Wall clock time and date at job start Tue Mar 31 2020 22:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47128 * 2 1 4 4 C 1.35991 * 117.00033 * 179.97438 * 3 2 1 5 5 C 1.38509 * 120.03978 * 0.02562 * 4 3 2 6 6 C 1.38801 * 119.93769 * 179.97438 * 5 4 3 7 7 N 1.40140 * 119.99918 * 180.02562 * 6 5 4 8 8 C 1.34773 * 120.00009 * 213.31302 * 7 6 5 9 9 O 1.21598 * 120.00231 * 5.32063 * 8 7 6 10 10 N 1.34777 * 120.00309 * 185.31476 * 8 7 6 11 11 C 1.46498 * 120.00284 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.46973 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00058 * 359.97438 * 12 11 10 14 14 N 1.34775 * 119.99868 * 179.97438 * 12 11 10 15 15 C 1.37098 * 119.99977 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00134 * 359.97438 * 15 14 12 17 17 C 1.38953 * 120.00248 * 180.02562 * 15 14 12 18 18 N 1.31418 * 119.99625 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00209 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47254 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47283 * 119.99797 * 19 17 15 22 22 H 1.48508 * 109.46810 * 239.99721 * 19 17 15 23 23 C 1.38830 * 120.00504 * 0.02730 * 6 5 4 24 24 C 1.38199 * 120.07496 * 359.67376 * 23 6 5 25 25 C 1.38548 * 120.06760 * 0.59998 * 24 23 6 26 26 O 1.36068 * 120.00723 * 179.69679 * 25 24 23 27 27 C 1.42896 * 116.99776 * 359.72458 * 26 25 24 28 28 H 1.08996 * 109.47026 * 299.99948 * 1 2 3 29 29 H 1.08999 * 109.46661 * 59.99683 * 1 2 3 30 30 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47366 * 240.00237 * 2 1 3 32 32 H 1.08998 * 109.47292 * 119.99901 * 2 1 3 33 33 H 1.08004 * 120.03234 * 359.95636 * 5 4 3 34 34 H 0.96997 * 119.99756 * 33.31374 * 7 6 5 35 35 H 0.97000 * 119.99618 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46833 * 299.99912 * 11 10 8 37 37 H 1.09001 * 109.47200 * 59.99951 * 11 10 8 38 38 H 0.97001 * 120.00386 * 0.02562 * 14 12 11 39 39 H 0.96992 * 119.99536 * 179.97438 * 18 17 15 40 40 H 1.07998 * 119.96500 * 179.97438 * 23 6 5 41 41 H 1.08004 * 119.96683 * 180.31905 * 24 23 6 42 42 H 1.09001 * 109.47050 * 59.99981 * 27 26 25 43 43 H 1.09004 * 109.47566 * 179.97438 * 27 26 25 44 44 H 1.09005 * 109.47586 * 300.00075 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1990 0.4276 0.0005 6 6 5.5747 0.6119 0.0005 7 7 6.4304 -0.4980 0.0000 8 6 7.6143 -0.4364 0.6410 9 8 7.8986 0.5451 1.3001 10 7 8.4833 -1.4628 0.5515 11 6 9.7700 -1.3961 1.2487 12 6 10.5487 -2.6596 0.9879 13 8 10.0752 -3.5305 0.2889 14 7 11.7712 -2.8221 1.5315 15 6 12.4794 -3.9719 1.2947 16 1 12.0575 -4.7476 0.6729 17 6 13.7396 -4.1396 1.8555 18 7 14.2528 -3.1959 2.6125 19 14 14.7048 -5.7059 1.5322 20 1 13.9119 -6.6039 0.6547 21 1 15.9879 -5.3680 0.8654 22 1 14.9818 -6.3913 2.8202 23 6 6.1032 1.8957 0.0011 24 6 5.2609 2.9913 -0.0051 25 6 3.8873 2.8109 0.0006 26 8 3.0591 3.8906 0.0007 27 6 3.6746 5.1802 0.0009 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7875 -0.5710 0.0008 34 1 6.1705 -1.3104 -0.4618 35 1 8.2567 -2.2456 0.0255 36 1 10.3365 -0.5389 0.8847 37 1 9.5978 -1.2894 2.3198 38 1 12.1497 -2.1259 2.0909 39 1 15.1323 -3.3132 3.0043 40 1 7.1737 2.0383 0.0016 41 1 5.6739 3.9893 -0.0098 42 1 4.2949 5.2869 -0.8891 43 1 2.9037 5.9508 0.0005 44 1 4.2949 5.2868 0.8909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348795659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:58 Heat of formation + Delta-G solvation = -132.986374 kcal Electronic energy + Delta-G solvation = -27877.424762 eV Core-core repulsion = 23602.059733 eV Total energy + Delta-G solvation = -4275.365029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.98628 -41.12966 -40.11938 -39.48246 -38.14345 -36.24712 -35.44300 -35.18736 -33.36955 -32.72173 -31.14005 -30.22860 -29.01151 -27.73059 -26.36153 -24.88927 -23.79592 -22.52743 -21.90297 -21.38475 -20.15637 -19.74133 -19.66604 -18.69799 -17.69207 -17.38761 -17.29968 -17.15991 -16.83671 -16.47161 -16.35032 -16.18657 -15.81931 -15.67864 -15.53624 -15.19044 -15.14796 -14.29197 -14.03497 -13.96266 -13.76267 -13.63600 -13.54831 -13.40041 -13.15373 -12.96528 -12.91261 -12.44137 -12.35312 -12.18086 -12.11077 -12.04497 -11.66593 -11.57686 -11.44817 -10.83381 -10.56121 -10.24828 -10.08417 -9.62290 -8.53347 -8.50997 -6.00993 0.19065 0.35483 1.35390 1.38198 1.44984 1.58071 1.88391 1.97530 2.22767 2.28337 2.39361 2.72100 2.96964 3.16456 3.22132 3.76958 4.01866 4.07597 4.09368 4.18750 4.21095 4.26316 4.39502 4.41252 4.44404 4.45409 4.45881 4.50064 4.68413 4.77511 4.88192 4.97537 5.14818 5.20980 5.25456 5.30355 5.34942 5.39286 5.73311 5.87150 5.92696 6.12673 6.47998 6.60654 6.87258 7.03919 7.35446 7.45556 7.94515 8.66039 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.022593 B = 0.001840 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.012190 B =15217.278757 C =16262.182612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.321 6.321 4 C 0.111 3.889 5 C -0.195 4.195 6 C 0.163 3.837 7 N -0.670 5.670 8 C 0.706 3.294 9 O -0.608 6.608 10 N -0.716 5.716 11 C 0.141 3.859 12 C 0.434 3.566 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.336 4.336 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.272 1.272 23 C -0.133 4.133 24 C -0.148 4.148 25 C 0.067 3.933 26 O -0.328 6.328 27 C 0.017 3.983 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.162 0.838 34 H 0.423 0.577 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.399 0.601 39 H 0.280 0.720 40 H 0.127 0.873 41 H 0.157 0.843 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.492 11.523 -5.630 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.235 6.235 4 C 0.064 3.936 5 C -0.216 4.216 6 C 0.068 3.932 7 N -0.319 5.319 8 C 0.407 3.593 9 O -0.487 6.487 10 N -0.373 5.373 11 C 0.013 3.987 12 C 0.221 3.779 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.465 4.465 16 H 0.105 0.895 17 C -0.212 4.212 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.154 4.154 24 C -0.167 4.167 25 C 0.021 3.979 26 O -0.242 6.242 27 C -0.077 4.077 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.261 0.739 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.175 0.825 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.638 11.929 -5.392 27.021 hybrid contribution 1.139 -1.097 -0.081 1.584 sum -22.500 10.831 -5.473 25.564 Atomic orbital electron populations 1.21786 0.91525 1.04088 1.03114 1.23108 0.96982 0.80866 1.02364 1.86166 1.17502 1.30974 1.88894 1.18013 0.83353 0.90913 1.01289 1.20809 0.91058 0.99199 1.10513 1.17217 0.88559 0.86510 1.00913 1.42342 1.16903 1.16732 1.55965 1.15829 0.80563 0.83006 0.79937 1.90919 1.77854 1.33585 1.46368 1.44652 1.16984 1.20962 1.54712 1.20639 0.83722 0.95796 0.98560 1.20396 0.83330 0.89693 0.84503 1.90474 1.70568 1.46053 1.44101 1.41836 1.14678 1.18644 1.44303 1.19771 0.99234 0.96764 1.30732 0.89512 1.26130 0.97541 1.02068 0.95476 1.69686 1.18808 1.34714 1.32366 0.84811 0.77729 0.77133 0.78306 1.19399 1.19707 1.19723 1.20937 1.00682 0.90966 1.02769 1.21091 0.90482 1.00635 1.04475 1.18402 0.89226 0.85888 1.04377 1.86132 1.34642 1.14063 1.89398 1.23334 1.00835 0.81420 1.02122 0.92100 0.91805 0.88183 0.90694 0.91329 0.82071 0.73877 0.74901 0.88598 0.88727 0.76656 0.91095 0.85526 0.82528 0.91676 0.86343 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.04 0.57 5.46 71.98 0.39 0.97 16 3 O -0.32 -7.06 9.92 -79.48 -0.79 -7.85 16 4 C 0.11 2.57 6.70 22.55 0.15 2.73 16 5 C -0.19 -4.02 8.95 22.47 0.20 -3.82 16 6 C 0.16 3.98 6.28 38.09 0.24 4.22 16 7 N -0.67 -15.61 5.35 -317.10 -1.70 -17.30 16 8 C 0.71 21.46 8.30 179.06 1.49 22.95 16 9 O -0.61 -22.23 14.03 -4.02 -0.06 -22.29 16 10 N -0.72 -22.18 5.53 -482.29 -2.67 -24.85 16 11 C 0.14 4.93 6.15 85.63 0.53 5.46 16 12 C 0.43 19.36 7.85 87.66 0.69 20.04 16 13 O -0.62 -31.18 15.24 -3.07 -0.05 -31.23 16 14 N -0.56 -27.43 5.29 -306.98 -1.62 -29.05 16 15 C -0.34 -18.18 9.68 84.04 0.81 -17.36 16 16 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 17 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 18 N -0.92 -48.06 13.05 21.66 0.28 -47.78 16 19 Si 1.00 41.23 29.55 68.60 2.03 43.26 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 C -0.13 -3.47 8.65 22.40 0.19 -3.27 16 24 C -0.15 -3.31 9.03 22.33 0.20 -3.11 16 25 C 0.07 1.59 6.70 22.56 0.15 1.75 16 26 O -0.33 -7.35 10.28 -80.36 -0.83 -8.17 16 27 C 0.02 0.23 9.81 113.37 1.11 1.34 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 32 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 33 H 0.16 2.39 6.30 -2.91 -0.02 2.37 16 34 H 0.42 7.05 8.83 -92.71 -0.82 6.23 16 35 H 0.41 12.27 7.46 -92.71 -0.69 11.58 16 36 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 39 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 40 H 0.13 3.72 6.40 -2.91 -0.02 3.70 16 41 H 0.16 2.70 6.29 -2.91 -0.02 2.68 16 42 H 0.06 0.71 7.65 -2.39 -0.02 0.69 16 43 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 0.72 7.67 -2.38 -0.02 0.71 16 Total: -1.00 -71.06 377.05 0.81 -70.25 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -1.16 Total: 44.09 kcal Atomic # 6 Polarization: 23.57 SS G_CDS: 7.37 Total: 30.94 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -5.71 Total: -118.99 kcal Atomic # 8 Polarization: -67.83 SS G_CDS: -1.72 Total: -69.54 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -71.06 0.81 -70.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348795659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.739 kcal (2) G-P(sol) polarization free energy of solvation -71.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds