Wall clock time and date at job start Tue Mar 31 2020 21:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34901 * 116.99900 * 2 1 4 4 O 1.21628 * 120.00058 * 0.02562 * 3 2 1 5 5 C 1.46481 * 119.99831 * 179.97438 * 3 2 1 6 6 C 1.37969 * 126.16940 * 180.02562 * 5 3 2 7 7 C 1.40229 * 107.09232 * 179.97438 * 6 5 3 8 8 N 1.40407 * 126.13265 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00359 * 0.02562 * 8 7 6 10 10 O 1.21408 * 119.99535 * 0.02562 * 9 8 7 11 11 C 1.49316 * 120.00220 * 179.97438 * 9 8 7 12 12 O 1.21368 * 119.99993 * 5.64423 * 11 9 8 13 13 N 1.34775 * 120.00020 * 185.64718 * 11 9 8 14 14 C 1.46498 * 119.99890 * 5.69877 * 13 11 9 15 15 C 1.46497 * 120.00031 * 185.70176 * 13 11 9 16 16 H 1.08994 * 109.47344 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47170 * 119.99943 * 15 13 11 18 18 C 1.50701 * 109.47124 * 239.99704 * 15 13 11 19 19 H 1.07998 * 120.00240 * 334.90325 * 18 15 13 20 20 C 1.37875 * 120.00146 * 154.89871 * 18 15 13 21 21 N 1.31518 * 120.00249 * 174.94432 * 20 18 15 22 22 Si 1.86805 * 119.99976 * 354.95362 * 20 18 15 23 23 H 1.48500 * 109.46582 * 275.02852 * 22 20 18 24 24 H 1.48499 * 109.47097 * 35.02293 * 22 20 18 25 25 H 1.48495 * 109.47330 * 155.02625 * 22 20 18 26 26 C 1.36056 * 107.73155 * 0.24428 * 7 6 5 27 27 N 1.35740 * 108.78497 * 359.60353 * 26 7 6 28 28 C 1.46499 * 125.63866 * 180.15812 * 27 26 7 29 29 H 1.09004 * 109.47162 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47490 * 299.99680 * 1 2 3 31 31 H 1.09006 * 109.47523 * 59.99751 * 1 2 3 32 32 H 1.08005 * 126.45016 * 359.94818 * 6 5 3 33 33 H 0.96998 * 119.99965 * 180.02562 * 8 7 6 34 34 H 1.08999 * 109.47548 * 275.68720 * 14 13 11 35 35 H 1.09000 * 109.47251 * 35.68604 * 14 13 11 36 36 H 1.09003 * 109.46939 * 155.68794 * 14 13 11 37 37 H 1.09001 * 109.47547 * 55.01918 * 17 15 13 38 38 H 1.09004 * 109.47281 * 175.02143 * 17 15 13 39 39 H 1.09003 * 109.47351 * 295.02051 * 17 15 13 40 40 H 0.96995 * 119.99930 * 180.02562 * 21 20 18 41 41 H 1.07994 * 125.60980 * 179.72636 * 26 7 6 42 42 H 1.08995 * 109.47133 * 270.28539 * 28 27 26 43 43 H 1.09001 * 109.46816 * 30.28377 * 28 27 26 44 44 H 1.08998 * 109.47144 * 150.27817 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4019 2.2220 0.0005 5 6 3.5272 1.2786 0.0006 6 6 4.2820 2.4335 0.0011 7 6 5.6295 2.0451 0.0021 8 7 6.7391 2.9055 0.0025 9 6 6.5565 4.2409 0.0023 10 8 5.4325 4.6998 0.0023 11 6 7.7365 5.1558 0.0032 12 8 8.8571 4.7010 -0.0993 13 7 7.5572 6.4867 0.1179 14 6 6.2183 7.0267 0.3667 15 6 8.7013 7.3933 -0.0063 16 1 9.6062 6.8136 -0.1880 17 6 8.4669 8.3531 -1.1744 18 6 8.8579 8.1820 1.2682 19 1 8.0047 8.3470 1.9095 20 6 10.0905 8.6929 1.6157 21 7 10.2079 9.4641 2.6746 22 14 11.5936 8.2899 0.5824 23 1 12.1647 6.9924 1.0246 24 1 11.2014 8.1967 -0.8468 25 1 12.6096 9.3601 0.7482 26 6 5.6688 0.6852 -0.0034 27 7 4.3968 0.2111 0.0011 28 6 4.0127 -1.2026 0.0008 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 3.9059 3.4459 0.0005 33 1 7.6371 2.5388 0.0028 34 1 5.6871 7.1313 -0.5793 35 1 5.6684 6.3483 1.0191 36 1 6.3032 8.0022 0.8456 37 1 7.5168 8.8692 -1.0357 38 1 9.2750 9.0836 -1.2123 39 1 8.4418 7.7905 -2.1077 40 1 11.0750 9.8238 2.9188 41 1 6.5645 0.0820 -0.0083 42 1 3.9183 -1.5532 -1.0269 43 1 4.7760 -1.7865 0.5153 44 1 3.0583 -1.3199 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275968797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:05 Heat of formation + Delta-G solvation = -102.779824 kcal Electronic energy + Delta-G solvation = -29066.675213 eV Core-core repulsion = 24792.620039 eV Total energy + Delta-G solvation = -4274.055175 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.78491 -41.72743 -40.94702 -39.57431 -37.60476 -37.57821 -36.10260 -34.63687 -33.08500 -32.21139 -30.88534 -28.46933 -27.98781 -27.50509 -27.24177 -25.82229 -24.41039 -22.75761 -21.54772 -21.30677 -20.33321 -19.42984 -19.10169 -18.35903 -18.02795 -17.92480 -17.60010 -17.14226 -16.77740 -16.51545 -16.31891 -16.14348 -15.82019 -15.12418 -15.04153 -14.86273 -14.48813 -14.35363 -14.33065 -14.18754 -13.98884 -13.59527 -13.48708 -13.34248 -13.26420 -13.10082 -13.04033 -12.84155 -12.63979 -12.34893 -12.22307 -11.91048 -11.88541 -11.78378 -11.73263 -11.32744 -10.77716 -10.35194 -9.65530 -9.56708 -8.84045 -8.34482 -6.40588 0.05330 0.26115 1.21604 1.34502 1.38526 1.46342 1.49162 1.51992 1.86132 1.94982 2.31063 2.32246 2.61381 3.04149 3.33551 3.66018 3.92468 4.07558 4.26419 4.32479 4.32909 4.38572 4.44225 4.51763 4.62610 4.64190 4.67838 4.72840 4.77069 4.78979 4.88122 4.90301 5.06865 5.12916 5.17906 5.25798 5.47963 5.49593 5.61693 5.75837 5.98970 6.11144 6.22956 6.47301 6.60498 6.63582 6.77173 6.98997 7.26051 8.80876 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.002412 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.675452 B =11607.262425 C =12262.854553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.541 3.459 4 O -0.534 6.534 5 C -0.058 4.058 6 C -0.120 4.120 7 C 0.022 3.978 8 N -0.605 5.605 9 C 0.510 3.490 10 O -0.513 6.513 11 C 0.494 3.506 12 O -0.560 6.560 13 N -0.561 5.561 14 C 0.089 3.911 15 C 0.225 3.775 16 H 0.050 0.950 17 C -0.144 4.144 18 C -0.528 4.528 19 H 0.048 0.952 20 C 0.027 3.973 21 N -0.935 5.935 22 Si 0.928 3.072 23 H -0.277 1.277 24 H -0.239 1.239 25 H -0.279 1.279 26 C 0.046 3.954 27 N -0.402 5.402 28 C 0.061 3.939 29 H 0.142 0.858 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.146 0.854 33 H 0.432 0.568 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.049 0.951 40 H 0.269 0.731 41 H 0.227 0.773 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 -27.109 -8.187 31.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.388 3.612 4 O -0.425 6.425 5 C -0.169 4.169 6 C -0.148 4.148 7 C -0.077 4.077 8 N -0.251 5.251 9 C 0.292 3.708 10 O -0.389 6.389 11 C 0.277 3.723 12 O -0.441 6.441 13 N -0.291 5.291 14 C -0.053 4.053 15 C 0.124 3.876 16 H 0.068 0.932 17 C -0.203 4.203 18 C -0.566 4.566 19 H 0.067 0.933 20 C -0.172 4.172 21 N -0.574 5.574 22 Si 0.751 3.249 23 H -0.202 1.202 24 H -0.162 1.162 25 H -0.204 1.204 26 C -0.094 4.094 27 N -0.076 5.076 28 C -0.078 4.078 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.271 0.729 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.244 0.756 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.854 -26.949 -8.132 31.828 hybrid contribution 0.917 0.624 0.150 1.119 sum -13.938 -26.325 -7.983 30.838 Atomic orbital electron populations 1.23618 0.74105 1.06135 1.02554 1.86572 1.25402 1.30666 1.84296 1.19809 0.86955 0.82025 0.72440 1.90916 1.66190 1.37223 1.48140 1.19142 0.87055 0.88045 1.22666 1.21584 0.91484 0.98027 1.03710 1.17005 0.86562 0.90287 1.13802 1.42292 1.09549 1.03584 1.69683 1.19996 0.88944 0.83509 0.78351 1.90673 1.24829 1.75909 1.47523 1.20164 0.88957 0.83891 0.79335 1.90677 1.25520 1.76028 1.51836 1.48091 1.11170 1.04895 1.64922 1.21981 0.81205 1.00061 1.02025 1.19262 0.85535 0.87826 0.95006 0.93179 1.22184 1.02358 0.99255 0.96478 1.21283 0.96100 1.32986 1.06278 0.93337 1.25666 1.01577 0.94055 0.95941 1.70006 1.25816 1.33873 1.27713 0.86066 0.79431 0.78020 0.81340 1.20239 1.16167 1.20413 1.22088 0.88916 0.91772 1.06585 1.44078 1.04420 1.07485 1.51589 1.22680 1.04573 0.74815 1.05703 0.84024 0.92156 0.92095 0.83654 0.72898 0.91152 0.90190 0.91488 0.91991 0.92296 0.93162 0.92154 0.75640 0.88589 0.86059 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.35 -5.66 7.98 -58.15 -0.46 -6.12 16 3 C 0.54 13.14 7.92 69.97 0.55 13.70 16 4 O -0.53 -16.93 16.68 19.42 0.32 -16.60 16 5 C -0.06 -1.38 6.88 40.31 0.28 -1.10 16 6 C -0.12 -3.48 9.43 22.69 0.21 -3.27 16 7 C 0.02 0.53 6.90 37.74 0.26 0.79 16 8 N -0.60 -16.08 5.45 -305.42 -1.66 -17.74 16 9 C 0.51 17.58 7.67 87.23 0.67 18.25 16 10 O -0.51 -18.96 10.55 -3.43 -0.04 -18.99 16 11 C 0.49 20.09 7.72 87.23 0.67 20.76 16 12 O -0.56 -24.52 15.83 -3.30 -0.05 -24.58 16 13 N -0.56 -24.21 2.75 -828.55 -2.28 -26.49 16 14 C 0.09 3.42 8.08 127.77 1.03 4.45 16 15 C 0.23 10.76 2.18 44.24 0.10 10.85 16 16 H 0.05 2.53 4.68 -2.39 -0.01 2.52 16 17 C -0.14 -5.92 8.89 71.98 0.64 -5.28 16 18 C -0.53 -29.56 8.65 25.60 0.22 -29.34 16 19 H 0.05 2.97 6.99 -2.91 -0.02 2.95 16 20 C 0.03 1.56 5.47 84.65 0.46 2.02 16 21 N -0.94 -57.19 13.96 21.45 0.30 -56.89 16 22 Si 0.93 44.10 26.19 68.60 1.80 45.89 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.24 -10.40 6.14 99.48 0.61 -9.79 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.05 0.67 11.42 83.58 0.95 1.63 16 27 N -0.40 -6.00 3.17 -533.69 -1.69 -7.69 16 28 C 0.06 0.33 10.56 127.77 1.35 1.67 16 29 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.15 5.16 5.97 -2.91 -0.02 5.15 16 33 H 0.43 9.48 8.31 -92.71 -0.77 8.71 16 34 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 35 H 0.08 3.03 6.00 -2.39 -0.01 3.01 16 36 H 0.07 2.70 6.72 -2.39 -0.02 2.68 16 37 H 0.06 2.39 7.51 -2.39 -0.02 2.37 16 38 H 0.06 2.43 6.73 -2.39 -0.02 2.42 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.23 1.04 8.06 -2.91 -0.02 1.01 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 44 H 0.10 0.61 6.14 -2.39 -0.01 0.60 16 Total: -1.00 -79.91 367.59 5.03 -74.88 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.20 Total: 17.68 kcal Atomic # 6 Polarization: 28.04 SS G_CDS: 8.60 Total: 36.65 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -5.34 Total: -108.81 kcal Atomic # 8 Polarization: -66.06 SS G_CDS: -0.23 Total: -66.29 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.80 Total: 45.89 kcal Total: -79.91 5.03 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275968797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.900 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds