Wall clock time and date at job start Tue Mar 31 2020 22:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46921 * 2 1 4 4 C 1.46502 * 119.99855 * 270.00402 * 3 2 1 5 5 C 1.52996 * 109.47026 * 269.99505 * 4 3 2 6 6 H 1.08996 * 109.47643 * 305.00868 * 5 4 3 7 7 C 1.53000 * 109.46936 * 65.00499 * 5 4 3 8 8 C 1.47201 * 109.47429 * 185.00091 * 5 4 3 9 9 N 5.69654 * 118.00969 * 309.97206 * 2 1 3 10 10 C 1.34775 * 119.99874 * 89.99829 * 3 2 1 11 11 O 1.21276 * 119.99969 * 179.97438 * 10 3 2 12 12 C 1.50698 * 120.00015 * 0.02562 * 10 3 2 13 13 S 1.80997 * 109.47103 * 179.97438 * 12 10 3 14 14 C 1.76199 * 100.00003 * 179.97438 * 13 12 10 15 15 N 1.32388 * 126.26219 * 0.02615 * 14 13 12 16 16 N 1.28509 * 110.20753 * 180.02562 * 15 14 13 17 17 C 1.33098 * 109.74614 * 359.97438 * 16 15 14 18 18 C 1.39777 * 126.56446 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.40082 * 120.00134 * 359.97438 * 18 17 16 21 21 N 1.30821 * 119.99644 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46926 * 59.99959 * 22 20 18 24 24 H 1.48498 * 109.47386 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47100 * 299.99940 * 22 20 18 26 26 N 1.36673 * 126.26035 * 179.71479 * 14 13 12 27 27 C 1.46499 * 127.15029 * 359.97438 * 26 14 13 28 28 H 1.08999 * 109.46843 * 299.99173 * 1 2 3 29 29 H 1.08992 * 109.47295 * 60.00146 * 1 2 3 30 30 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46510 * 240.00153 * 2 1 3 32 32 H 1.08989 * 109.47200 * 120.00380 * 2 1 3 33 33 H 1.08996 * 109.47348 * 30.00317 * 4 3 2 34 34 H 1.09006 * 109.46926 * 150.00337 * 4 3 2 35 35 H 1.09001 * 109.47074 * 299.99934 * 7 5 4 36 36 H 1.08997 * 109.47560 * 59.99688 * 7 5 4 37 37 H 1.08998 * 109.47342 * 179.97438 * 7 5 4 38 38 H 1.09009 * 109.47229 * 59.99461 * 12 10 3 39 39 H 1.08999 * 109.47153 * 299.99668 * 12 10 3 40 40 H 0.97006 * 119.99487 * 179.97438 * 21 20 18 41 41 H 1.08993 * 109.47848 * 90.02209 * 27 26 14 42 42 H 1.08999 * 109.47223 * 210.02569 * 27 26 14 43 43 H 1.08998 * 109.47025 * 330.01875 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8316 -1.7104 6 1 4.3862 2.1343 -0.9132 7 6 3.9075 0.3453 -2.0137 8 6 3.9884 2.6213 -2.9205 9 7 4.2053 3.2309 -3.8542 10 6 2.2429 2.0166 1.1672 11 8 2.6475 3.1598 1.1672 12 6 1.9923 1.3060 2.4723 13 16 2.3848 2.4147 3.8480 14 6 2.0113 1.3587 5.2081 15 7 1.5708 0.1124 5.1340 16 7 1.3998 -0.3688 6.3133 17 6 1.7234 0.5465 7.2238 18 6 1.6688 0.3954 8.6123 19 1 1.9583 1.2126 9.2562 20 6 1.2385 -0.8160 9.1687 21 7 0.8874 -1.8058 8.3886 22 14 1.1662 -1.0182 11.0242 23 1 0.2370 -0.0108 11.5960 24 1 0.6823 -2.3826 11.3551 25 1 2.5222 -0.8221 11.5968 26 7 2.1290 1.6743 6.5327 27 6 2.5864 2.9441 7.1024 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.5815 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1384 35 1 3.6994 -0.2395 -1.1177 36 1 3.2287 0.0425 -2.8109 37 1 4.9368 0.1742 -2.3288 38 1 2.6228 0.4186 2.5298 39 1 0.9444 1.0114 2.5302 40 1 0.5897 -2.6449 8.7740 41 1 1.7326 3.6060 7.2473 42 1 3.0695 2.7589 8.0617 43 1 3.2976 3.4123 6.4219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357098440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:24 Heat of formation + Delta-G solvation = 60.557778 kcal Electronic energy + Delta-G solvation = -26034.436505 eV Core-core repulsion = 22242.509803 eV Total energy + Delta-G solvation = -3791.926703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.53651 -40.35519 -37.68063 -36.28706 -33.97513 -33.72025 -33.33691 -30.68403 -30.16757 -29.25874 -26.87687 -26.47307 -25.53001 -23.79814 -23.40995 -20.89558 -20.60903 -19.26271 -18.11761 -17.45349 -17.23463 -16.76975 -15.88708 -15.80783 -15.41795 -15.01808 -14.75582 -14.47356 -14.40698 -14.09645 -13.90239 -13.61130 -13.36680 -13.20648 -12.99480 -12.92240 -12.76975 -12.56400 -12.27742 -12.22248 -12.16042 -11.95975 -11.66480 -11.44178 -11.37997 -11.31311 -11.23039 -10.95394 -10.45311 -10.28843 -10.01612 -9.75635 -9.63916 -9.07184 -8.72904 -8.44900 -8.42154 -6.84527 -6.67994 -4.59991 1.74750 2.29690 2.46332 2.49194 2.72779 2.81897 2.90701 3.04560 3.06411 3.33112 3.64920 3.85006 4.21022 4.22797 4.38565 4.41021 4.52595 4.64114 4.74272 4.92828 5.08152 5.11269 5.23811 5.29573 5.31414 5.34072 5.43212 5.54200 5.55613 5.60135 5.63367 5.69369 5.88959 6.00232 6.05232 6.18140 6.72754 6.86113 6.99642 7.21393 7.22308 7.46339 7.85758 7.91635 8.14758 8.67343 8.83032 10.24466 10.59439 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.002353 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.038758 B =11898.192436 C =12578.880381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 N -0.609 5.609 4 C 0.126 3.874 5 C -0.014 4.014 6 H 0.120 0.880 7 C -0.150 4.150 8 C 0.216 3.784 9 N -0.434 5.434 10 C 0.537 3.463 11 O -0.520 6.520 12 C -0.131 4.131 13 S 0.016 5.984 14 C 0.032 3.968 15 N -0.289 5.289 16 N -0.333 5.333 17 C 0.347 3.653 18 C -0.447 4.447 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.737 5.737 22 Si 0.921 3.079 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.265 1.265 26 N -0.513 5.513 27 C 0.100 3.900 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.280 0.720 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 1.962 -13.931 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.343 5.343 4 C 0.002 3.998 5 C -0.037 4.037 6 H 0.138 0.862 7 C -0.208 4.208 8 C -0.103 4.103 9 N -0.109 5.109 10 C 0.325 3.675 11 O -0.395 6.395 12 C -0.283 4.283 13 S 0.242 5.758 14 C -0.340 4.340 15 N -0.136 5.136 16 N -0.181 5.181 17 C 0.102 3.898 18 C -0.487 4.487 19 H 0.102 0.898 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.190 1.190 26 N -0.215 5.215 27 C -0.045 4.045 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.094 3.064 -16.016 16.441 hybrid contribution -0.186 -0.511 1.970 2.044 sum 1.908 2.554 -14.046 14.403 Atomic orbital electron populations 1.22221 0.95353 1.02932 1.02744 1.21898 0.95099 0.81552 1.04348 1.47821 1.66703 1.14905 1.04849 1.21336 0.93112 0.99847 0.85549 1.19332 1.00280 0.94325 0.89788 0.86199 1.21963 1.03116 0.92509 1.03214 1.28963 0.93508 0.93534 0.94271 1.81237 1.08381 1.09539 1.11780 1.20004 0.76687 0.86239 0.84615 1.90737 1.44601 1.17324 1.86878 1.23455 1.08240 1.03200 0.93400 1.85079 1.85388 1.14431 0.90943 1.25645 1.20253 1.00052 0.88049 1.74487 1.14672 1.03642 1.20775 1.75422 1.28561 1.21954 0.92119 1.21613 0.93080 0.80116 0.94944 1.18070 1.43218 1.00146 0.87249 0.89831 1.25790 0.93497 0.94882 1.00543 1.70001 1.26837 1.02541 1.36726 0.86177 0.79588 0.78334 0.81456 1.18961 1.20086 1.18968 1.46008 1.57612 1.13708 1.04217 1.21511 0.99338 0.84158 0.99449 0.91860 0.92369 0.90965 0.89397 0.89107 0.89274 0.88726 0.89922 0.91582 0.91495 0.86202 0.86197 0.90940 0.92483 0.90334 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.09 0.60 5.00 -4.04 -0.02 0.58 16 3 N -0.61 -5.10 2.30 -173.69 -0.40 -5.50 16 4 C 0.13 0.89 4.85 -4.04 -0.02 0.87 16 5 C -0.01 -0.09 2.97 -93.41 -0.28 -0.37 16 6 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 7 C -0.15 -0.69 8.14 37.16 0.30 -0.39 16 8 C 0.22 1.96 14.65 -20.76 -0.30 1.66 16 9 N -0.43 -5.21 18.54 42.15 0.78 -4.43 16 10 C 0.54 6.64 7.69 -10.99 -0.08 6.55 16 11 O -0.52 -8.01 15.44 5.56 0.09 -7.92 16 12 C -0.13 -1.86 4.26 36.00 0.15 -1.71 16 13 S 0.02 0.29 20.92 -107.50 -2.25 -1.96 16 14 C 0.03 0.73 8.09 -87.28 -0.71 0.02 16 15 N -0.29 -7.47 11.62 30.89 0.36 -7.11 16 16 N -0.33 -9.63 10.48 31.26 0.33 -9.30 16 17 C 0.35 9.44 7.53 -154.81 -1.17 8.27 16 18 C -0.45 -11.55 9.05 -38.32 -0.35 -11.90 16 19 H 0.08 1.96 7.31 -52.49 -0.38 1.57 16 20 C 0.08 1.96 5.50 -17.29 -0.10 1.86 16 21 N -0.74 -19.68 11.94 55.56 0.66 -19.01 16 22 Si 0.92 18.09 29.56 -169.99 -5.03 13.07 16 23 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 25 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 26 N -0.51 -12.11 3.26 -123.18 -0.40 -12.51 16 27 C 0.10 1.81 10.87 59.85 0.65 2.46 16 28 H 0.06 0.56 7.22 -51.93 -0.38 0.18 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.34 5.98 -51.93 -0.31 0.03 16 32 H 0.09 0.64 6.44 -51.94 -0.33 0.30 16 33 H 0.09 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.09 0.83 7.42 -51.93 -0.39 0.44 16 35 H 0.08 0.35 5.89 -51.93 -0.31 0.04 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.12 1.64 7.40 -51.91 -0.38 1.26 16 39 H 0.12 1.70 7.19 -51.92 -0.37 1.33 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 43 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -34.95 379.65 -7.41 -42.36 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.74 Total: -0.49 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -1.53 Total: 7.09 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 1.33 Total: -57.87 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.25 Total: -1.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.95 -7.41 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357098440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.921 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds