Wall clock time and date at job start Tue Mar 31 2020 22:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46511 * 109.47020 * 2 1 4 4 C 1.36935 * 119.99516 * 83.59175 * 3 2 1 5 5 H 1.08000 * 119.99394 * 169.91570 * 4 3 2 6 6 C 1.38806 * 120.00322 * 349.91617 * 4 3 2 7 7 N 1.31620 * 120.00465 * 2.14357 * 6 4 3 8 8 Si 1.86810 * 119.99979 * 182.14044 * 6 4 3 9 9 H 1.48500 * 109.46661 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47169 * 120.00146 * 8 6 4 11 11 H 1.48497 * 109.46774 * 240.00237 * 8 6 4 12 12 C 1.46491 * 119.99985 * 263.59461 * 3 2 1 13 13 H 1.09000 * 109.47255 * 174.01543 * 12 3 2 14 14 C 1.53000 * 109.47135 * 54.01937 * 12 3 2 15 15 C 1.50697 * 109.47512 * 294.02168 * 12 3 2 16 16 O 1.21301 * 119.99498 * 8.38410 * 15 12 3 17 17 N 1.34770 * 120.00525 * 188.38986 * 15 12 3 18 18 C 1.40127 * 120.00254 * 183.94978 * 17 15 12 19 19 C 1.38722 * 120.08688 * 327.09740 * 18 17 15 20 20 C 1.38200 * 119.98266 * 180.02562 * 19 18 17 21 21 N 1.48018 * 119.91767 * 180.02562 * 20 19 18 22 22 O 1.21801 * 119.99902 * 0.02562 * 21 20 19 23 23 O 1.21793 * 120.00142 * 180.02562 * 21 20 19 24 24 C 1.38281 * 120.16249 * 0.02562 * 20 19 18 25 25 C 1.38236 * 120.18142 * 359.74075 * 24 20 19 26 26 C 1.38555 * 120.01282 * 0.51077 * 25 24 20 27 27 O 1.35973 * 120.08139 * 179.76735 * 26 25 24 28 28 C 1.42904 * 117.00225 * 359.72347 * 27 26 25 29 29 H 1.08996 * 109.47066 * 306.14616 * 1 2 3 30 30 H 1.08997 * 109.47010 * 66.15087 * 1 2 3 31 31 H 1.09001 * 109.46680 * 186.14735 * 1 2 3 32 32 H 1.09000 * 109.47639 * 240.00312 * 2 1 3 33 33 H 1.08998 * 109.47667 * 119.99696 * 2 1 3 34 34 H 0.96992 * 120.00173 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.47581 * 299.99661 * 14 12 3 36 36 H 1.09001 * 109.47500 * 60.00177 * 14 12 3 37 37 H 1.09006 * 109.47089 * 179.97438 * 14 12 3 38 38 H 0.97005 * 119.99866 * 3.94747 * 17 15 12 39 39 H 1.08001 * 120.00987 * 0.02562 * 19 18 17 40 40 H 1.07998 * 119.90514 * 180.02562 * 24 20 19 41 41 H 1.07999 * 119.99436 * 180.25623 * 25 24 20 42 42 H 1.08999 * 109.47277 * 179.97438 * 28 27 26 43 43 H 1.08995 * 109.46850 * 300.00488 * 28 27 26 44 44 H 1.09002 * 109.46852 * 59.99648 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1218 2.0709 1.1785 5 1 2.6303 3.0233 1.2040 6 6 1.5731 1.5458 2.3404 7 7 0.9904 0.3658 2.3182 8 14 1.6617 2.5138 3.9357 9 1 2.3631 3.8004 3.6955 10 1 0.2870 2.7832 4.4282 11 1 2.4061 1.7268 4.9514 12 6 2.3960 2.0247 -1.2607 13 1 2.6305 3.0733 -1.0776 14 6 1.2337 1.9276 -2.2510 15 6 3.6048 1.3325 -1.8357 16 8 4.0104 0.3048 -1.3351 17 7 4.2352 1.8553 -2.9060 18 6 5.3078 1.1696 -3.4915 19 6 6.1559 0.4036 -2.7050 20 6 7.2134 -0.2714 -3.2846 21 7 8.1171 -1.0887 -2.4442 22 8 7.9279 -1.1661 -1.2434 23 8 9.0498 -1.6838 -2.9533 24 6 7.4294 -0.1851 -4.6477 25 6 6.5857 0.5723 -5.4385 26 6 5.5263 1.2563 -4.8644 27 8 4.6983 2.0056 -5.6403 28 6 4.9828 2.0480 -7.0401 29 1 -0.3633 0.6061 0.8298 30 1 -0.3633 0.4155 -0.9399 31 1 -0.3633 -1.0218 0.1101 32 1 1.8935 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8900 34 1 0.6067 -0.0010 3.1300 35 1 0.9991 0.8791 -2.4343 36 1 0.3593 2.4283 -1.8352 37 1 1.5145 2.4068 -3.1889 38 1 3.9464 2.7064 -3.2712 39 1 5.9898 0.3348 -1.6401 40 1 8.2569 -0.7146 -5.0963 41 1 6.7548 0.6343 -6.5034 42 1 4.2483 2.6784 -7.5412 43 1 5.9807 2.4579 -7.1957 44 1 4.9363 1.0394 -7.4510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299328875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:11 Heat of formation + Delta-G solvation = -19.684624 kcal Electronic energy + Delta-G solvation = -30068.965342 eV Core-core repulsion = 25798.513446 eV Total energy + Delta-G solvation = -4270.451896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.29869 -42.04921 -40.68673 -38.75398 -37.81314 -37.67269 -35.98679 -34.16570 -32.26783 -31.97620 -31.03892 -30.19641 -28.73605 -26.96459 -26.17216 -25.30590 -23.82955 -23.30706 -22.66117 -21.02251 -20.53114 -19.76781 -19.32670 -18.90792 -18.64129 -18.12026 -17.74753 -17.16863 -16.95203 -16.74497 -16.17323 -15.68440 -15.51377 -15.19222 -15.00312 -14.82392 -14.47288 -14.13592 -13.89215 -13.75591 -13.52115 -13.21486 -13.10363 -12.80715 -12.74635 -12.59853 -12.47288 -12.41834 -12.35888 -12.33705 -12.32410 -12.25005 -11.82182 -11.76337 -11.60044 -11.39769 -10.77544 -10.33614 -10.19744 -9.29554 -8.82634 -7.65024 -5.18572 -1.25177 -0.21778 0.23529 0.37896 1.47532 1.50573 1.58017 1.58706 1.83243 1.95687 2.24270 2.52726 3.30511 3.36885 3.51837 3.55481 3.59569 3.68383 3.99326 4.25727 4.31417 4.37231 4.39030 4.41041 4.45944 4.64536 4.71679 4.72890 4.86106 4.89963 4.93599 5.00496 5.15428 5.23031 5.24099 5.33334 5.37210 5.42915 5.57583 5.94234 6.02732 6.23365 6.35086 6.45111 6.47652 7.16796 7.22912 7.89454 8.27837 9.24344 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.012162 B = 0.003599 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.646884 B = 7777.641204 C = 9256.206538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.188 3.812 3 N -0.588 5.588 4 C -0.256 4.256 5 H 0.081 0.919 6 C -0.057 4.057 7 N -0.923 5.923 8 Si 0.972 3.028 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.303 1.303 12 C 0.156 3.844 13 H 0.109 0.891 14 C -0.140 4.140 15 C 0.488 3.512 16 O -0.550 6.550 17 N -0.654 5.654 18 C 0.112 3.888 19 C -0.056 4.056 20 C -0.085 4.085 21 N 0.038 4.962 22 O -0.246 6.246 23 O -0.130 6.130 24 C -0.019 4.019 25 C -0.172 4.172 26 C 0.173 3.827 27 O -0.309 6.309 28 C 0.007 3.993 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.019 0.981 32 H 0.001 0.999 33 H 0.054 0.946 34 H 0.241 0.759 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.431 0.569 39 H 0.134 0.866 40 H 0.185 0.815 41 H 0.206 0.794 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.099 6.992 -26.359 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.064 3.936 3 N -0.307 5.307 4 C -0.385 4.385 5 H 0.099 0.901 6 C -0.250 4.250 7 N -0.572 5.572 8 Si 0.801 3.199 9 H -0.192 1.192 10 H -0.216 1.216 11 H -0.230 1.230 12 C 0.043 3.957 13 H 0.126 0.874 14 C -0.199 4.199 15 C 0.275 3.725 16 O -0.425 6.425 17 N -0.303 5.303 18 C 0.015 3.985 19 C -0.078 4.078 20 C -0.170 4.170 21 N 0.550 4.450 22 O -0.442 6.442 23 O -0.359 6.359 24 C -0.038 4.038 25 C -0.191 4.191 26 C 0.122 3.878 27 O -0.220 6.220 28 C -0.086 4.086 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.038 0.962 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.152 0.848 40 H 0.202 0.798 41 H 0.223 0.777 42 H 0.144 0.856 43 H 0.102 0.898 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.526 6.761 -25.991 27.891 hybrid contribution 0.266 -0.090 1.690 1.713 sum 7.791 6.671 -24.301 26.377 Atomic orbital electron populations 1.22236 0.98089 0.98545 0.98976 1.20542 0.92554 0.84102 0.96443 1.44129 1.73706 1.11403 1.01473 1.19726 1.29516 1.02246 0.87050 0.90116 1.25553 1.00205 0.98255 1.01002 1.70512 1.42865 1.17776 1.26019 0.85122 0.76819 0.78078 0.79879 1.19151 1.21629 1.23043 1.20567 0.90719 0.96887 0.87543 0.87362 1.22126 0.97670 1.01739 0.98348 1.23415 0.85561 0.85065 0.78417 1.90675 1.66430 1.26001 1.59424 1.43626 1.30494 1.24822 1.31325 1.16914 0.91484 1.00833 0.89284 1.20796 0.90422 0.94576 1.02023 1.20945 0.97459 1.06105 0.92505 1.43837 1.00473 0.99233 1.01453 1.94647 1.79776 1.71179 0.98556 1.94397 1.21919 1.43416 1.76136 1.21177 0.99515 0.95101 0.88034 1.21515 0.94601 0.99902 1.03131 1.19087 0.90407 0.90337 0.87953 1.86140 1.49917 1.63344 1.22628 1.23694 1.05000 1.04656 0.75264 0.92242 0.95565 0.96209 0.98088 0.92773 0.94834 0.94116 0.91459 0.88904 0.72912 0.84787 0.79773 0.77744 0.85603 0.89794 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 9.08 71.98 0.65 -5.17 16 2 C 0.19 9.97 4.28 86.38 0.37 10.34 16 3 N -0.59 -29.22 2.22 -682.21 -1.51 -30.73 16 4 C -0.26 -13.81 9.75 84.03 0.82 -12.99 16 5 H 0.08 4.12 7.71 -2.91 -0.02 4.10 16 6 C -0.06 -3.15 5.20 84.86 0.44 -2.71 16 7 N -0.92 -53.99 7.28 21.65 0.16 -53.84 16 8 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 12 C 0.16 5.81 3.10 44.25 0.14 5.95 16 13 H 0.11 3.58 7.82 -2.39 -0.02 3.57 16 14 C -0.14 -4.19 8.09 71.98 0.58 -3.61 16 15 C 0.49 18.25 6.78 87.66 0.59 18.84 16 16 O -0.55 -26.45 12.11 -3.10 -0.04 -26.49 16 17 N -0.65 -17.45 5.21 -303.14 -1.58 -19.03 16 18 C 0.11 2.92 6.35 38.18 0.24 3.17 16 19 C -0.06 -1.84 8.22 22.38 0.18 -1.66 16 20 C -0.09 -2.44 6.85 36.38 0.25 -2.19 16 21 N 0.04 1.30 4.45 -46.46 -0.21 1.09 16 22 O -0.25 -10.35 18.44 18.88 0.35 -10.00 16 23 O -0.13 -4.03 18.44 18.90 0.35 -3.68 16 24 C -0.02 -0.31 9.55 22.28 0.21 -0.10 16 25 C -0.17 -1.93 9.04 22.34 0.20 -1.73 16 26 C 0.17 2.87 6.70 22.60 0.15 3.02 16 27 O -0.31 -3.63 10.03 -93.25 -0.94 -4.57 16 28 C 0.01 0.01 9.81 113.37 1.11 1.13 16 29 H 0.06 3.23 6.04 -2.39 -0.01 3.22 16 30 H 0.03 1.11 6.32 -2.39 -0.02 1.09 16 31 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.00 0.05 6.47 -2.39 -0.02 0.03 16 33 H 0.05 3.37 5.93 -2.39 -0.01 3.35 16 34 H 0.24 13.89 8.31 -92.71 -0.77 13.11 16 35 H 0.04 1.36 6.56 -2.39 -0.02 1.35 16 36 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 37 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.43 8.14 8.52 -92.70 -0.79 7.35 16 39 H 0.13 5.72 5.62 -2.91 -0.02 5.71 16 40 H 0.19 2.04 7.60 -2.91 -0.02 2.01 16 41 H 0.21 0.21 6.30 -2.91 -0.02 0.20 16 42 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.08 -0.13 7.67 -2.39 -0.02 -0.15 16 44 H 0.08 -0.01 7.65 -2.39 -0.02 -0.03 16 Total: -1.00 -80.37 362.85 4.83 -75.53 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.27 Total: 11.77 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.95 Total: 12.28 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -3.14 Total: -102.51 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.28 Total: -44.74 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -80.37 4.83 -75.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299328875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.848 kcal (2) G-P(sol) polarization free energy of solvation -80.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds