Wall clock time and date at job start Tue Mar 31 2020 22:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46511 * 109.47020 * 2 1 4 4 C 1.36935 * 119.99516 * 83.59175 * 3 2 1 5 5 H 1.08000 * 119.99394 * 169.91570 * 4 3 2 6 6 C 1.38806 * 120.00322 * 349.91617 * 4 3 2 7 7 N 1.31620 * 120.00465 * 2.14357 * 6 4 3 8 8 Si 1.86810 * 119.99979 * 182.14044 * 6 4 3 9 9 H 1.48500 * 109.46661 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47169 * 120.00146 * 8 6 4 11 11 H 1.48497 * 109.46774 * 240.00237 * 8 6 4 12 12 C 1.46491 * 119.99985 * 263.59461 * 3 2 1 13 13 H 1.09000 * 109.47255 * 174.01543 * 12 3 2 14 14 C 1.53000 * 109.47135 * 54.01937 * 12 3 2 15 15 C 1.50697 * 109.47512 * 294.02168 * 12 3 2 16 16 O 1.21301 * 119.99498 * 8.38410 * 15 12 3 17 17 N 1.34770 * 120.00525 * 188.38986 * 15 12 3 18 18 C 1.40127 * 120.00254 * 183.94978 * 17 15 12 19 19 C 1.38722 * 120.08688 * 327.09740 * 18 17 15 20 20 C 1.38200 * 119.98266 * 180.02562 * 19 18 17 21 21 N 1.48018 * 119.91767 * 180.02562 * 20 19 18 22 22 O 1.21801 * 119.99902 * 0.02562 * 21 20 19 23 23 O 1.21793 * 120.00142 * 180.02562 * 21 20 19 24 24 C 1.38281 * 120.16249 * 0.02562 * 20 19 18 25 25 C 1.38236 * 120.18142 * 359.74075 * 24 20 19 26 26 C 1.38555 * 120.01282 * 0.51077 * 25 24 20 27 27 O 1.35973 * 120.08139 * 179.76735 * 26 25 24 28 28 C 1.42904 * 117.00225 * 359.72347 * 27 26 25 29 29 H 1.08996 * 109.47066 * 306.14616 * 1 2 3 30 30 H 1.08997 * 109.47010 * 66.15087 * 1 2 3 31 31 H 1.09001 * 109.46680 * 186.14735 * 1 2 3 32 32 H 1.09000 * 109.47639 * 240.00312 * 2 1 3 33 33 H 1.08998 * 109.47667 * 119.99696 * 2 1 3 34 34 H 0.96992 * 120.00173 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47581 * 299.99661 * 14 12 3 36 36 H 1.09001 * 109.47500 * 60.00177 * 14 12 3 37 37 H 1.09006 * 109.47089 * 179.97438 * 14 12 3 38 38 H 0.97005 * 119.99866 * 3.94747 * 17 15 12 39 39 H 1.08001 * 120.00987 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.90514 * 180.02562 * 24 20 19 41 41 H 1.07999 * 119.99436 * 180.25623 * 25 24 20 42 42 H 1.08999 * 109.47277 * 179.97438 * 28 27 26 43 43 H 1.08995 * 109.46850 * 300.00488 * 28 27 26 44 44 H 1.09002 * 109.46852 * 59.99648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1218 2.0709 1.1785 5 1 2.6303 3.0233 1.2040 6 6 1.5731 1.5458 2.3404 7 7 0.9904 0.3658 2.3182 8 14 1.6617 2.5138 3.9357 9 1 2.3631 3.8004 3.6955 10 1 0.2870 2.7832 4.4282 11 1 2.4061 1.7268 4.9514 12 6 2.3960 2.0247 -1.2607 13 1 2.6305 3.0733 -1.0776 14 6 1.2337 1.9276 -2.2510 15 6 3.6048 1.3325 -1.8357 16 8 4.0104 0.3048 -1.3351 17 7 4.2352 1.8553 -2.9060 18 6 5.3078 1.1696 -3.4915 19 6 6.1559 0.4036 -2.7050 20 6 7.2134 -0.2714 -3.2846 21 7 8.1171 -1.0887 -2.4442 22 8 7.9279 -1.1661 -1.2434 23 8 9.0498 -1.6838 -2.9533 24 6 7.4294 -0.1851 -4.6477 25 6 6.5857 0.5723 -5.4385 26 6 5.5263 1.2563 -4.8644 27 8 4.6983 2.0056 -5.6403 28 6 4.9828 2.0480 -7.0401 29 1 -0.3633 0.6061 0.8298 30 1 -0.3633 0.4155 -0.9399 31 1 -0.3633 -1.0218 0.1101 32 1 1.8935 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 0.6067 -0.0010 3.1300 35 1 0.9991 0.8791 -2.4343 36 1 0.3593 2.4283 -1.8352 37 1 1.5145 2.4068 -3.1889 38 1 3.9464 2.7064 -3.2712 39 1 5.9898 0.3348 -1.6401 40 1 8.2569 -0.7146 -5.0963 41 1 6.7548 0.6343 -6.5034 42 1 4.2483 2.6784 -7.5412 43 1 5.9807 2.4579 -7.1957 44 1 4.9363 1.0394 -7.4510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299328875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:13 Heat of formation + Delta-G solvation = 1.501565 kcal Electronic energy + Delta-G solvation = -30068.046640 eV Core-core repulsion = 25798.513446 eV Total energy + Delta-G solvation = -4269.533194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -42.09016 -40.99806 -39.48544 -37.80718 -36.42233 -36.09828 -34.67824 -32.44910 -31.33495 -30.43488 -29.48125 -28.53651 -28.12350 -25.96874 -24.55578 -23.80741 -22.57402 -22.12279 -20.99350 -19.61459 -19.30268 -18.57957 -18.51212 -17.39434 -17.17859 -16.91972 -16.39064 -16.32304 -15.90049 -15.13977 -14.88709 -14.62394 -14.16143 -13.78118 -13.73432 -13.48880 -13.33440 -13.03859 -12.64966 -12.20399 -11.97101 -11.90607 -11.79176 -11.76836 -11.43155 -11.30497 -11.11055 -11.03536 -10.99397 -10.79808 -10.71179 -10.57021 -10.37216 -9.91149 -9.70879 -9.52610 -9.37658 -9.08778 -8.34021 -8.24110 -6.89865 -5.62110 -3.15566 -0.12103 0.72676 1.34081 1.49056 2.58469 2.87278 3.03482 3.30889 3.38946 3.44387 3.46699 4.14669 4.30330 4.43604 4.53292 4.61275 4.65332 4.71658 4.99636 5.06655 5.25245 5.27781 5.41484 5.47447 5.51566 5.62271 5.76369 5.84002 5.94617 6.12238 6.37018 6.40226 6.45110 6.66919 6.77596 6.81231 7.09941 7.18245 7.35764 7.51463 7.63730 7.77479 8.00703 8.22495 8.45538 8.55779 9.25281 9.81751 10.23216 11.27841 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003599 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.646884 B = 7777.641204 C = 9256.206538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.173 3.827 3 N -0.569 5.569 4 C -0.251 4.251 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.899 5.899 8 Si 0.913 3.087 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.290 1.290 12 C 0.164 3.836 13 H 0.090 0.910 14 C -0.153 4.153 15 C 0.485 3.515 16 O -0.499 6.499 17 N -0.673 5.673 18 C 0.138 3.862 19 C -0.034 4.034 20 C -0.061 4.061 21 N 0.035 4.965 22 O -0.151 6.151 23 O -0.175 6.175 24 C -0.041 4.041 25 C -0.192 4.192 26 C 0.144 3.856 27 O -0.304 6.304 28 C 0.023 3.977 29 H 0.085 0.915 30 H 0.002 0.998 31 H 0.018 0.982 32 H 0.005 0.995 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.414 0.586 39 H 0.181 0.819 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 4.915 -21.002 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.050 3.950 3 N -0.287 5.287 4 C -0.379 4.379 5 H 0.092 0.908 6 C -0.198 4.198 7 N -0.546 5.546 8 Si 0.743 3.257 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.217 1.217 12 C 0.049 3.951 13 H 0.108 0.892 14 C -0.212 4.212 15 C 0.271 3.729 16 O -0.370 6.370 17 N -0.321 5.321 18 C 0.040 3.960 19 C -0.056 4.056 20 C -0.145 4.145 21 N 0.553 4.447 22 O -0.369 6.369 23 O -0.387 6.387 24 C -0.061 4.061 25 C -0.212 4.212 26 C 0.095 3.905 27 O -0.216 6.216 28 C -0.071 4.071 29 H 0.103 0.897 30 H 0.021 0.979 31 H 0.037 0.963 32 H 0.023 0.977 33 H 0.118 0.882 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.251 0.749 39 H 0.198 0.802 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.896 4.580 -20.712 22.305 hybrid contribution 0.329 0.488 0.489 0.766 sum 7.226 5.068 -20.222 22.065 Atomic orbital electron populations 1.22477 0.99258 0.98889 0.98967 1.20948 0.91797 0.83328 0.98963 1.44063 1.72745 1.11845 1.00010 1.19383 1.30462 1.02127 0.85971 0.90811 1.24840 0.99520 0.97261 0.98209 1.70293 1.41664 1.16517 1.26101 0.86049 0.77166 0.78970 0.83506 1.20577 1.21691 1.21666 1.20215 0.89670 0.96499 0.88739 0.89199 1.22270 0.99260 1.02368 0.97292 1.23907 0.85645 0.85761 0.77582 1.90657 1.65113 1.23670 1.57542 1.44186 1.30892 1.24453 1.32607 1.16901 0.91573 0.99815 0.87686 1.21140 0.88454 0.92392 1.03615 1.20792 0.97370 1.04963 0.91353 1.43480 1.00339 0.99351 1.01531 1.94619 1.77716 1.67596 0.96984 1.94481 1.22471 1.45099 1.76641 1.20693 0.99003 0.96154 0.90243 1.20969 0.96823 1.02372 1.01069 1.19126 0.90552 0.91571 0.89276 1.86114 1.50515 1.64595 1.20338 1.23216 1.02869 1.02920 0.78121 0.89689 0.97909 0.96291 0.97705 0.88235 0.93910 0.92408 0.91152 0.93528 0.74928 0.80192 0.82880 0.83045 0.87480 0.92088 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.08 37.16 0.34 -2.91 16 2 C 0.17 4.37 4.28 -4.03 -0.02 4.35 16 3 N -0.57 -13.71 2.22 -166.98 -0.37 -14.08 16 4 C -0.25 -6.58 9.75 -15.06 -0.15 -6.72 16 5 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 6 C 0.00 -0.05 5.20 -17.43 -0.09 -0.14 16 7 N -0.90 -24.96 7.28 55.49 0.40 -24.56 16 8 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.16 3.08 3.10 -69.09 -0.21 2.86 16 13 H 0.09 1.54 7.82 -51.93 -0.41 1.13 16 14 C -0.15 -2.43 8.09 37.16 0.30 -2.13 16 15 C 0.48 8.88 6.78 -10.99 -0.07 8.80 16 16 O -0.50 -11.20 12.11 5.54 0.07 -11.13 16 17 N -0.67 -9.33 5.21 -9.75 -0.05 -9.38 16 18 C 0.14 1.88 6.35 -83.49 -0.53 1.35 16 19 C -0.03 -0.54 8.22 -39.42 -0.32 -0.86 16 20 C -0.06 -0.87 6.85 -79.95 -0.55 -1.42 16 21 N 0.03 0.58 4.45 33.96 0.15 0.73 16 22 O -0.15 -2.84 18.44 -29.46 -0.54 -3.38 16 23 O -0.17 -2.78 18.44 -29.46 -0.54 -3.32 16 24 C -0.04 -0.43 9.55 -39.57 -0.38 -0.81 16 25 C -0.19 -1.64 9.04 -39.47 -0.36 -2.00 16 26 C 0.14 1.50 6.70 -39.07 -0.26 1.24 16 27 O -0.30 -2.61 10.03 -19.66 -0.20 -2.81 16 28 C 0.02 0.10 9.81 101.05 0.99 1.09 16 29 H 0.08 2.24 6.04 -51.93 -0.31 1.93 16 30 H 0.00 0.04 6.32 -51.93 -0.33 -0.28 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.00 0.12 6.47 -51.93 -0.34 -0.22 16 33 H 0.10 2.88 5.93 -51.93 -0.31 2.58 16 34 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.06 1.01 6.56 -51.93 -0.34 0.67 16 36 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.41 4.46 8.52 -40.82 -0.35 4.11 16 39 H 0.18 3.40 5.62 -52.49 -0.30 3.10 16 40 H 0.15 1.28 7.60 -52.49 -0.40 0.89 16 41 H 0.15 0.73 6.30 -52.49 -0.33 0.40 16 42 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 44 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -32.43 362.85 -7.38 -39.81 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.43 Total: 3.48 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.31 Total: 2.72 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.13 Total: -47.29 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.22 Total: -20.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.43 -7.38 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.311 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds