Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47102 * 2 1 4 4 C 1.36055 * 117.00019 * 179.97438 * 3 2 1 5 5 C 1.38511 * 120.02889 * 0.29819 * 4 3 2 6 6 C 1.38241 * 120.06771 * 180.27272 * 5 4 3 7 7 C 1.38715 * 120.11971 * 359.44999 * 6 5 4 8 8 O 1.35976 * 119.97264 * 180.27139 * 7 6 5 9 9 C 1.42897 * 117.00235 * 0.02562 * 8 7 6 10 10 C 1.38630 * 120.05163 * 0.25423 * 7 6 5 11 11 C 1.38690 * 119.92877 * 0.02562 * 10 7 6 12 12 N 1.40153 * 120.05440 * 180.02562 * 11 10 7 13 13 C 1.34780 * 120.00109 * 24.78271 * 12 11 10 14 14 O 1.21591 * 119.99842 * 5.62979 * 13 12 11 15 15 N 1.34776 * 119.99776 * 185.63407 * 13 12 11 16 16 C 1.46505 * 119.99883 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47001 * 179.97438 * 16 15 13 18 18 O 1.21288 * 120.00164 * 359.97438 * 17 16 15 19 19 N 1.34778 * 119.99476 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99678 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00249 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99740 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46836 * 90.00415 * 24 22 20 26 26 H 1.48503 * 109.47061 * 210.00215 * 24 22 20 27 27 H 1.48497 * 109.47340 * 330.00658 * 24 22 20 28 28 H 1.09002 * 109.46952 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46989 * 300.00282 * 1 2 3 30 30 H 1.08996 * 109.47145 * 60.00562 * 1 2 3 31 31 H 1.08996 * 109.47342 * 239.99618 * 2 1 3 32 32 H 1.09006 * 109.46904 * 119.99937 * 2 1 3 33 33 H 1.07996 * 119.96524 * 0.02562 * 5 4 3 34 34 H 1.08000 * 119.94033 * 179.72022 * 6 5 4 35 35 H 1.09004 * 109.47009 * 59.99718 * 9 8 7 36 36 H 1.09002 * 109.47378 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47450 * 299.99650 * 9 8 7 38 38 H 1.07999 * 120.03081 * 180.02562 * 10 7 6 39 39 H 0.96999 * 120.00063 * 204.77990 * 12 11 10 40 40 H 0.97001 * 120.00248 * 359.97438 * 15 13 12 41 41 H 1.09000 * 109.47001 * 300.00325 * 16 15 13 42 42 H 1.09000 * 109.46874 * 60.00136 * 16 15 13 43 43 H 0.96998 * 120.00449 * 0.02562 * 19 17 16 44 44 H 0.96998 * 120.00123 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3552 1.5256 0.0005 5 6 4.1995 0.4276 -0.0052 6 6 5.5701 0.6077 0.0011 7 6 6.1039 1.8881 0.0015 8 8 7.4525 2.0618 0.0021 9 6 8.2586 0.8820 0.0016 10 6 5.2634 2.9906 0.0011 11 6 3.8881 2.8122 0.0007 12 7 3.0360 3.9250 -0.0003 13 6 3.4678 5.1040 -0.4901 14 8 4.5578 5.1780 -1.0239 15 7 2.6914 6.2010 -0.3882 16 6 3.1611 7.4827 -0.9201 17 6 2.1138 8.5398 -0.6812 18 8 1.0770 8.2508 -0.1220 19 7 2.3290 9.8060 -1.0898 20 6 1.3761 10.7675 -0.8728 21 1 0.4532 10.5104 -0.3742 22 6 1.5976 12.0728 -1.2945 23 7 0.6844 12.9945 -1.0861 24 14 3.1941 12.5176 -2.1563 25 1 3.0333 12.3352 -3.6212 26 1 3.5341 13.9343 -1.8682 27 1 4.2841 11.6371 -1.6646 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.7866 -0.5704 -0.0105 34 1 6.2265 -0.2499 0.0012 35 1 8.0396 0.2926 -0.8889 36 1 9.3122 1.1617 0.0017 37 1 8.0392 0.2915 0.8911 38 1 5.6794 3.9873 0.0011 39 1 2.1354 3.8466 0.3515 40 1 1.8218 6.1419 0.0373 41 1 4.0861 7.7672 -0.4187 42 1 3.3426 7.3872 -1.9906 43 1 3.1577 10.0368 -1.5379 44 1 0.8389 13.9056 -1.3808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349384623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = -126.569640 kcal Electronic energy + Delta-G solvation = -28274.679407 eV Core-core repulsion = 23999.592628 eV Total energy + Delta-G solvation = -4275.086779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.07919 -40.99494 -40.19456 -39.93293 -37.63399 -36.30548 -35.58433 -35.39381 -33.83599 -32.56695 -31.46159 -30.04686 -28.84023 -27.87513 -26.26073 -25.15873 -23.35242 -22.73455 -21.83990 -21.48205 -20.59563 -19.95066 -19.38482 -18.76886 -17.64059 -17.56193 -17.30955 -16.98701 -16.82687 -16.70819 -16.51310 -16.06813 -15.83028 -15.62998 -15.55210 -14.97497 -14.86912 -14.44443 -14.34295 -14.18825 -14.02139 -13.74002 -13.59073 -13.28922 -13.22808 -13.09165 -12.96592 -12.44541 -12.37843 -12.21779 -12.00009 -11.95550 -11.59708 -11.58019 -11.22019 -11.07016 -10.66796 -10.35334 -10.26564 -9.40674 -8.55118 -8.45491 -6.07536 0.18883 0.42654 1.31171 1.34475 1.35323 1.44878 1.77780 1.93859 2.20701 2.21206 2.41330 2.74266 2.78303 3.10741 3.16683 3.76307 3.97036 3.97924 4.11278 4.13042 4.19887 4.35566 4.37566 4.42320 4.42522 4.46317 4.51910 4.62395 4.70364 4.79183 4.94461 4.99572 5.14024 5.15746 5.23149 5.30840 5.38712 5.48486 5.63614 5.81508 5.88141 6.36936 6.48526 6.56234 6.77668 6.81526 7.26661 7.34339 7.77535 8.70875 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.002340 C = 0.002024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.366507 B =11965.036994 C =13830.767341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.333 6.333 4 C 0.059 3.941 5 C -0.140 4.140 6 C -0.184 4.184 7 C 0.104 3.896 8 O -0.340 6.340 9 C 0.018 3.982 10 C -0.157 4.157 11 C 0.165 3.835 12 N -0.665 5.665 13 C 0.707 3.293 14 O -0.602 6.602 15 N -0.718 5.718 16 C 0.137 3.863 17 C 0.446 3.554 18 O -0.614 6.614 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.064 0.936 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.958 3.042 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.232 1.232 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.422 0.578 40 H 0.412 0.588 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.392 0.608 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.784 -31.935 1.254 34.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.248 6.248 4 C 0.012 3.988 5 C -0.159 4.159 6 C -0.203 4.203 7 C 0.058 3.942 8 O -0.255 6.255 9 C -0.076 4.076 10 C -0.178 4.178 11 C 0.069 3.931 12 N -0.312 5.312 13 C 0.407 3.593 14 O -0.482 6.482 15 N -0.375 5.375 16 C 0.009 3.991 17 C 0.233 3.767 18 O -0.500 6.500 19 N -0.217 5.217 20 C -0.460 4.460 21 H 0.082 0.918 22 C -0.208 4.208 23 N -0.565 5.565 24 Si 0.778 3.222 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.156 1.156 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.260 0.740 40 H 0.250 0.750 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.228 0.772 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.897 -31.415 1.138 33.611 hybrid contribution -0.394 0.689 -0.052 0.795 sum 11.503 -30.726 1.086 32.826 Atomic orbital electron populations 1.21815 0.92121 1.04068 1.02913 1.23048 0.96366 0.80608 1.02557 1.86024 1.17688 1.31533 1.89603 1.18507 0.83776 0.91801 1.04734 1.21135 0.92852 0.98382 1.03503 1.21294 0.96071 0.95863 1.07064 1.18766 0.83244 0.93381 0.98790 1.86079 1.14291 1.36077 1.89038 1.23356 0.95245 0.86489 1.02504 1.20366 0.90549 0.99752 1.07135 1.16638 0.88847 0.83908 1.03745 1.42250 1.17710 1.07148 1.64087 1.15815 0.83811 0.80492 0.79177 1.90882 1.22099 1.85072 1.50159 1.44695 1.22445 1.06802 1.63603 1.20771 0.95662 0.80990 1.01690 1.20448 0.89059 0.83864 0.83279 1.90528 1.30342 1.81291 1.47838 1.41906 1.18475 1.07770 1.53540 1.19026 0.99244 0.89275 1.38441 0.91813 1.26065 1.02446 0.94531 0.97760 1.69776 1.36604 1.03437 1.46704 0.85451 0.77943 0.79347 0.79431 1.18085 1.19830 1.15555 0.88120 0.92037 0.92471 0.90913 0.90458 0.81533 0.82006 0.91457 0.86846 0.91157 0.84679 0.73989 0.75033 0.87610 0.87621 0.77169 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.55 5.46 71.98 0.39 0.94 16 3 O -0.33 -6.47 9.55 -94.17 -0.90 -7.37 16 4 C 0.06 1.27 6.70 22.58 0.15 1.43 16 5 C -0.14 -2.24 9.03 22.34 0.20 -2.04 16 6 C -0.18 -3.07 9.03 22.38 0.20 -2.87 16 7 C 0.10 2.48 6.68 22.48 0.15 2.63 16 8 O -0.34 -7.77 10.50 -93.28 -0.98 -8.75 16 9 C 0.02 0.21 9.81 113.37 1.11 1.32 16 10 C -0.16 -4.58 8.65 22.47 0.19 -4.39 16 11 C 0.16 4.46 6.44 38.17 0.25 4.71 16 12 N -0.66 -18.07 5.29 -316.83 -1.68 -19.75 16 13 C 0.71 22.76 8.37 179.05 1.50 24.26 16 14 O -0.60 -22.52 13.51 -4.00 -0.05 -22.58 16 15 N -0.72 -23.00 5.53 -482.28 -2.67 -25.67 16 16 C 0.14 4.58 6.15 85.63 0.53 5.11 16 17 C 0.45 19.59 7.85 87.66 0.69 20.28 16 18 O -0.61 -31.82 15.24 -3.05 -0.05 -31.87 16 19 N -0.58 -26.69 5.09 -306.99 -1.56 -28.25 16 20 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 21 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 22 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 23 N -0.93 -54.61 13.96 21.66 0.30 -54.31 16 24 Si 0.96 38.39 27.74 68.60 1.90 40.29 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.96 6.52 99.48 0.65 -7.31 16 28 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.64 7.65 -2.39 -0.02 0.63 16 32 H 0.08 0.61 7.67 -2.38 -0.02 0.60 16 33 H 0.17 1.46 6.29 -2.91 -0.02 1.44 16 34 H 0.16 1.56 6.28 -2.91 -0.02 1.54 16 35 H 0.07 0.58 7.66 -2.38 -0.02 0.56 16 36 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 38 H 0.14 4.70 5.79 -2.91 -0.02 4.68 16 39 H 0.42 9.73 8.36 -92.71 -0.77 8.95 16 40 H 0.41 13.10 7.46 -92.71 -0.69 12.40 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.11 3.20 8.14 -2.39 -0.02 3.19 16 43 H 0.39 15.25 5.76 -92.71 -0.53 14.71 16 44 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -79.17 372.40 0.77 -78.40 By element: Atomic # 1 Polarization: 48.19 SS G_CDS: -0.97 Total: 47.22 kcal Atomic # 6 Polarization: 25.22 SS G_CDS: 7.43 Total: 32.64 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.61 Total: -127.98 kcal Atomic # 8 Polarization: -68.59 SS G_CDS: -1.98 Total: -70.57 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 1.90 Total: 40.29 kcal Total: -79.17 0.77 -78.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349384623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.174 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds