Wall clock time and date at job start Tue Mar 31 2020 21:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46902 * 2 1 4 4 C 1.36762 * 127.13904 * 269.97568 * 3 2 1 5 5 C 1.50700 * 126.34319 * 0.06158 * 4 3 2 6 6 N 1.30305 * 107.31517 * 180.02562 * 4 3 2 7 7 N 1.28524 * 110.07735 * 0.02562 * 6 4 3 8 8 C 1.31279 * 109.86182 * 0.02562 * 7 6 4 9 9 S 1.76192 * 126.48644 * 180.02562 * 8 7 6 10 10 C 1.81001 * 100.00087 * 359.97375 * 9 8 7 11 11 C 1.50696 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21281 * 120.00242 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99927 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99933 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47222 * 89.99945 * 14 13 11 16 16 H 1.07994 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99740 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00360 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99469 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47549 * 59.99739 * 19 17 15 21 21 H 1.48495 * 109.47098 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46801 * 299.99549 * 19 17 15 23 23 C 1.46498 * 119.99962 * 359.97438 * 13 11 10 24 24 C 1.53001 * 109.47156 * 90.00180 * 23 13 11 25 25 C 1.47202 * 109.47074 * 180.02562 * 24 23 13 26 26 N 9.56651 * 98.94104 * 25.64298 * 2 1 3 27 27 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47413 * 299.99777 * 1 2 3 29 29 H 1.09004 * 109.47212 * 60.00584 * 1 2 3 30 30 H 1.09000 * 109.47172 * 239.99761 * 2 1 3 31 31 H 1.08999 * 109.46771 * 119.99258 * 2 1 3 32 32 H 1.08994 * 109.46858 * 269.99756 * 5 4 3 33 33 H 1.09001 * 109.46950 * 29.99516 * 5 4 3 34 34 H 1.08998 * 109.46965 * 149.99634 * 5 4 3 35 35 H 1.09000 * 109.46608 * 299.99574 * 10 9 8 36 36 H 1.08995 * 109.46795 * 60.00035 * 10 9 8 37 37 H 1.08999 * 109.47350 * 209.99838 * 14 13 11 38 38 H 1.09000 * 109.47209 * 329.99768 * 14 13 11 39 39 H 0.97000 * 119.99769 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.47005 * 210.00266 * 23 13 11 41 41 H 1.09000 * 109.47039 * 329.99995 * 23 13 11 42 42 H 1.08999 * 109.46798 * 299.99779 * 24 23 13 43 43 H 1.09000 * 109.47298 * 59.99973 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2939 2.1596 -1.0902 5 6 2.1505 1.7558 -2.5350 6 7 2.7028 3.3152 -0.6483 7 7 2.7051 3.3204 0.6369 8 6 2.2946 2.1581 1.0884 9 16 2.1290 1.6899 2.7789 10 6 2.6696 3.2188 3.5829 11 6 2.6098 3.0479 5.0789 12 8 2.2378 1.9961 5.5548 13 7 2.9686 4.0642 5.8882 14 6 2.9100 3.8982 7.3425 15 6 4.2296 3.3682 7.8413 16 1 5.0316 3.1740 7.1445 17 6 4.4127 3.1303 9.1870 18 7 3.4359 3.3663 10.0354 19 14 6.0487 2.4740 9.8053 20 1 7.1290 3.4326 9.4602 21 1 5.9888 2.3045 11.2793 22 1 6.3286 1.1622 9.1677 23 6 3.4174 5.3348 5.3134 24 6 2.2134 6.2575 5.1133 25 6 2.6642 7.5340 4.5352 26 7 3.0168 8.5195 4.0897 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 3.0845 1.3152 -2.8836 33 1 1.3466 1.0259 -2.6302 34 1 1.9165 2.6344 -3.1362 35 1 3.6933 3.4441 3.2839 36 1 2.0151 4.0374 3.2839 37 1 2.7052 4.8613 7.8101 38 1 2.1167 3.1951 7.5963 39 1 3.5647 3.1986 10.9820 40 1 4.1295 5.8081 5.9895 41 1 3.8969 5.1496 4.3522 42 1 1.5014 5.7842 4.4372 43 1 1.7339 6.4427 6.0744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338637038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:59 Heat of formation + Delta-G solvation = 45.858351 kcal Electronic energy + Delta-G solvation = -26080.622697 eV Core-core repulsion = 22288.058579 eV Total energy + Delta-G solvation = -3792.564118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.91486 -40.83092 -38.01844 -36.79783 -36.74531 -34.89500 -33.38450 -32.26030 -31.57439 -31.52367 -28.96127 -28.42306 -25.36769 -25.17681 -24.65485 -23.57093 -21.82209 -20.26273 -18.99208 -18.70132 -18.32568 -18.08804 -17.59607 -17.17423 -16.94938 -16.44740 -16.14973 -15.76264 -15.64492 -15.22568 -14.90372 -14.63335 -14.37828 -14.29798 -14.18228 -13.90848 -13.66141 -13.60980 -13.58615 -13.53418 -13.24159 -13.14149 -12.93390 -12.74734 -12.53977 -12.47052 -12.38764 -12.16231 -11.95788 -11.87028 -11.69239 -11.33544 -11.28604 -10.84427 -10.80485 -10.56757 -9.57905 -8.70780 -8.17232 -6.28922 -0.10167 0.59711 0.88589 1.42349 1.44528 1.50974 1.56856 1.63325 1.70487 1.75815 1.82252 2.21922 2.45053 3.02825 3.15489 3.43391 3.56183 3.61878 3.93190 3.94118 3.99365 3.99801 4.10075 4.28596 4.30114 4.36372 4.54059 4.67212 4.67981 4.73358 4.79695 4.91219 4.98368 5.02342 5.07297 5.11859 5.21168 5.33459 5.56916 5.81114 5.83587 6.12301 6.55327 6.60866 6.79632 7.20892 7.42492 7.56184 8.89534 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003069 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.325737 B = 9119.830755 C =10663.304981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 N -0.459 5.459 4 C 0.189 3.811 5 C -0.064 4.064 6 N -0.335 5.335 7 N -0.327 5.327 8 C 0.135 3.865 9 S 0.071 5.929 10 C -0.134 4.134 11 C 0.526 3.474 12 O -0.567 6.567 13 N -0.586 5.586 14 C 0.261 3.739 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.015 3.985 18 N -0.924 5.924 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.110 3.890 24 C -0.038 4.038 25 C 0.244 3.756 26 N -0.488 5.488 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.041 0.959 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -7.004 -23.537 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.031 4.031 3 N -0.153 5.153 4 C -0.081 4.081 5 C -0.123 4.123 6 N -0.175 5.175 7 N -0.170 5.170 8 C -0.241 4.241 9 S 0.298 5.702 10 C -0.285 4.285 11 C 0.312 3.688 12 O -0.447 6.447 13 N -0.316 5.316 14 C 0.140 3.860 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.208 1.208 22 H -0.204 1.204 23 C -0.015 4.015 24 C -0.079 4.079 25 C -0.073 4.073 26 N -0.166 5.166 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.152 0.848 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.150 0.850 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.084 -5.681 -23.267 24.711 hybrid contribution 0.719 -0.552 0.636 1.107 sum -5.365 -6.233 -22.631 24.079 Atomic orbital electron populations 1.22157 0.92460 1.05024 1.02789 1.22380 0.97011 0.76682 1.06990 1.46796 1.49687 1.14892 1.03917 1.25958 1.00260 0.87848 0.94064 1.20487 1.05321 1.04271 0.82207 1.73837 1.20669 1.19865 1.03125 1.74550 1.21108 1.17501 1.03887 1.27223 1.06504 0.92625 0.97716 1.86216 1.82979 1.17120 0.83906 1.23761 1.09121 1.01373 0.94258 1.19892 0.77567 0.83789 0.87566 1.90715 1.48789 1.27938 1.77233 1.47954 1.63619 1.12415 1.07615 1.18914 0.95865 0.96935 0.74301 1.21713 0.99657 1.44053 0.92727 0.92759 1.25671 1.00088 0.95672 0.97072 1.70003 1.33564 1.49433 1.03365 0.85651 0.80235 0.78938 0.77104 1.19008 1.20774 1.20391 1.21587 0.95646 0.83173 1.01072 1.19831 0.99590 0.84691 1.03782 1.29216 0.92112 0.94196 0.91820 1.81308 1.10108 1.13573 1.11657 0.87542 0.93342 0.91213 0.84844 0.88374 0.87863 0.87507 0.88233 0.85050 0.83922 0.94151 0.97043 0.92520 0.88986 0.88090 0.85036 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.24 71.98 0.74 -0.71 16 2 C 0.09 0.95 6.48 86.38 0.56 1.51 16 3 N -0.46 -8.87 2.81 -513.12 -1.44 -10.31 16 4 C 0.19 3.75 8.07 137.63 1.11 4.86 16 5 C -0.06 -0.52 10.09 71.24 0.72 0.19 16 6 N -0.33 -9.61 12.18 -49.52 -0.60 -10.21 16 7 N -0.33 -9.91 11.60 -56.86 -0.66 -10.57 16 8 C 0.14 3.51 8.07 179.55 1.45 4.95 16 9 S 0.07 1.90 20.94 -56.49 -1.18 0.71 16 10 C -0.13 -3.58 4.27 71.23 0.30 -3.27 16 11 C 0.53 18.77 7.69 87.66 0.67 19.45 16 12 O -0.57 -25.57 15.44 -3.03 -0.05 -25.62 16 13 N -0.59 -20.75 2.46 -826.15 -2.03 -22.78 16 14 C 0.26 12.21 5.16 85.64 0.44 12.65 16 15 C -0.54 -28.72 9.39 25.60 0.24 -28.48 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 17 C 0.01 0.79 5.46 84.66 0.46 1.25 16 18 N -0.92 -52.65 13.29 21.45 0.28 -52.36 16 19 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 C 0.11 2.80 5.17 86.38 0.45 3.25 16 24 C -0.04 -0.75 6.03 28.79 0.17 -0.58 16 25 C 0.24 5.92 15.44 89.42 1.38 7.30 16 26 N -0.49 -14.89 18.55 20.02 0.37 -14.52 16 27 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.13 0.49 7.88 -2.39 -0.02 0.47 16 31 H 0.10 1.13 7.86 -2.39 -0.02 1.11 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.26 7.93 -2.39 -0.02 0.24 16 34 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.13 3.30 7.40 -2.40 -0.02 3.29 16 36 H 0.14 3.14 7.18 -2.40 -0.02 3.12 16 37 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 38 H 0.01 0.62 7.42 -2.39 -0.02 0.61 16 39 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.09 2.51 8.07 -2.38 -0.02 2.49 16 41 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 42 H 0.13 2.02 7.22 -2.39 -0.02 2.00 16 43 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -79.89 390.11 6.45 -73.44 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 1.03 Total: 4.71 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: 8.70 Total: 22.37 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -4.08 Total: -120.75 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.18 Total: 0.71 kcal Total: -79.89 6.45 -73.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338637038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.301 kcal (2) G-P(sol) polarization free energy of solvation -79.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds