Wall clock time and date at job start Tue Mar 31 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46776 * 2 1 4 4 C 1.46500 * 119.99613 * 269.99693 * 3 2 1 5 5 C 1.50707 * 109.47341 * 270.00011 * 4 3 2 6 6 H 1.07998 * 119.99455 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00069 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00313 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47007 * 90.00054 * 9 7 5 11 11 H 1.48501 * 109.47303 * 209.99907 * 9 7 5 12 12 H 1.48498 * 109.47462 * 330.00391 * 9 7 5 13 13 C 1.34774 * 120.00465 * 89.99675 * 3 2 1 14 14 O 1.21276 * 119.99953 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99481 * 0.02562 * 13 3 2 16 16 N 1.46509 * 109.46842 * 179.97438 * 15 13 3 17 17 C 1.36066 * 126.34983 * 270.10693 * 16 15 13 18 18 C 1.50697 * 124.95944 * 0.05859 * 17 16 15 19 19 N 1.30100 * 110.09007 * 180.30108 * 17 16 15 20 20 C 1.35834 * 109.65270 * 359.75602 * 19 17 16 21 21 C 1.39782 * 133.50389 * 180.02562 * 20 19 17 22 22 C 1.37732 * 119.78201 * 179.97438 * 21 20 19 23 23 F 1.35103 * 119.77046 * 180.02562 * 22 21 20 24 24 C 1.39176 * 120.45579 * 0.02562 * 22 21 20 25 25 F 1.35103 * 119.80927 * 179.97438 * 24 22 21 26 26 C 1.37979 * 120.38518 * 359.97438 * 24 22 21 27 27 C 1.38153 * 126.35291 * 89.99340 * 16 15 13 28 28 H 1.08997 * 109.47328 * 60.00467 * 1 2 3 29 29 H 1.09005 * 109.46462 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47265 * 299.99937 * 1 2 3 31 31 H 1.08997 * 109.47745 * 239.99917 * 2 1 3 32 32 H 1.08997 * 109.47328 * 119.99533 * 2 1 3 33 33 H 1.08999 * 109.47373 * 29.99878 * 4 3 2 34 34 H 1.08999 * 109.47224 * 150.00090 * 4 3 2 35 35 H 0.96996 * 120.00715 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47370 * 59.99804 * 15 13 3 37 37 H 1.08999 * 109.47345 * 299.99457 * 15 13 3 38 38 H 1.09000 * 109.47019 * 270.30854 * 18 17 16 39 39 H 1.09004 * 109.47229 * 30.30716 * 18 17 16 40 40 H 1.08998 * 109.47872 * 150.30607 * 18 17 16 41 41 H 1.08007 * 120.10950 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.08301 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6182 9 14 5.9135 2.0967 -3.4169 10 1 5.9776 0.8753 -4.2590 11 1 6.3920 3.2639 -4.2005 12 1 6.7736 1.9181 -2.2196 13 6 2.2428 2.0168 1.1671 14 8 2.6474 3.1600 1.1670 15 6 1.9921 1.3061 2.4722 16 7 2.3099 2.2037 3.5858 17 6 3.5185 2.3340 4.1970 18 6 4.7607 1.5652 3.8268 19 7 3.4441 3.2154 5.1510 20 6 2.1827 3.7154 5.2137 21 6 1.5639 4.6660 6.0306 22 6 0.2330 4.9667 5.8431 23 9 -0.3647 5.8859 6.6325 24 6 -0.5004 4.3301 4.8462 25 9 -1.8054 4.6347 4.6741 26 6 0.0974 3.3897 4.0325 27 6 1.4384 3.0763 4.2086 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0954 3.1410 -1.1385 35 1 3.6750 3.5160 -4.4441 36 1 2.6227 0.4189 2.5298 37 1 0.9443 1.0116 2.5302 38 1 4.7995 0.6393 4.4008 39 1 4.7400 1.3321 2.7622 40 1 5.6411 2.1679 4.0496 41 1 2.1279 5.1637 6.8057 42 1 -0.4764 2.8985 3.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280578574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:05 Heat of formation + Delta-G solvation = -47.578779 kcal Electronic energy + Delta-G solvation = -29282.801296 eV Core-core repulsion = 24900.052302 eV Total energy + Delta-G solvation = -4382.748993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.48306 -48.55970 -42.41285 -39.33984 -37.10558 -35.62343 -34.30494 -32.91797 -31.33525 -30.65749 -30.33362 -28.56598 -27.44614 -26.55796 -23.29371 -23.16948 -22.76100 -22.39753 -20.45770 -18.91330 -18.36996 -17.85885 -17.11473 -17.08728 -16.55918 -16.34577 -16.17389 -15.48427 -15.29981 -15.09029 -14.98865 -14.81596 -14.32739 -14.18307 -13.74929 -13.68041 -13.66678 -13.34281 -13.00043 -12.96444 -12.82839 -12.52807 -12.25338 -12.12888 -11.84459 -11.77724 -11.35704 -11.10931 -11.04518 -10.93536 -10.74417 -10.68394 -10.27340 -10.15594 -9.80473 -9.31505 -8.55985 -8.35129 -8.23397 -7.94458 -6.16912 -4.22897 0.52120 0.99197 2.20865 2.53248 2.96142 3.21344 3.29376 3.31723 3.41484 3.56134 3.64545 3.94100 4.10301 4.32759 4.37896 4.48389 4.62768 4.76038 4.85358 4.92448 5.03595 5.09731 5.18181 5.26079 5.32801 5.37509 5.46010 5.51205 5.57264 5.65640 5.77021 5.78948 6.01354 6.06754 6.22573 6.25976 6.57952 6.76837 6.91955 7.23859 7.30788 7.69473 7.77340 8.06441 8.09881 8.63544 8.82533 9.42782 10.91305 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003249 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.481501 B = 8614.693514 C = 9115.757287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.485 3.515 14 O -0.519 6.519 15 C 0.084 3.916 16 N -0.464 5.464 17 C 0.316 3.684 18 C -0.084 4.084 19 N -0.493 5.493 20 C 0.071 3.929 21 C -0.074 4.074 22 C 0.060 3.940 23 F -0.129 7.129 24 C 0.080 3.920 25 F -0.126 7.126 26 C -0.109 4.109 27 C 0.073 3.927 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.152 0.848 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -7.581 15.833 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.129 3.871 5 C -0.570 4.570 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.268 3.732 14 O -0.395 6.395 15 C -0.042 4.042 16 N -0.153 5.153 17 C 0.052 3.948 18 C -0.142 4.142 19 N -0.213 5.213 20 C -0.048 4.048 21 C -0.094 4.094 22 C 0.038 3.962 23 F -0.107 7.107 24 C 0.059 3.941 25 F -0.105 7.105 26 C -0.130 4.130 27 C -0.037 4.037 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.170 0.830 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.692 -6.649 16.073 18.016 hybrid contribution -0.155 -0.204 -1.101 1.131 sum -4.848 -6.852 14.972 17.164 Atomic orbital electron populations 1.22240 0.96448 1.01811 1.02455 1.21520 0.93773 0.83913 1.03055 1.48303 1.63133 1.13314 1.07441 1.19339 0.96585 0.93630 0.77587 1.21359 0.96727 1.32406 1.06479 0.92429 1.24934 0.97954 0.94750 0.96343 1.69918 1.35805 1.33040 1.14295 0.86489 0.84446 0.77786 0.78663 1.20562 1.21012 1.19845 1.20332 0.80229 0.87548 0.85049 1.90775 1.44781 1.17409 1.86549 1.21945 1.04748 0.92648 0.84892 1.44843 1.09152 1.33399 1.27895 1.23721 0.87191 0.94696 0.89240 1.20489 0.91395 0.99271 1.03023 1.70472 1.17796 1.12295 1.20726 1.18586 0.90687 0.98849 0.96719 1.19871 0.91620 0.97565 1.00381 1.17022 0.91499 0.93916 0.93768 1.91519 1.83449 1.63556 1.72210 1.16943 0.79275 0.99645 0.98284 1.91528 1.32044 1.92073 1.94828 1.19552 0.92339 0.99866 1.01260 1.18311 0.92341 0.95976 0.97122 0.91678 0.91745 0.93290 0.89258 0.91822 0.94701 0.93859 0.92551 0.86023 0.86625 0.89055 0.89552 0.88053 0.83000 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 2 C 0.10 1.30 5.93 -4.04 -0.02 1.28 16 3 N -0.59 -10.78 2.46 -175.06 -0.43 -11.21 16 4 C 0.25 5.97 5.16 -5.19 -0.03 5.94 16 5 C -0.53 -14.05 9.39 -34.44 -0.32 -14.38 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 9 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.48 8.76 7.74 -10.99 -0.09 8.68 16 14 O -0.52 -12.22 16.01 5.56 0.09 -12.13 16 15 C 0.08 1.02 4.76 -5.19 -0.02 1.00 16 16 N -0.46 -6.59 2.30 -112.41 -0.26 -6.85 16 17 C 0.32 4.47 7.86 -154.81 -1.22 3.26 16 18 C -0.08 -0.87 9.95 36.00 0.36 -0.51 16 19 N -0.49 -7.70 11.27 -8.22 -0.09 -7.80 16 20 C 0.07 1.08 7.23 -84.68 -0.61 0.47 16 21 C -0.07 -0.98 10.07 -39.19 -0.39 -1.37 16 22 C 0.06 0.81 7.29 -39.42 -0.29 0.52 16 23 F -0.13 -1.72 17.16 2.25 0.04 -1.68 16 24 C 0.08 1.09 7.30 -39.33 -0.29 0.81 16 25 F -0.13 -1.74 17.17 2.25 0.04 -1.70 16 26 C -0.11 -1.46 10.01 -39.46 -0.40 -1.86 16 27 C 0.07 1.08 6.87 -83.96 -0.58 0.50 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.48 7.22 -51.93 -0.38 0.11 16 31 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 32 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 33 H 0.04 0.85 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.12 1.08 6.89 -51.93 -0.36 0.72 16 37 H 0.12 1.09 7.19 -51.93 -0.37 0.72 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -34.00 369.53 -8.09 -42.09 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.14 Total: -1.83 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.61 Total: 4.49 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.04 Total: -50.68 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.00 -8.09 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280578574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.492 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds