Wall clock time and date at job start Tue Mar 31 2020 22:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47057 * 2 1 4 4 C 1.36935 * 119.99876 * 276.12132 * 3 2 1 5 5 H 1.07991 * 120.00347 * 27.42586 * 4 3 2 6 6 C 1.38808 * 119.99668 * 207.41489 * 4 3 2 7 7 N 1.31625 * 120.00185 * 21.34360 * 6 4 3 8 8 Si 1.86807 * 120.00156 * 201.33887 * 6 4 3 9 9 H 1.48502 * 109.46879 * 94.99371 * 8 6 4 10 10 H 1.48499 * 109.47090 * 214.99299 * 8 6 4 11 11 H 1.48496 * 109.46940 * 334.99580 * 8 6 4 12 12 C 1.46507 * 119.99656 * 96.11808 * 3 2 1 13 13 H 1.09002 * 109.46788 * 180.02562 * 12 3 2 14 14 C 1.53001 * 109.47250 * 300.00304 * 12 3 2 15 15 C 1.50701 * 109.46925 * 60.00242 * 12 3 2 16 16 O 1.21289 * 119.99768 * 359.97438 * 15 12 3 17 17 N 1.34769 * 119.99919 * 179.97438 * 15 12 3 18 18 C 1.40124 * 120.00330 * 184.20181 * 17 15 12 19 19 C 1.38722 * 120.08538 * 332.80725 * 18 17 15 20 20 C 1.38204 * 119.98414 * 179.76474 * 19 18 17 21 21 N 1.48015 * 119.91668 * 180.20667 * 20 19 18 22 22 O 1.21804 * 119.99642 * 180.27312 * 21 20 19 23 23 O 1.21798 * 120.00139 * 0.27737 * 21 20 19 24 24 C 1.38273 * 120.15930 * 0.48912 * 20 19 18 25 25 C 1.38247 * 120.18274 * 359.76151 * 24 20 19 26 26 C 1.38543 * 120.01375 * 0.02562 * 25 24 20 27 27 O 1.35973 * 120.08259 * 179.97438 * 26 25 24 28 28 C 1.42897 * 116.99995 * 0.02562 * 27 26 25 29 29 H 1.09006 * 109.46786 * 299.99633 * 1 2 3 30 30 H 1.08999 * 109.47195 * 59.99841 * 1 2 3 31 31 H 1.08997 * 109.46975 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46659 * 240.00161 * 2 1 3 33 33 H 1.08999 * 109.47195 * 120.00158 * 2 1 3 34 34 H 0.97002 * 120.00060 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46991 * 59.99926 * 14 12 3 36 36 H 1.08991 * 109.46755 * 180.02562 * 14 12 3 37 37 H 1.09001 * 109.46995 * 299.99937 * 14 12 3 38 38 H 0.97009 * 119.99860 * 4.20350 * 17 15 12 39 39 H 1.08000 * 120.01103 * 359.97438 * 19 18 17 40 40 H 1.08007 * 119.90900 * 179.74823 * 24 20 19 41 41 H 1.08002 * 119.99348 * 179.97438 * 25 24 20 42 42 H 1.09002 * 109.47200 * 300.00076 * 28 27 26 43 43 H 1.09003 * 109.47182 * 59.99825 * 28 27 26 44 44 H 1.09003 * 109.47133 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1274 2.0689 -1.1791 5 1 1.4852 1.8198 -2.0109 6 6 3.0632 3.0863 -1.3052 7 7 4.1030 3.1277 -0.4993 8 14 2.8469 4.3968 -2.6188 9 1 2.1652 5.5783 -2.0318 10 1 4.1779 4.8010 -3.1387 11 1 2.0257 3.8529 -3.7301 12 6 2.3900 2.0267 1.2616 13 1 2.7268 3.0443 1.0636 14 6 1.1764 2.0637 2.1925 15 6 3.5016 1.2476 1.9161 16 8 3.9398 0.2509 1.3816 17 7 4.0086 1.6582 3.0953 18 6 5.1002 0.9858 3.6609 19 6 5.3144 -0.3549 3.3764 20 6 6.3944 -1.0148 3.9316 21 7 6.6241 -2.4442 3.6234 22 8 7.5726 -3.0285 4.1158 23 8 5.8647 -3.0360 2.8774 24 6 7.2574 -0.3445 4.7788 25 6 7.0474 0.9903 5.0711 26 6 5.9696 1.6602 4.5152 27 8 5.7614 2.9729 4.8020 28 6 6.6941 3.5999 5.6845 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 4.7571 3.8385 -0.5877 35 1 0.8392 1.0462 2.3905 36 1 1.4528 2.5443 3.1308 37 1 0.3724 2.6272 1.7191 38 1 3.6179 2.4193 3.5526 39 1 4.6393 -0.8821 2.7186 40 1 8.0978 -0.8653 5.2136 41 1 7.7232 1.5108 5.7335 42 1 6.6875 3.0855 6.6455 43 1 7.6936 3.5495 5.2524 44 1 6.4132 4.6432 5.8285 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299328874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:06 Heat of formation + Delta-G solvation = -34.376071 kcal Electronic energy + Delta-G solvation = -30425.497983 eV Core-core repulsion = 26154.409018 eV Total energy + Delta-G solvation = -4271.088965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.28149 -41.99896 -40.61391 -38.71573 -37.69661 -37.59145 -35.88357 -33.91689 -32.87741 -32.23619 -30.87115 -29.98069 -28.73202 -26.94290 -26.28947 -25.24508 -23.89495 -23.27112 -22.54103 -21.07802 -20.54294 -19.76612 -19.33749 -18.89533 -18.63436 -18.06213 -17.57234 -17.18510 -16.86100 -16.64379 -16.08912 -15.63045 -15.51179 -15.39715 -14.99326 -14.81246 -14.45571 -14.16378 -14.05280 -13.58314 -13.48347 -13.36317 -13.15652 -13.05081 -12.75456 -12.70317 -12.59380 -12.42512 -12.35184 -12.31337 -12.31112 -12.20764 -12.00667 -11.91053 -11.59228 -11.40515 -10.80457 -10.32578 -10.13063 -9.19369 -8.72384 -7.92164 -5.35088 -1.21322 -0.15246 0.27093 0.39635 1.46633 1.49075 1.57810 1.76076 1.92081 2.02614 2.36593 2.51410 3.21874 3.35286 3.52272 3.57658 3.62983 3.74747 4.04555 4.30612 4.38258 4.41593 4.43048 4.44011 4.50272 4.63483 4.66579 4.74882 4.81491 4.82553 4.84436 4.93577 4.96388 5.09445 5.25848 5.27457 5.28001 5.45205 5.48992 5.60052 5.66807 6.05879 6.33979 6.44913 6.52542 7.08503 7.34699 7.81193 8.28963 9.13012 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.004091 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.072655 B = 6842.279640 C = 7966.504832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 N -0.577 5.577 4 C -0.262 4.262 5 H 0.067 0.933 6 C -0.044 4.044 7 N -0.923 5.923 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.301 1.301 11 H -0.275 1.275 12 C 0.170 3.830 13 H 0.108 0.892 14 C -0.152 4.152 15 C 0.516 3.484 16 O -0.552 6.552 17 N -0.659 5.659 18 C 0.118 3.882 19 C -0.067 4.067 20 C -0.083 4.083 21 N 0.039 4.961 22 O -0.136 6.136 23 O -0.236 6.236 24 C -0.025 4.025 25 C -0.172 4.172 26 C 0.161 3.839 27 O -0.315 6.315 28 C 0.008 3.992 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.016 0.984 33 H 0.038 0.962 34 H 0.249 0.751 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.425 0.575 39 H 0.148 0.852 40 H 0.185 0.815 41 H 0.204 0.796 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 3.688 19.282 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 N -0.297 5.297 4 C -0.392 4.392 5 H 0.085 0.915 6 C -0.240 4.240 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.203 1.203 10 H -0.229 1.229 11 H -0.200 1.200 12 C 0.059 3.941 13 H 0.125 0.875 14 C -0.211 4.211 15 C 0.306 3.694 16 O -0.428 6.428 17 N -0.306 5.306 18 C 0.020 3.980 19 C -0.089 4.089 20 C -0.168 4.168 21 N 0.552 4.448 22 O -0.363 6.363 23 O -0.434 6.434 24 C -0.045 4.045 25 C -0.191 4.191 26 C 0.110 3.890 27 O -0.227 6.227 28 C -0.085 4.085 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.263 0.737 39 H 0.166 0.834 40 H 0.203 0.797 41 H 0.221 0.779 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.912 3.922 18.781 19.581 hybrid contribution 0.291 0.264 -1.133 1.199 sum 4.203 4.186 17.648 18.618 Atomic orbital electron populations 1.22229 0.96520 1.00829 1.01621 1.20820 0.93653 0.85594 0.98234 1.43960 1.73968 1.09664 1.02078 1.19456 1.13508 1.13142 0.93063 0.91488 1.25668 0.94284 1.03187 1.00850 1.70210 1.10753 1.33304 1.42598 0.85287 0.76272 0.79841 0.79226 1.20322 1.22874 1.19958 1.20422 0.90465 0.97555 0.85683 0.87478 1.22304 0.97940 1.02065 0.98769 1.22819 0.84195 0.84371 0.78056 1.90519 1.61219 1.27846 1.63265 1.43641 1.30889 1.34185 1.21844 1.17075 0.92318 0.89893 0.98728 1.21010 0.97059 0.93170 0.97654 1.20934 1.04307 0.80880 1.10665 1.43755 0.98991 1.03967 0.98061 1.94399 1.20910 1.68922 1.52019 1.94610 1.44889 1.68804 1.35107 1.21137 0.97143 0.94294 0.91925 1.21470 0.99003 0.93691 1.04939 1.19126 0.91907 0.84688 0.93233 1.86137 1.53354 1.19008 1.64209 1.23669 0.92632 0.99493 0.92702 0.92103 0.93860 0.92033 0.96538 0.94380 0.94165 0.92830 0.90193 0.91241 0.73651 0.83439 0.79747 0.77923 0.89443 0.90735 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 10.01 71.98 0.72 -4.77 16 2 C 0.14 6.47 5.06 86.38 0.44 6.90 16 3 N -0.58 -28.58 2.18 -682.19 -1.49 -30.06 16 4 C -0.26 -14.20 9.56 84.03 0.80 -13.40 16 5 H 0.07 3.63 7.92 -2.92 -0.02 3.61 16 6 C -0.04 -2.38 4.80 84.86 0.41 -1.98 16 7 N -0.92 -52.32 11.07 21.65 0.24 -52.08 16 8 Si 0.97 43.85 29.60 68.60 2.03 45.88 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.17 7.45 2.23 44.24 0.10 7.55 16 13 H 0.11 5.23 5.70 -2.39 -0.01 5.21 16 14 C -0.15 -4.93 8.15 71.98 0.59 -4.35 16 15 C 0.52 22.71 6.50 87.66 0.57 23.28 16 16 O -0.55 -28.97 11.62 -3.06 -0.04 -29.00 16 17 N -0.66 -22.71 5.19 -303.15 -1.57 -24.28 16 18 C 0.12 3.81 6.45 38.19 0.25 4.05 16 19 C -0.07 -2.46 8.28 22.38 0.19 -2.28 16 20 C -0.08 -2.64 6.85 36.38 0.25 -2.39 16 21 N 0.04 1.42 4.45 -46.46 -0.21 1.21 16 22 O -0.14 -4.43 18.44 18.88 0.35 -4.08 16 23 O -0.24 -10.00 18.44 18.89 0.35 -9.65 16 24 C -0.03 -0.53 9.55 22.28 0.21 -0.31 16 25 C -0.17 -2.80 9.04 22.34 0.20 -2.60 16 26 C 0.16 3.70 6.70 22.60 0.15 3.85 16 27 O -0.32 -6.00 9.94 -93.24 -0.93 -6.93 16 28 C 0.01 0.07 9.81 113.37 1.11 1.18 16 29 H 0.06 2.01 6.13 -2.38 -0.01 1.99 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.02 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.04 1.76 6.46 -2.39 -0.02 1.74 16 34 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.05 1.70 6.63 -2.39 -0.02 1.69 16 36 H 0.08 2.00 7.48 -2.39 -0.02 1.98 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.42 11.86 7.69 -92.70 -0.71 11.15 16 39 H 0.15 6.65 5.18 -2.91 -0.02 6.64 16 40 H 0.19 2.66 7.60 -2.91 -0.02 2.64 16 41 H 0.20 1.21 6.30 -2.91 -0.02 1.19 16 42 H 0.09 0.27 7.66 -2.39 -0.02 0.25 16 43 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -76.93 366.62 5.07 -71.87 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.35 Total: 22.39 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.98 Total: 14.74 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -3.03 Total: -105.20 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.27 Total: -49.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -76.93 5.07 -71.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.490 kcal (2) G-P(sol) polarization free energy of solvation -76.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds