Wall clock time and date at job start Tue Mar 31 2020 22:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47102 * 2 1 4 4 C 1.36055 * 117.00019 * 179.97438 * 3 2 1 5 5 C 1.38511 * 120.02889 * 0.29819 * 4 3 2 6 6 C 1.38241 * 120.06771 * 180.27272 * 5 4 3 7 7 C 1.38715 * 120.11971 * 359.44999 * 6 5 4 8 8 O 1.35976 * 119.97264 * 180.27139 * 7 6 5 9 9 C 1.42897 * 117.00235 * 0.02562 * 8 7 6 10 10 C 1.38630 * 120.05163 * 0.25423 * 7 6 5 11 11 C 1.38690 * 119.92877 * 0.02562 * 10 7 6 12 12 N 1.40153 * 120.05440 * 180.02562 * 11 10 7 13 13 C 1.34780 * 120.00109 * 24.78271 * 12 11 10 14 14 O 1.21591 * 119.99842 * 5.62979 * 13 12 11 15 15 N 1.34776 * 119.99776 * 185.63407 * 13 12 11 16 16 C 1.46505 * 119.99883 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47001 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00164 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99476 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00249 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99740 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46836 * 90.00415 * 24 22 20 26 26 H 1.48503 * 109.47061 * 210.00215 * 24 22 20 27 27 H 1.48497 * 109.47340 * 330.00658 * 24 22 20 28 28 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46989 * 300.00282 * 1 2 3 30 30 H 1.08996 * 109.47145 * 60.00562 * 1 2 3 31 31 H 1.08996 * 109.47342 * 239.99618 * 2 1 3 32 32 H 1.09006 * 109.46904 * 119.99937 * 2 1 3 33 33 H 1.07996 * 119.96524 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.94033 * 179.72022 * 6 5 4 35 35 H 1.09004 * 109.47009 * 59.99718 * 9 8 7 36 36 H 1.09002 * 109.47378 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47450 * 299.99650 * 9 8 7 38 38 H 1.07999 * 120.03081 * 180.02562 * 10 7 6 39 39 H 0.96999 * 120.00063 * 204.77990 * 12 11 10 40 40 H 0.97001 * 120.00248 * 359.97438 * 15 13 12 41 41 H 1.09000 * 109.47001 * 300.00325 * 16 15 13 42 42 H 1.09000 * 109.46874 * 60.00136 * 16 15 13 43 43 H 0.96998 * 120.00449 * 0.02562 * 19 17 16 44 44 H 0.96998 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3552 1.5256 0.0005 5 6 4.1995 0.4276 -0.0052 6 6 5.5701 0.6077 0.0011 7 6 6.1039 1.8881 0.0015 8 8 7.4525 2.0618 0.0021 9 6 8.2586 0.8820 0.0016 10 6 5.2634 2.9906 0.0011 11 6 3.8881 2.8122 0.0007 12 7 3.0360 3.9250 -0.0003 13 6 3.4678 5.1040 -0.4901 14 8 4.5578 5.1780 -1.0239 15 7 2.6914 6.2010 -0.3882 16 6 3.1611 7.4827 -0.9201 17 6 2.1138 8.5398 -0.6812 18 8 1.0770 8.2508 -0.1220 19 7 2.3290 9.8060 -1.0898 20 6 1.3761 10.7675 -0.8728 21 1 0.4532 10.5104 -0.3742 22 6 1.5976 12.0728 -1.2945 23 7 0.6844 12.9945 -1.0861 24 14 3.1941 12.5176 -2.1563 25 1 3.0333 12.3352 -3.6212 26 1 3.5341 13.9343 -1.8682 27 1 4.2841 11.6371 -1.6646 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7866 -0.5704 -0.0105 34 1 6.2265 -0.2499 0.0012 35 1 8.0396 0.2926 -0.8889 36 1 9.3122 1.1617 0.0017 37 1 8.0392 0.2915 0.8911 38 1 5.6794 3.9873 0.0011 39 1 2.1354 3.8466 0.3515 40 1 1.8218 6.1419 0.0373 41 1 4.0861 7.7672 -0.4187 42 1 3.3426 7.3872 -1.9906 43 1 3.1577 10.0368 -1.5379 44 1 0.8389 13.9056 -1.3808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349384623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:24 Heat of formation + Delta-G solvation = -99.462716 kcal Electronic energy + Delta-G solvation = -28273.503962 eV Core-core repulsion = 23999.592628 eV Total energy + Delta-G solvation = -4273.911334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08564 -39.85182 -39.19735 -38.46285 -36.73274 -34.62382 -34.48996 -33.79319 -32.01135 -31.80370 -30.55613 -29.04688 -27.48689 -27.22270 -24.61300 -24.26729 -22.41266 -21.96750 -20.69953 -19.66584 -18.97430 -18.84922 -18.07804 -17.99538 -16.65370 -16.45372 -16.32122 -15.85025 -15.63284 -15.52597 -15.09660 -14.88560 -14.71036 -14.34585 -14.16333 -13.99934 -13.56673 -13.50103 -13.13554 -12.98893 -12.70655 -12.57771 -12.51024 -12.47473 -12.17836 -12.17053 -11.76272 -11.53281 -11.23359 -11.22508 -10.78219 -10.63612 -10.36764 -10.06216 -9.96617 -9.69733 -8.98365 -8.77884 -8.44196 -8.30438 -7.69739 -6.40537 -3.93230 1.07985 1.28546 2.50732 2.90083 3.00489 3.05296 3.10865 3.13396 3.18391 3.55942 3.67874 4.03985 4.18950 4.46545 4.57330 4.59248 4.66986 4.75674 4.82380 4.89785 4.90513 4.95941 5.14410 5.20837 5.24081 5.29071 5.46313 5.53173 5.67423 5.69661 5.75426 5.78848 5.82758 5.95178 6.08750 6.22856 6.54018 6.60900 6.92631 7.10527 7.33004 7.44835 7.97860 8.02930 8.43628 8.56617 8.81764 9.29822 9.63095 10.71554 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.002340 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.366507 B =11965.036994 C =13830.767341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.060 3.940 5 C -0.148 4.148 6 C -0.197 4.197 7 C 0.116 3.884 8 O -0.313 6.313 9 C 0.029 3.971 10 C -0.131 4.131 11 C 0.192 3.808 12 N -0.675 5.675 13 C 0.705 3.295 14 O -0.577 6.577 15 N -0.717 5.717 16 C 0.125 3.875 17 C 0.438 3.562 18 O -0.579 6.579 19 N -0.576 5.576 20 C -0.310 4.310 21 H 0.122 0.878 22 C 0.045 3.955 23 N -0.874 5.874 24 Si 0.879 3.121 25 H -0.269 1.269 26 H -0.275 1.275 27 H -0.266 1.266 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.165 0.835 39 H 0.415 0.585 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.375 0.625 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 -28.810 2.042 30.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.232 6.232 4 C 0.013 3.987 5 C -0.167 4.167 6 C -0.216 4.216 7 C 0.070 3.930 8 O -0.227 6.227 9 C -0.067 4.067 10 C -0.152 4.152 11 C 0.095 3.905 12 N -0.321 5.321 13 C 0.405 3.595 14 O -0.455 6.455 15 N -0.374 5.374 16 C -0.004 4.004 17 C 0.224 3.776 18 O -0.463 6.463 19 N -0.213 5.213 20 C -0.438 4.438 21 H 0.139 0.861 22 C -0.159 4.159 23 N -0.513 5.513 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.183 0.817 39 H 0.251 0.749 40 H 0.248 0.752 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.208 0.792 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.514 -28.230 1.910 29.851 hybrid contribution 0.425 -0.081 -0.377 0.574 sum 9.939 -28.311 1.533 30.044 Atomic orbital electron populations 1.21782 0.92700 1.02792 1.03769 1.22729 0.95842 0.81982 1.01121 1.86026 1.18278 1.29197 1.89749 1.18428 0.82914 0.92159 1.05224 1.20715 0.93152 0.97449 1.05430 1.20934 0.95441 0.95985 1.09289 1.18653 0.82934 0.92928 0.98474 1.86113 1.14267 1.33306 1.89012 1.23026 0.95109 0.87427 1.01090 1.20501 0.89643 1.00187 1.04904 1.16443 0.88990 0.83195 1.01881 1.42410 1.17329 1.07743 1.64635 1.15798 0.84309 0.80076 0.79305 1.90892 1.21079 1.84579 1.48915 1.44755 1.22331 1.06984 1.63342 1.20870 0.97159 0.82180 1.00166 1.19615 0.88919 0.83537 0.85528 1.90540 1.28379 1.80552 1.46853 1.42108 1.18490 1.08072 1.52648 1.19437 0.99670 0.87447 1.37294 0.86075 1.25068 0.97907 0.95443 0.97492 1.69615 1.33726 1.02701 1.45259 0.86670 0.82984 0.79264 0.80586 1.19385 1.19990 1.19153 0.90476 0.91397 0.91383 0.92222 0.92224 0.85009 0.85345 0.92812 0.88353 0.92829 0.81738 0.74916 0.75165 0.89538 0.89589 0.79194 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.41 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.34 9.55 -19.91 -0.19 -3.53 16 4 C 0.06 0.69 6.70 -39.10 -0.26 0.43 16 5 C -0.15 -1.42 9.03 -39.48 -0.36 -1.78 16 6 C -0.20 -1.94 9.03 -39.40 -0.36 -2.29 16 7 C 0.12 1.43 6.68 -39.26 -0.26 1.17 16 8 O -0.31 -3.70 10.50 -19.66 -0.21 -3.91 16 9 C 0.03 0.20 9.81 101.05 0.99 1.19 16 10 C -0.13 -1.88 8.65 -39.27 -0.34 -2.22 16 11 C 0.19 2.60 6.44 -83.50 -0.54 2.06 16 12 N -0.67 -9.05 5.29 -14.12 -0.07 -9.13 16 13 C 0.70 11.27 8.37 -86.92 -0.73 10.54 16 14 O -0.58 -10.67 13.51 5.29 0.07 -10.60 16 15 N -0.72 -11.52 5.53 -66.41 -0.37 -11.88 16 16 C 0.12 2.15 6.15 -5.19 -0.03 2.12 16 17 C 0.44 9.57 7.85 -10.98 -0.09 9.49 16 18 O -0.58 -14.53 15.24 5.55 0.08 -14.44 16 19 N -0.58 -13.33 5.09 -10.96 -0.06 -13.39 16 20 C -0.31 -8.52 10.16 -14.93 -0.15 -8.68 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.95 13.96 55.50 0.77 -24.17 16 24 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 32 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 33 H 0.13 0.90 6.29 -52.49 -0.33 0.57 16 34 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 35 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 38 H 0.17 2.70 5.79 -52.49 -0.30 2.39 16 39 H 0.41 4.70 8.36 -40.82 -0.34 4.36 16 40 H 0.41 6.44 7.46 -40.82 -0.30 6.13 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 44 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -34.02 372.40 -6.23 -40.25 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -5.53 Total: 17.66 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -1.63 Total: 13.24 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.28 Total: -58.57 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.24 Total: -32.47 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.02 -6.23 -40.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349384623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.216 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds