51.93 -0.35 0.98 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.10 0.50 6.14 -51.93 -0.32 0.18 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -34.80 367.59 -4.76 -39.56 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.55 Total: 4.08 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 0.36 Total: 16.90 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.15 Total: -50.84 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.51 Total: -32.16 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.45 Total: 16.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.80 -4.76 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275968797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.303 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds