Wall clock time and date at job start Tue Mar 31 2020 22:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47057 * 2 1 4 4 C 1.36935 * 119.99876 * 276.12132 * 3 2 1 5 5 H 1.07991 * 120.00347 * 27.42586 * 4 3 2 6 6 C 1.38808 * 119.99668 * 207.41489 * 4 3 2 7 7 N 1.31625 * 120.00185 * 21.34360 * 6 4 3 8 8 Si 1.86807 * 120.00156 * 201.33887 * 6 4 3 9 9 H 1.48502 * 109.46879 * 94.99371 * 8 6 4 10 10 H 1.48499 * 109.47090 * 214.99299 * 8 6 4 11 11 H 1.48496 * 109.46940 * 334.99580 * 8 6 4 12 12 C 1.46507 * 119.99656 * 96.11808 * 3 2 1 13 13 H 1.09002 * 109.46788 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47250 * 300.00304 * 12 3 2 15 15 C 1.50701 * 109.46925 * 60.00242 * 12 3 2 16 16 O 1.21289 * 119.99768 * 359.97438 * 15 12 3 17 17 N 1.34769 * 119.99919 * 179.97438 * 15 12 3 18 18 C 1.40124 * 120.00330 * 184.20181 * 17 15 12 19 19 C 1.38722 * 120.08538 * 332.80725 * 18 17 15 20 20 C 1.38204 * 119.98414 * 179.76474 * 19 18 17 21 21 N 1.48015 * 119.91668 * 180.20667 * 20 19 18 22 22 O 1.21804 * 119.99642 * 180.27312 * 21 20 19 23 23 O 1.21798 * 120.00139 * 0.27737 * 21 20 19 24 24 C 1.38273 * 120.15930 * 0.48912 * 20 19 18 25 25 C 1.38247 * 120.18274 * 359.76151 * 24 20 19 26 26 C 1.38543 * 120.01375 * 0.02562 * 25 24 20 27 27 O 1.35973 * 120.08259 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99995 * 0.02562 * 27 26 25 29 29 H 1.09006 * 109.46786 * 299.99633 * 1 2 3 30 30 H 1.08999 * 109.47195 * 59.99841 * 1 2 3 31 31 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46659 * 240.00161 * 2 1 3 33 33 H 1.08999 * 109.47195 * 120.00158 * 2 1 3 34 34 H 0.97002 * 120.00060 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46991 * 59.99926 * 14 12 3 36 36 H 1.08991 * 109.46755 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.46995 * 299.99937 * 14 12 3 38 38 H 0.97009 * 119.99860 * 4.20350 * 17 15 12 39 39 H 1.08000 * 120.01103 * 359.97438 * 19 18 17 40 40 H 1.08007 * 119.90900 * 179.74823 * 24 20 19 41 41 H 1.08002 * 119.99348 * 179.97438 * 25 24 20 42 42 H 1.09002 * 109.47200 * 300.00076 * 28 27 26 43 43 H 1.09003 * 109.47182 * 59.99825 * 28 27 26 44 44 H 1.09003 * 109.47133 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1274 2.0689 -1.1791 5 1 1.4852 1.8198 -2.0109 6 6 3.0632 3.0863 -1.3052 7 7 4.1030 3.1277 -0.4993 8 14 2.8469 4.3968 -2.6188 9 1 2.1652 5.5783 -2.0318 10 1 4.1779 4.8010 -3.1387 11 1 2.0257 3.8529 -3.7301 12 6 2.3900 2.0267 1.2616 13 1 2.7268 3.0443 1.0636 14 6 1.1764 2.0637 2.1925 15 6 3.5016 1.2476 1.9161 16 8 3.9398 0.2509 1.3816 17 7 4.0086 1.6582 3.0953 18 6 5.1002 0.9858 3.6609 19 6 5.3144 -0.3549 3.3764 20 6 6.3944 -1.0148 3.9316 21 7 6.6241 -2.4442 3.6234 22 8 7.5726 -3.0285 4.1158 23 8 5.8647 -3.0360 2.8774 24 6 7.2574 -0.3445 4.7788 25 6 7.0474 0.9903 5.0711 26 6 5.9696 1.6602 4.5152 27 8 5.7614 2.9729 4.8020 28 6 6.6941 3.5999 5.6845 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.7571 3.8385 -0.5877 35 1 0.8392 1.0462 2.3905 36 1 1.4528 2.5443 3.1308 37 1 0.3724 2.6272 1.7191 38 1 3.6179 2.4193 3.5526 39 1 4.6393 -0.8821 2.7186 40 1 8.0978 -0.8653 5.2136 41 1 7.7232 1.5108 5.7335 42 1 6.6875 3.0855 6.6455 43 1 7.6936 3.5495 5.2524 44 1 6.4132 4.6432 5.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299328874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:08 Heat of formation + Delta-G solvation = -13.964582 kcal Electronic energy + Delta-G solvation = -30424.612875 eV Core-core repulsion = 26154.409018 eV Total energy + Delta-G solvation = -4270.203857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.96978 -40.80506 -39.26170 -37.61190 -36.32123 -35.95922 -34.41471 -31.99324 -31.39038 -31.14994 -29.58512 -28.27829 -27.95298 -25.81992 -24.52811 -23.79577 -22.59646 -22.03441 -20.91173 -19.51582 -19.23202 -18.42125 -18.38711 -17.29512 -17.24094 -16.65574 -16.20441 -16.14959 -15.76467 -14.90135 -14.58874 -14.41328 -14.00290 -13.79027 -13.64708 -13.56670 -13.34745 -12.99463 -12.49564 -12.41617 -12.07828 -11.88220 -11.67587 -11.58968 -11.51143 -11.34494 -11.29357 -11.05976 -10.99666 -10.90450 -10.82297 -10.60473 -10.31439 -10.16075 -9.98133 -9.71311 -9.19605 -8.97105 -8.44236 -7.96111 -6.84520 -5.93304 -3.33759 0.03425 0.94299 1.49825 1.62686 2.78462 3.15012 3.29384 3.32678 3.40271 3.41928 3.68320 4.32455 4.41465 4.49453 4.72004 4.78368 4.82379 4.92568 5.16046 5.17157 5.27233 5.31123 5.47774 5.65087 5.69898 5.82407 5.98162 6.05004 6.06762 6.14204 6.23804 6.38697 6.44294 6.58082 6.62982 6.70321 6.75287 6.93619 7.03434 7.08565 7.23331 7.72928 7.81332 7.89643 8.30819 8.83690 9.08375 9.70516 10.22034 11.14671 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.004091 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.072655 B = 6842.279640 C = 7966.504832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 N -0.561 5.561 4 C -0.251 4.251 5 H 0.075 0.925 6 C 0.001 3.999 7 N -0.898 5.898 8 Si 0.903 3.097 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.174 3.826 13 H 0.132 0.868 14 C -0.164 4.164 15 C 0.518 3.482 16 O -0.507 6.507 17 N -0.671 5.671 18 C 0.151 3.849 19 C -0.047 4.047 20 C -0.060 4.060 21 N 0.037 4.963 22 O -0.178 6.178 23 O -0.155 6.155 24 C -0.048 4.048 25 C -0.191 4.191 26 C 0.139 3.861 27 O -0.303 6.303 28 C 0.025 3.975 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.413 0.587 39 H 0.187 0.813 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.719 1.540 16.097 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.279 5.279 4 C -0.380 4.380 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.542 5.542 8 Si 0.733 3.267 9 H -0.214 1.214 10 H -0.219 1.219 11 H -0.203 1.203 12 C 0.061 3.939 13 H 0.149 0.851 14 C -0.223 4.223 15 C 0.307 3.693 16 O -0.380 6.380 17 N -0.317 5.317 18 C 0.052 3.948 19 C -0.069 4.069 20 C -0.144 4.144 21 N 0.555 4.445 22 O -0.390 6.390 23 O -0.373 6.373 24 C -0.068 4.068 25 C -0.211 4.211 26 C 0.090 3.910 27 O -0.215 6.215 28 C -0.070 4.070 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.249 0.751 39 H 0.204 0.796 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.828 1.773 15.639 15.991 hybrid contribution 0.443 0.839 -0.378 1.021 sum 3.271 2.612 15.261 15.824 Atomic orbital electron populations 1.22423 0.99835 0.99179 1.01374 1.20813 0.91201 0.86490 0.99951 1.43738 1.73384 1.09094 1.01675 1.19247 1.13865 1.12795 0.92134 0.90754 1.25015 0.94534 1.01508 0.98716 1.70052 1.10137 1.33005 1.41052 0.86251 0.77030 0.82032 0.81412 1.21416 1.21892 1.20254 1.20325 0.88686 0.99240 0.85617 0.85110 1.22447 1.00131 1.01389 0.98374 1.22973 0.84303 0.84931 0.77110 1.90513 1.59856 1.25978 1.61614 1.44077 1.30565 1.34138 1.22894 1.16959 0.91250 0.90015 0.96609 1.21344 0.96399 0.92219 0.96919 1.20782 1.03108 0.81983 1.08518 1.43481 0.99377 1.03120 0.98536 1.94474 1.22030 1.68494 1.54031 1.94584 1.43100 1.67655 1.31933 1.20636 0.97968 0.93789 0.94427 1.20927 0.99723 0.94644 1.05789 1.19086 0.92769 0.83806 0.95344 1.86119 1.51759 1.20174 1.63455 1.23191 0.92915 0.98566 0.92352 0.93473 0.93148 0.94391 0.93707 0.93647 0.93561 0.93114 0.93693 0.91493 0.75082 0.79574 0.83104 0.83205 0.92235 0.92107 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.02 10.01 37.16 0.37 -2.65 16 2 C 0.14 3.05 5.06 -4.04 -0.02 3.03 16 3 N -0.56 -13.33 2.18 -166.97 -0.36 -13.69 16 4 C -0.25 -6.58 9.56 -15.06 -0.14 -6.73 16 5 H 0.07 1.94 7.92 -52.49 -0.42 1.53 16 6 C 0.00 0.02 4.80 -17.43 -0.08 -0.06 16 7 N -0.90 -24.66 11.07 55.49 0.61 -24.05 16 8 Si 0.90 20.90 29.60 -169.99 -5.03 15.87 16 9 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.17 3.69 2.23 -69.08 -0.15 3.54 16 13 H 0.13 3.09 5.70 -51.93 -0.30 2.80 16 14 C -0.16 -2.71 8.15 37.16 0.30 -2.41 16 15 C 0.52 10.87 6.50 -10.99 -0.07 10.80 16 16 O -0.51 -12.32 11.62 5.55 0.06 -12.26 16 17 N -0.67 -11.35 5.19 -9.75 -0.05 -11.40 16 18 C 0.15 2.43 6.45 -83.49 -0.54 1.90 16 19 C -0.05 -0.82 8.28 -39.41 -0.33 -1.15 16 20 C -0.06 -0.95 6.85 -79.95 -0.55 -1.50 16 21 N 0.04 0.66 4.45 33.96 0.15 0.81 16 22 O -0.18 -3.01 18.44 -29.46 -0.54 -3.55 16 23 O -0.15 -2.99 18.44 -29.46 -0.54 -3.54 16 24 C -0.05 -0.59 9.55 -39.57 -0.38 -0.96 16 25 C -0.19 -2.03 9.04 -39.47 -0.36 -2.38 16 26 C 0.14 1.80 6.70 -39.08 -0.26 1.54 16 27 O -0.30 -3.43 9.94 -19.66 -0.20 -3.63 16 28 C 0.02 0.16 9.81 101.05 0.99 1.15 16 29 H 0.05 0.79 6.13 -51.93 -0.32 0.48 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 1.03 8.09 -51.93 -0.42 0.61 16 33 H 0.05 0.98 6.46 -51.93 -0.34 0.64 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.05 0.82 6.63 -51.93 -0.34 0.47 16 36 H 0.04 0.60 7.48 -51.93 -0.39 0.21 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.41 5.86 7.69 -40.82 -0.31 5.55 16 39 H 0.19 3.75 5.18 -52.49 -0.27 3.48 16 40 H 0.15 1.51 7.60 -52.48 -0.40 1.11 16 41 H 0.15 1.02 6.30 -52.49 -0.33 0.69 16 42 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 43 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 44 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -32.05 366.62 -7.04 -39.10 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.45 Total: 6.71 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.22 Total: 4.10 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.35 Total: -48.32 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.22 Total: -22.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.05 -7.04 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.132 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds