Wall clock time and date at job start Tue Mar 31 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46776 * 2 1 4 4 C 1.46500 * 119.99613 * 269.99693 * 3 2 1 5 5 C 1.50707 * 109.47341 * 270.00011 * 4 3 2 6 6 H 1.07998 * 119.99455 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00069 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00313 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99934 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47007 * 90.00054 * 9 7 5 11 11 H 1.48501 * 109.47303 * 209.99907 * 9 7 5 12 12 H 1.48498 * 109.47462 * 330.00391 * 9 7 5 13 13 C 1.34774 * 120.00465 * 89.99675 * 3 2 1 14 14 O 1.21276 * 119.99953 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99481 * 0.02562 * 13 3 2 16 16 N 1.46509 * 109.46842 * 179.97438 * 15 13 3 17 17 C 1.36066 * 126.34983 * 270.10693 * 16 15 13 18 18 C 1.50697 * 124.95944 * 0.05859 * 17 16 15 19 19 N 1.30100 * 110.09007 * 180.30108 * 17 16 15 20 20 C 1.35834 * 109.65270 * 359.75602 * 19 17 16 21 21 C 1.39782 * 133.50389 * 180.02562 * 20 19 17 22 22 C 1.37732 * 119.78201 * 179.97438 * 21 20 19 23 23 F 1.35103 * 119.77046 * 180.02562 * 22 21 20 24 24 C 1.39176 * 120.45579 * 0.02562 * 22 21 20 25 25 F 1.35103 * 119.80927 * 179.97438 * 24 22 21 26 26 C 1.37979 * 120.38518 * 359.97438 * 24 22 21 27 27 C 1.38153 * 126.35291 * 89.99340 * 16 15 13 28 28 H 1.08997 * 109.47328 * 60.00467 * 1 2 3 29 29 H 1.09005 * 109.46462 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47265 * 299.99937 * 1 2 3 31 31 H 1.08997 * 109.47745 * 239.99917 * 2 1 3 32 32 H 1.08997 * 109.47328 * 119.99533 * 2 1 3 33 33 H 1.08999 * 109.47373 * 29.99878 * 4 3 2 34 34 H 1.08999 * 109.47224 * 150.00090 * 4 3 2 35 35 H 0.96996 * 120.00715 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47370 * 59.99804 * 15 13 3 37 37 H 1.08999 * 109.47345 * 299.99457 * 15 13 3 38 38 H 1.09000 * 109.47019 * 270.30854 * 18 17 16 39 39 H 1.09004 * 109.47229 * 30.30716 * 18 17 16 40 40 H 1.08998 * 109.47872 * 150.30607 * 18 17 16 41 41 H 1.08007 * 120.10950 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.08301 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7038 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6182 9 14 5.9135 2.0967 -3.4169 10 1 5.9776 0.8753 -4.2590 11 1 6.3920 3.2639 -4.2005 12 1 6.7736 1.9181 -2.2196 13 6 2.2428 2.0168 1.1671 14 8 2.6474 3.1600 1.1670 15 6 1.9921 1.3061 2.4722 16 7 2.3099 2.2037 3.5858 17 6 3.5185 2.3340 4.1970 18 6 4.7607 1.5652 3.8268 19 7 3.4441 3.2154 5.1510 20 6 2.1827 3.7154 5.2137 21 6 1.5639 4.6660 6.0306 22 6 0.2330 4.9667 5.8431 23 9 -0.3647 5.8859 6.6325 24 6 -0.5004 4.3301 4.8462 25 9 -1.8054 4.6347 4.6741 26 6 0.0974 3.3897 4.0325 27 6 1.4384 3.0763 4.2086 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0954 3.1410 -1.1385 35 1 3.6750 3.5160 -4.4441 36 1 2.6227 0.4189 2.5298 37 1 0.9443 1.0116 2.5302 38 1 4.7995 0.6393 4.4008 39 1 4.7400 1.3321 2.7622 40 1 5.6411 2.1679 4.0496 41 1 2.1279 5.1637 6.8057 42 1 -0.4764 2.8985 3.2607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280578574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:04 Heat of formation + Delta-G solvation = -67.461702 kcal Electronic energy + Delta-G solvation = -29283.663484 eV Core-core repulsion = 24900.052302 eV Total energy + Delta-G solvation = -4383.611182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.55100 -49.62842 -43.46199 -40.75943 -38.15765 -37.07366 -35.46608 -34.83472 -32.27737 -31.80363 -31.54558 -29.92986 -28.46965 -28.08202 -25.00294 -24.25862 -23.85903 -23.51397 -21.58639 -20.19828 -19.43085 -18.95101 -18.68482 -18.26408 -18.13098 -17.47221 -17.39174 -16.72293 -16.60821 -16.36599 -16.12393 -16.05937 -15.77296 -15.29622 -14.83752 -14.79216 -14.68605 -14.49039 -14.41261 -14.00632 -13.81195 -13.67325 -13.43179 -13.33457 -13.23180 -13.05257 -12.80722 -12.71184 -12.50889 -12.20116 -12.11140 -11.90305 -11.82821 -11.72958 -11.23380 -10.75315 -10.65075 -9.53147 -9.42760 -9.29976 -8.23717 -6.38276 -0.51480 -0.08573 1.15739 1.37127 1.40242 1.49537 1.51112 1.62459 2.23444 2.34286 2.41153 2.57888 2.92951 3.07001 3.07365 3.39662 3.46198 3.55339 3.79993 3.89248 3.96887 4.06756 4.18332 4.28667 4.41078 4.51125 4.59256 4.62817 4.64274 4.65644 4.90411 4.97532 4.98204 5.03401 5.05249 5.18890 5.20310 5.40094 5.53752 5.54435 5.78358 5.88853 6.03269 6.62336 6.64694 6.73218 7.22658 7.37262 8.83628 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.013753 B = 0.003249 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.481501 B = 8614.693514 C = 9115.757287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.480 3.520 14 O -0.586 6.586 15 C 0.095 3.905 16 N -0.469 5.469 17 C 0.311 3.689 18 C -0.082 4.082 19 N -0.519 5.519 20 C 0.050 3.950 21 C -0.073 4.073 22 C 0.058 3.942 23 F -0.129 7.129 24 C 0.074 3.926 25 F -0.128 7.128 26 C -0.107 4.107 27 C 0.057 3.943 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.023 0.977 34 H -0.009 1.009 35 H 0.266 0.734 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.169 0.831 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -10.413 17.096 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.266 3.734 14 O -0.466 6.466 15 C -0.030 4.030 16 N -0.157 5.157 17 C 0.046 3.954 18 C -0.140 4.140 19 N -0.240 5.240 20 C -0.069 4.069 21 C -0.093 4.093 22 C 0.036 3.964 23 F -0.108 7.108 24 C 0.052 3.948 25 F -0.107 7.107 26 C -0.129 4.129 27 C -0.053 4.053 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.041 0.959 34 H 0.009 0.991 35 H 0.074 0.926 36 H 0.184 0.816 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.187 0.813 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.237 -9.543 17.357 20.255 hybrid contribution -0.342 0.697 -1.482 1.673 sum -4.579 -8.846 15.875 18.741 Atomic orbital electron populations 1.22203 0.94695 1.03793 1.01719 1.21915 0.95216 0.80778 1.04939 1.48262 1.63117 1.15282 1.05724 1.18702 0.95510 0.91290 0.80275 1.21709 0.97751 1.31890 1.06397 0.92046 1.25861 1.02252 0.94519 0.96624 1.70054 1.37873 1.34316 1.14823 0.85442 0.79182 0.77985 0.78395 1.18791 1.21377 1.19200 1.21340 0.78441 0.86921 0.86662 1.90747 1.47661 1.20515 1.87696 1.22119 1.07970 0.92342 0.80540 1.44984 1.09064 1.33631 1.28031 1.24451 0.88089 0.94259 0.88617 1.20670 0.89645 1.00482 1.03182 1.70451 1.18114 1.13279 1.22114 1.18917 0.90985 0.99507 0.97463 1.20031 0.91592 0.97170 1.00488 1.17064 0.91622 0.93925 0.93791 1.91515 1.83461 1.63592 1.72230 1.17042 0.79247 0.99940 0.98557 1.91520 1.32175 1.92128 1.94871 1.19701 0.92103 0.99700 1.01370 1.18552 0.92897 0.96451 0.97411 0.94608 0.88315 0.91917 0.90431 0.86874 0.95896 0.99074 0.92562 0.81585 0.83019 0.85192 0.90051 0.88065 0.81307 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 10.24 71.98 0.74 -2.35 16 2 C 0.09 2.13 5.93 86.38 0.51 2.64 16 3 N -0.59 -21.28 2.46 -826.15 -2.03 -23.31 16 4 C 0.26 13.21 5.16 85.64 0.44 13.65 16 5 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 6 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -55.02 13.29 21.44 0.28 -54.73 16 9 Si 0.97 42.94 29.54 68.60 2.03 44.97 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.48 16.87 7.74 87.66 0.68 17.55 16 14 O -0.59 -28.26 16.01 -3.02 -0.05 -28.31 16 15 C 0.09 1.98 4.76 85.63 0.41 2.39 16 16 N -0.47 -12.30 2.30 -509.56 -1.17 -13.47 16 17 C 0.31 8.25 7.86 137.91 1.08 9.33 16 18 C -0.08 -1.48 9.95 71.23 0.71 -0.77 16 19 N -0.52 -15.80 11.27 -179.92 -2.03 -17.83 16 20 C 0.05 1.50 7.23 39.44 0.28 1.78 16 21 C -0.07 -1.89 10.07 22.52 0.23 -1.66 16 22 C 0.06 1.53 7.29 22.38 0.16 1.70 16 23 F -0.13 -3.38 17.16 44.97 0.77 -2.61 16 24 C 0.07 1.96 7.30 22.43 0.16 2.13 16 25 F -0.13 -3.44 17.17 44.97 0.77 -2.67 16 26 C -0.11 -2.76 10.01 22.35 0.22 -2.54 16 27 C 0.06 1.63 6.87 38.83 0.27 1.89 16 28 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.00 7.22 -2.39 -0.02 0.98 16 31 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.11 1.49 6.44 -2.39 -0.02 1.47 16 33 H 0.02 1.18 8.07 -2.39 -0.02 1.17 16 34 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.17 2.01 6.89 -2.39 -0.02 1.99 16 37 H 0.15 2.11 7.19 -2.39 -0.02 2.10 16 38 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.58 7.67 -2.38 -0.02 1.56 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -79.56 369.53 6.24 -73.32 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.06 Total: 6.83 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.60 Total: 17.81 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -4.94 Total: -109.35 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.05 Total: -28.31 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.54 Total: -5.28 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -79.56 6.24 -73.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280578574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.858 kcal (2) G-P(sol) polarization free energy of solvation -79.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds