Wall clock time and date at job start Tue Mar 31 2020 22:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47128 * 2 1 4 4 C 1.35991 * 117.00033 * 179.97438 * 3 2 1 5 5 C 1.38509 * 120.03978 * 0.02562 * 4 3 2 6 6 C 1.38801 * 119.93769 * 179.97438 * 5 4 3 7 7 N 1.40140 * 119.99918 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00009 * 213.31302 * 7 6 5 9 9 O 1.21598 * 120.00231 * 5.32063 * 8 7 6 10 10 N 1.34777 * 120.00309 * 185.31476 * 8 7 6 11 11 C 1.46498 * 120.00284 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46973 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00058 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99868 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99977 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00134 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00248 * 180.02562 * 15 14 12 18 18 N 1.31418 * 119.99625 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47283 * 119.99797 * 19 17 15 22 22 H 1.48508 * 109.46810 * 239.99721 * 19 17 15 23 23 C 1.38830 * 120.00504 * 0.02730 * 6 5 4 24 24 C 1.38199 * 120.07496 * 359.67376 * 23 6 5 25 25 C 1.38548 * 120.06760 * 0.59998 * 24 23 6 26 26 O 1.36068 * 120.00723 * 179.69679 * 25 24 23 27 27 C 1.42896 * 116.99776 * 359.72458 * 26 25 24 28 28 H 1.08996 * 109.47026 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.46661 * 59.99683 * 1 2 3 30 30 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47366 * 240.00237 * 2 1 3 32 32 H 1.08998 * 109.47292 * 119.99901 * 2 1 3 33 33 H 1.08004 * 120.03234 * 359.95636 * 5 4 3 34 34 H 0.96997 * 119.99756 * 33.31374 * 7 6 5 35 35 H 0.97000 * 119.99618 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46833 * 299.99912 * 11 10 8 37 37 H 1.09001 * 109.47200 * 59.99951 * 11 10 8 38 38 H 0.97001 * 120.00386 * 0.02562 * 14 12 11 39 39 H 0.96992 * 119.99536 * 179.97438 * 18 17 15 40 40 H 1.07998 * 119.96500 * 179.97438 * 23 6 5 41 41 H 1.08004 * 119.96683 * 180.31905 * 24 23 6 42 42 H 1.09001 * 109.47050 * 59.99981 * 27 26 25 43 43 H 1.09004 * 109.47566 * 179.97438 * 27 26 25 44 44 H 1.09005 * 109.47586 * 300.00075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1990 0.4276 0.0005 6 6 5.5747 0.6119 0.0005 7 7 6.4304 -0.4980 0.0000 8 6 7.6143 -0.4364 0.6410 9 8 7.8986 0.5451 1.3001 10 7 8.4833 -1.4628 0.5515 11 6 9.7700 -1.3961 1.2487 12 6 10.5487 -2.6596 0.9879 13 8 10.0752 -3.5305 0.2889 14 7 11.7712 -2.8221 1.5315 15 6 12.4794 -3.9719 1.2947 16 1 12.0575 -4.7476 0.6729 17 6 13.7396 -4.1396 1.8555 18 7 14.2528 -3.1959 2.6125 19 14 14.7048 -5.7059 1.5322 20 1 13.9119 -6.6039 0.6547 21 1 15.9879 -5.3680 0.8654 22 1 14.9818 -6.3913 2.8202 23 6 6.1032 1.8957 0.0011 24 6 5.2609 2.9913 -0.0051 25 6 3.8873 2.8109 0.0006 26 8 3.0591 3.8906 0.0007 27 6 3.6746 5.1802 0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7875 -0.5710 0.0008 34 1 6.1705 -1.3104 -0.4618 35 1 8.2567 -2.2456 0.0255 36 1 10.3365 -0.5389 0.8847 37 1 9.5978 -1.2894 2.3198 38 1 12.1497 -2.1259 2.0909 39 1 15.1323 -3.3132 3.0043 40 1 7.1737 2.0383 0.0016 41 1 5.6739 3.9893 -0.0098 42 1 4.2949 5.2869 -0.8891 43 1 2.9037 5.9508 0.0005 44 1 4.2949 5.2868 0.8909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348795659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:01 Heat of formation + Delta-G solvation = -108.554445 kcal Electronic energy + Delta-G solvation = -27876.365314 eV Core-core repulsion = 23602.059733 eV Total energy + Delta-G solvation = -4274.305581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99622 -40.02164 -38.70127 -38.39440 -37.12030 -34.51453 -34.29060 -33.71957 -32.09692 -31.41996 -30.24123 -29.28907 -27.76212 -26.78200 -24.57847 -24.20292 -22.76036 -21.75307 -20.76084 -19.68520 -18.83069 -18.61678 -18.09587 -17.74998 -16.64927 -16.47013 -16.31841 -15.67899 -15.63702 -15.52222 -14.96317 -14.75142 -14.66285 -14.47441 -14.15046 -14.11554 -13.56994 -13.50730 -13.19905 -12.90996 -12.85962 -12.48152 -12.27775 -12.25070 -12.05364 -11.66873 -11.57887 -11.49873 -11.25835 -11.17018 -11.03770 -10.43807 -10.36321 -10.18575 -9.81897 -9.68481 -8.94244 -8.71765 -8.68271 -8.14083 -7.60308 -6.55065 -3.97206 1.08741 1.30269 2.56455 2.96016 3.07352 3.12818 3.13874 3.20373 3.26895 3.65847 3.70991 4.03780 4.24609 4.54781 4.61939 4.71451 4.80711 4.82812 4.90976 4.96312 4.97201 5.10885 5.13551 5.15353 5.26571 5.29245 5.37626 5.47349 5.59583 5.72578 5.82658 5.92320 6.01425 6.12827 6.18955 6.27600 6.59956 6.70652 6.85941 6.95795 7.41539 7.42918 7.88445 8.01650 8.40520 8.57944 9.00949 9.35143 9.82596 10.61786 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.001840 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.012190 B =15217.278757 C =16262.182612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.304 6.304 4 C 0.121 3.879 5 C -0.205 4.205 6 C 0.180 3.820 7 N -0.687 5.687 8 C 0.704 3.296 9 O -0.578 6.578 10 N -0.718 5.718 11 C 0.127 3.873 12 C 0.427 3.573 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.116 4.116 24 C -0.150 4.150 25 C 0.076 3.924 26 O -0.309 6.309 27 C 0.027 3.973 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.408 0.592 35 H 0.409 0.591 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.274 0.726 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.535 11.656 -5.372 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.218 6.218 4 C 0.075 3.925 5 C -0.226 4.226 6 C 0.085 3.915 7 N -0.335 5.335 8 C 0.404 3.596 9 O -0.456 6.456 10 N -0.375 5.375 11 C -0.001 4.001 12 C 0.213 3.787 13 O -0.485 6.485 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.533 5.533 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.137 4.137 24 C -0.169 4.169 25 C 0.030 3.970 26 O -0.223 6.223 27 C -0.069 4.069 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.243 0.757 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.084 0.916 40 H 0.161 0.839 41 H 0.155 0.845 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.641 12.054 -5.116 26.155 hybrid contribution 0.993 -1.231 -0.135 1.587 sum -21.648 10.823 -5.251 24.766 Atomic orbital electron populations 1.21755 0.92743 1.02751 1.03540 1.22797 0.95937 0.82215 1.01392 1.86171 1.17918 1.28732 1.88998 1.17776 0.82775 0.90565 1.01364 1.20667 0.91967 0.98191 1.11823 1.17074 0.87939 0.86722 0.99809 1.42579 1.18119 1.16064 1.56693 1.15811 0.79980 0.83756 0.80046 1.90934 1.77064 1.32591 1.44972 1.44779 1.17476 1.20566 1.54633 1.20843 0.83334 0.98235 0.97668 1.19718 0.83940 0.88872 0.86168 1.90495 1.70078 1.44610 1.43324 1.41791 1.13963 1.18935 1.43557 1.19780 0.98086 0.95984 1.29607 0.87597 1.25342 0.97179 0.99162 0.96070 1.69623 1.18318 1.33363 1.32042 0.85749 0.79168 0.80834 0.78281 1.19134 1.20589 1.20599 1.20949 1.01254 0.89977 1.01509 1.20947 0.90746 1.00084 1.05123 1.18169 0.88921 0.85284 1.04635 1.86153 1.33749 1.12917 1.89502 1.23041 0.99755 0.82783 1.01284 0.91519 0.91537 0.90423 0.92062 0.92020 0.84507 0.75697 0.75365 0.89743 0.89763 0.76986 0.91596 0.83886 0.84469 0.92792 0.88428 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.41 5.46 37.16 0.20 0.61 16 3 O -0.30 -3.51 9.92 -34.31 -0.34 -3.85 16 4 C 0.12 1.47 6.70 -39.14 -0.26 1.21 16 5 C -0.20 -2.27 8.95 -39.27 -0.35 -2.62 16 6 C 0.18 2.28 6.28 -83.63 -0.53 1.75 16 7 N -0.69 -8.39 5.35 -14.20 -0.08 -8.47 16 8 C 0.70 10.98 8.30 -86.92 -0.72 10.26 16 9 O -0.58 -10.69 14.03 5.28 0.07 -10.62 16 10 N -0.72 -11.44 5.53 -66.41 -0.37 -11.81 16 11 C 0.13 2.27 6.15 -5.20 -0.03 2.24 16 12 C 0.43 9.54 7.85 -10.99 -0.09 9.45 16 13 O -0.60 -14.90 15.24 5.55 0.08 -14.82 16 14 N -0.55 -13.31 5.29 -10.96 -0.06 -13.37 16 15 C -0.31 -8.16 9.68 -14.93 -0.14 -8.31 16 16 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 18 N -0.89 -23.56 13.05 55.50 0.72 -22.84 16 19 Si 0.93 20.27 29.55 -169.99 -5.02 15.25 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.12 -1.53 8.65 -39.38 -0.34 -1.87 16 24 C -0.15 -1.72 9.03 -39.48 -0.36 -2.08 16 25 C 0.08 0.93 6.70 -39.13 -0.26 0.67 16 26 O -0.31 -3.60 10.28 -34.56 -0.36 -3.96 16 27 C 0.03 0.19 9.81 101.05 0.99 1.19 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 33 H 0.14 1.18 6.30 -52.48 -0.33 0.85 16 34 H 0.41 3.74 8.83 -40.82 -0.36 3.38 16 35 H 0.41 6.26 7.46 -40.82 -0.30 5.96 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.40 9.26 7.90 -40.82 -0.32 8.94 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.14 2.07 6.40 -52.49 -0.34 1.73 16 41 H 0.14 1.25 6.29 -52.48 -0.33 0.92 16 42 H 0.05 0.33 7.65 -51.93 -0.40 -0.06 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -33.20 377.05 -6.88 -40.08 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -5.62 Total: 16.19 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.60 Total: 12.52 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.22 Total: -56.48 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.54 Total: -33.24 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.20 -6.88 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348795659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.473 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds