Wall clock time and date at job start Tue Mar 31 2020 22:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46902 * 2 1 4 4 C 1.36762 * 127.13904 * 269.97568 * 3 2 1 5 5 C 1.50700 * 126.34319 * 0.06158 * 4 3 2 6 6 N 1.30305 * 107.31517 * 180.02562 * 4 3 2 7 7 N 1.28524 * 110.07735 * 0.02562 * 6 4 3 8 8 C 1.31279 * 109.86182 * 0.02562 * 7 6 4 9 9 S 1.76192 * 126.48644 * 180.02562 * 8 7 6 10 10 C 1.81001 * 100.00087 * 359.97375 * 9 8 7 11 11 C 1.50696 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00242 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99927 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99933 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47222 * 89.99945 * 14 13 11 16 16 H 1.07994 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99740 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00360 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99469 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47549 * 59.99739 * 19 17 15 21 21 H 1.48495 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46801 * 299.99549 * 19 17 15 23 23 C 1.46498 * 119.99962 * 359.97438 * 13 11 10 24 24 C 1.53001 * 109.47156 * 90.00180 * 23 13 11 25 25 C 1.47202 * 109.47074 * 180.02562 * 24 23 13 26 26 N 9.56651 * 98.94104 * 25.64298 * 2 1 3 27 27 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47413 * 299.99777 * 1 2 3 29 29 H 1.09004 * 109.47212 * 60.00584 * 1 2 3 30 30 H 1.09000 * 109.47172 * 239.99761 * 2 1 3 31 31 H 1.08999 * 109.46771 * 119.99258 * 2 1 3 32 32 H 1.08994 * 109.46858 * 269.99756 * 5 4 3 33 33 H 1.09001 * 109.46950 * 29.99516 * 5 4 3 34 34 H 1.08998 * 109.46965 * 149.99634 * 5 4 3 35 35 H 1.09000 * 109.46608 * 299.99574 * 10 9 8 36 36 H 1.08995 * 109.46795 * 60.00035 * 10 9 8 37 37 H 1.08999 * 109.47350 * 209.99838 * 14 13 11 38 38 H 1.09000 * 109.47209 * 329.99768 * 14 13 11 39 39 H 0.97000 * 119.99769 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.47005 * 210.00266 * 23 13 11 41 41 H 1.09000 * 109.47039 * 329.99995 * 23 13 11 42 42 H 1.08999 * 109.46798 * 299.99779 * 24 23 13 43 43 H 1.09000 * 109.47298 * 59.99973 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2939 2.1596 -1.0902 5 6 2.1505 1.7558 -2.5350 6 7 2.7028 3.3152 -0.6483 7 7 2.7051 3.3204 0.6369 8 6 2.2946 2.1581 1.0884 9 16 2.1290 1.6899 2.7789 10 6 2.6696 3.2188 3.5829 11 6 2.6098 3.0479 5.0789 12 8 2.2378 1.9961 5.5548 13 7 2.9686 4.0642 5.8882 14 6 2.9100 3.8982 7.3425 15 6 4.2296 3.3682 7.8413 16 1 5.0316 3.1740 7.1445 17 6 4.4127 3.1303 9.1870 18 7 3.4359 3.3663 10.0354 19 14 6.0487 2.4740 9.8053 20 1 7.1290 3.4326 9.4602 21 1 5.9888 2.3045 11.2793 22 1 6.3286 1.1622 9.1677 23 6 3.4174 5.3348 5.3134 24 6 2.2134 6.2575 5.1133 25 6 2.6642 7.5340 4.5352 26 7 3.0168 8.5195 4.0897 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 3.0845 1.3152 -2.8836 33 1 1.3466 1.0259 -2.6302 34 1 1.9165 2.6344 -3.1362 35 1 3.6933 3.4441 3.2839 36 1 2.0151 4.0374 3.2839 37 1 2.7052 4.8613 7.8101 38 1 2.1167 3.1951 7.5963 39 1 3.5647 3.1986 10.9820 40 1 4.1295 5.8081 5.9895 41 1 3.8969 5.1496 4.3522 42 1 1.5014 5.7842 4.4372 43 1 1.7339 6.4427 6.0744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338637038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:02 Heat of formation + Delta-G solvation = 66.652801 kcal Electronic energy + Delta-G solvation = -26079.720982 eV Core-core repulsion = 22288.058579 eV Total energy + Delta-G solvation = -3791.662403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.02499 -39.36856 -36.82383 -36.07105 -35.33025 -32.98272 -32.64541 -30.91987 -30.89475 -30.26489 -28.01468 -26.86274 -24.54120 -24.07292 -22.95284 -22.64847 -21.03326 -18.92896 -17.93261 -17.54022 -16.79239 -16.70776 -16.48894 -16.29905 -15.50048 -15.09011 -15.07351 -14.71883 -14.48133 -14.12380 -13.86749 -13.68588 -13.53310 -13.33272 -13.21957 -12.96555 -12.71899 -12.67949 -12.42542 -12.33189 -12.05811 -11.90235 -11.72602 -11.62871 -11.32074 -11.02379 -10.99587 -10.87836 -10.64274 -10.50170 -10.30945 -10.23857 -9.93033 -9.78714 -9.31621 -8.50353 -7.99218 -7.66939 -6.12506 -4.17483 0.92504 1.45348 1.95234 2.36184 2.64901 2.75360 2.86853 3.07293 3.29269 3.33845 3.36914 3.58082 4.06375 4.13535 4.14978 4.38805 4.45998 4.55369 4.72187 4.79270 5.00454 5.00672 5.02063 5.06191 5.12306 5.17057 5.23261 5.25605 5.38207 5.38768 5.49548 5.58552 5.66156 5.80933 5.83891 6.06338 6.52183 6.80201 7.24965 7.32968 7.63335 7.82646 8.07416 8.11677 8.49561 8.64082 8.87600 9.48197 10.95655 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003069 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.325737 B = 9119.830755 C =10663.304981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.462 5.462 4 C 0.175 3.825 5 C -0.064 4.064 6 N -0.286 5.286 7 N -0.296 5.296 8 C 0.145 3.855 9 S 0.077 5.923 10 C -0.145 4.145 11 C 0.526 3.474 12 O -0.520 6.520 13 N -0.586 5.586 14 C 0.246 3.754 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.893 5.893 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.113 3.887 24 C -0.049 4.049 25 C 0.216 3.784 26 N -0.442 5.442 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 -6.100 -21.216 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.157 5.157 4 C -0.094 4.094 5 C -0.123 4.123 6 N -0.127 5.127 7 N -0.141 5.141 8 C -0.229 4.229 9 S 0.304 5.696 10 C -0.297 4.297 11 C 0.310 3.690 12 O -0.396 6.396 13 N -0.318 5.318 14 C 0.127 3.873 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.532 5.532 19 Si 0.725 3.275 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.013 4.013 24 C -0.091 4.091 25 C -0.102 4.102 26 N -0.119 5.119 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.124 0.876 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.193 -4.801 -20.906 22.327 hybrid contribution 0.792 -0.755 0.005 1.094 sum -5.401 -5.555 -20.901 22.291 Atomic orbital electron populations 1.22171 0.93301 1.03768 1.03668 1.21985 0.96334 0.78571 1.05408 1.46504 1.50501 1.13829 1.04879 1.25058 1.03140 0.88948 0.92279 1.20199 1.03269 1.03200 0.85652 1.73918 1.18048 1.17449 1.03241 1.74675 1.20043 1.16247 1.03088 1.27368 1.05792 0.92299 0.97453 1.86193 1.82696 1.17383 0.83331 1.23924 1.07918 1.00191 0.97669 1.19345 0.78887 0.84774 0.85978 1.90738 1.46814 1.26086 1.75982 1.48122 1.63608 1.10656 1.09377 1.19431 0.98471 0.98199 0.71180 1.21366 0.98658 1.44469 0.92580 0.92294 1.24902 0.97019 0.95271 0.96649 1.69902 1.31851 1.48242 1.03161 0.86568 0.83677 0.79650 0.77618 1.20191 1.21185 1.20123 1.21408 0.94609 0.84781 1.00529 1.19856 1.00411 0.86120 1.02683 1.29083 0.93448 0.94549 0.93142 1.81272 1.08700 1.12070 1.09893 0.89875 0.91016 0.91833 0.88299 0.88031 0.89672 0.90463 0.88664 0.86001 0.86221 0.94324 0.93319 0.92540 0.88321 0.90287 0.87609 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.24 37.16 0.38 -0.57 16 2 C 0.10 0.65 6.48 -4.04 -0.03 0.62 16 3 N -0.46 -4.89 2.81 -113.54 -0.32 -5.21 16 4 C 0.18 1.92 8.07 -153.99 -1.24 0.68 16 5 C -0.06 -0.37 10.09 36.01 0.36 -0.01 16 6 N -0.29 -4.24 12.18 33.00 0.40 -3.83 16 7 N -0.30 -4.60 11.60 30.68 0.36 -4.25 16 8 C 0.15 1.95 8.07 -88.34 -0.71 1.23 16 9 S 0.08 1.04 20.94 -107.50 -2.25 -1.21 16 10 C -0.14 -2.01 4.27 36.00 0.15 -1.86 16 11 C 0.53 9.41 7.69 -10.99 -0.08 9.32 16 12 O -0.52 -11.44 15.44 5.56 0.09 -11.36 16 13 N -0.59 -10.45 2.46 -175.06 -0.43 -10.88 16 14 C 0.25 5.64 5.16 -5.19 -0.03 5.61 16 15 C -0.53 -13.91 9.39 -34.44 -0.32 -14.23 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 19 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.11 1.52 5.17 -4.04 -0.02 1.49 16 24 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 25 C 0.22 2.79 15.44 -20.71 -0.32 2.47 16 26 N -0.44 -6.93 18.55 42.21 0.78 -6.14 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.38 7.88 -51.93 -0.41 -0.02 16 31 H 0.10 0.67 7.86 -51.93 -0.41 0.27 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.27 7.93 -51.93 -0.41 -0.14 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.61 7.40 -51.92 -0.38 1.23 16 36 H 0.12 1.42 7.18 -51.92 -0.37 1.05 16 37 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.10 1.39 8.07 -51.93 -0.42 0.98 16 41 H 0.08 0.93 6.44 -51.93 -0.33 0.59 16 42 H 0.11 0.96 7.22 -51.93 -0.37 0.59 16 43 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -35.48 390.11 -7.91 -43.39 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -6.00 Total: -3.71 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -2.13 Total: 5.70 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 1.53 Total: -54.63 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.25 Total: -1.21 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.48 -7.91 -43.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338637038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.043 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds