Wall clock time and date at job start Tue Mar 31 2020 22:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46921 * 2 1 4 4 C 1.46502 * 119.99855 * 270.00402 * 3 2 1 5 5 C 1.52996 * 109.47026 * 269.99505 * 4 3 2 6 6 H 1.08996 * 109.47643 * 305.00868 * 5 4 3 7 7 C 1.53000 * 109.46936 * 65.00499 * 5 4 3 8 8 C 1.47201 * 109.47429 * 185.00091 * 5 4 3 9 9 N 5.69654 * 118.00969 * 309.97206 * 2 1 3 10 10 C 1.34775 * 119.99874 * 89.99829 * 3 2 1 11 11 O 1.21276 * 119.99969 * 179.97438 * 10 3 2 12 12 C 1.50698 * 120.00015 * 0.02562 * 10 3 2 13 13 S 1.80997 * 109.47103 * 179.97438 * 12 10 3 14 14 C 1.76199 * 100.00003 * 179.97438 * 13 12 10 15 15 N 1.32388 * 126.26219 * 0.02615 * 14 13 12 16 16 N 1.28509 * 110.20753 * 180.02562 * 15 14 13 17 17 C 1.33098 * 109.74614 * 359.97438 * 16 15 14 18 18 C 1.39777 * 126.56446 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00032 * 179.97438 * 18 17 16 20 20 C 1.40082 * 120.00134 * 359.97438 * 18 17 16 21 21 N 1.30821 * 119.99644 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46926 * 59.99959 * 22 20 18 24 24 H 1.48498 * 109.47386 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47100 * 299.99940 * 22 20 18 26 26 N 1.36673 * 126.26035 * 179.71479 * 14 13 12 27 27 C 1.46499 * 127.15029 * 359.97438 * 26 14 13 28 28 H 1.08999 * 109.46843 * 299.99173 * 1 2 3 29 29 H 1.08992 * 109.47295 * 60.00146 * 1 2 3 30 30 H 1.09000 * 109.46892 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46510 * 240.00153 * 2 1 3 32 32 H 1.08989 * 109.47200 * 120.00380 * 2 1 3 33 33 H 1.08996 * 109.47348 * 30.00317 * 4 3 2 34 34 H 1.09006 * 109.46926 * 150.00337 * 4 3 2 35 35 H 1.09001 * 109.47074 * 299.99934 * 7 5 4 36 36 H 1.08997 * 109.47560 * 59.99688 * 7 5 4 37 37 H 1.08998 * 109.47342 * 179.97438 * 7 5 4 38 38 H 1.09009 * 109.47229 * 59.99461 * 12 10 3 39 39 H 1.08999 * 109.47153 * 299.99668 * 12 10 3 40 40 H 0.97006 * 119.99487 * 179.97438 * 21 20 18 41 41 H 1.08993 * 109.47848 * 90.02209 * 27 26 14 42 42 H 1.08999 * 109.47223 * 210.02569 * 27 26 14 43 43 H 1.08998 * 109.47025 * 330.01875 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.7074 1.8316 -1.7104 6 1 4.3862 2.1343 -0.9132 7 6 3.9075 0.3453 -2.0137 8 6 3.9884 2.6213 -2.9205 9 7 4.2053 3.2309 -3.8542 10 6 2.2429 2.0166 1.1672 11 8 2.6475 3.1598 1.1672 12 6 1.9923 1.3060 2.4723 13 16 2.3848 2.4147 3.8480 14 6 2.0113 1.3587 5.2081 15 7 1.5708 0.1124 5.1340 16 7 1.3998 -0.3688 6.3133 17 6 1.7234 0.5465 7.2238 18 6 1.6688 0.3954 8.6123 19 1 1.9583 1.2126 9.2562 20 6 1.2385 -0.8160 9.1687 21 7 0.8874 -1.8058 8.3886 22 14 1.1662 -1.0182 11.0242 23 1 0.2370 -0.0108 11.5960 24 1 0.6823 -2.3826 11.3551 25 1 2.5222 -0.8221 11.5968 26 7 2.1290 1.6743 6.5327 27 6 2.5864 2.9441 7.1024 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.5815 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1384 35 1 3.6994 -0.2395 -1.1177 36 1 3.2287 0.0425 -2.8109 37 1 4.9368 0.1742 -2.3288 38 1 2.6228 0.4186 2.5298 39 1 0.9444 1.0114 2.5302 40 1 0.5897 -2.6449 8.7740 41 1 1.7326 3.6060 7.2473 42 1 3.0695 2.7589 8.0617 43 1 3.2976 3.4123 6.4219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357098440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:22 Heat of formation + Delta-G solvation = 39.647179 kcal Electronic energy + Delta-G solvation = -26035.343257 eV Core-core repulsion = 22242.509803 eV Total energy + Delta-G solvation = -3792.833454 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40623 -41.24300 -38.47944 -37.12718 -35.58702 -35.11573 -34.62970 -31.47225 -31.31373 -30.93411 -28.21400 -27.51230 -27.23673 -24.54612 -23.99735 -22.73981 -22.40429 -20.17982 -19.22477 -18.76346 -18.22348 -18.01599 -17.28938 -16.85304 -16.78443 -16.42962 -16.07975 -15.75621 -15.23799 -15.14277 -14.89980 -14.70485 -14.58025 -14.00778 -13.98539 -13.87674 -13.77138 -13.72112 -13.47779 -13.31277 -13.11148 -12.90013 -12.73453 -12.72844 -12.54453 -12.22209 -12.02420 -11.96549 -11.85375 -11.79475 -11.58571 -11.39541 -11.03449 -10.54114 -10.32740 -10.24283 -9.82997 -8.51326 -8.50091 -6.53885 0.34024 1.21276 1.23850 1.38208 1.44524 1.58834 1.63810 1.65171 1.73876 1.98070 2.21348 2.48488 2.54208 2.96877 3.35811 3.37518 3.82466 3.92879 4.02066 4.10790 4.11461 4.24187 4.40126 4.44133 4.47797 4.58610 4.65042 4.65584 4.76216 4.86907 4.91212 4.92029 4.99691 5.06372 5.10045 5.33633 5.35725 5.43596 5.51742 5.61121 6.07268 6.16428 6.25168 6.50787 6.79343 6.95453 6.96280 8.44003 8.67725 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.002353 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.038758 B =11898.192436 C =12578.880381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 N -0.592 5.592 4 C 0.125 3.875 5 C -0.007 4.007 6 H 0.115 0.885 7 C -0.148 4.148 8 C 0.242 3.758 9 N -0.486 5.486 10 C 0.543 3.457 11 O -0.554 6.554 12 C -0.126 4.126 13 S 0.034 5.966 14 C 0.045 3.955 15 N -0.322 5.322 16 N -0.384 5.384 17 C 0.317 3.683 18 C -0.472 4.472 19 H 0.101 0.899 20 C 0.030 3.970 21 N -0.785 5.785 22 Si 1.004 2.996 23 H -0.256 1.256 24 H -0.271 1.271 25 H -0.255 1.255 26 N -0.521 5.521 27 C 0.093 3.907 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.284 0.716 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.939 2.008 -14.243 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.032 4.032 3 N -0.324 5.324 4 C 0.001 3.999 5 C -0.030 4.030 6 H 0.133 0.867 7 C -0.206 4.206 8 C -0.075 4.075 9 N -0.163 5.163 10 C 0.330 3.670 11 O -0.433 6.433 12 C -0.278 4.278 13 S 0.259 5.741 14 C -0.328 4.328 15 N -0.167 5.167 16 N -0.231 5.231 17 C 0.071 3.929 18 C -0.512 4.512 19 H 0.119 0.881 20 C -0.191 4.191 21 N -0.410 5.410 22 Si 0.823 3.177 23 H -0.180 1.180 24 H -0.196 1.196 25 H -0.179 1.179 26 N -0.222 5.222 27 C -0.050 4.050 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.142 0.858 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.326 3.101 -16.364 16.817 hybrid contribution -0.244 -0.443 1.860 1.928 sum 2.082 2.658 -14.504 14.892 Atomic orbital electron populations 1.22215 0.95475 1.03407 1.02097 1.22145 0.94943 0.80242 1.05910 1.47776 1.64997 1.15524 1.04074 1.21486 0.94123 0.99072 0.85227 1.19389 0.99721 0.95448 0.88420 0.86750 1.22003 1.03856 0.90556 1.04197 1.29314 0.91985 0.92383 0.93869 1.81267 1.10109 1.11255 1.13630 1.19651 0.76758 0.85681 0.84943 1.90731 1.46664 1.18611 1.87266 1.23538 1.08384 1.02822 0.93071 1.85064 1.84773 1.14065 0.90196 1.26563 1.16773 0.99880 0.89589 1.74365 1.16981 1.05220 1.20132 1.75291 1.30539 1.23926 0.93327 1.22015 0.94036 0.81197 0.95686 1.18564 1.43990 1.01392 0.87251 0.88133 1.26920 0.92202 0.93955 1.05989 1.70137 1.28124 1.03362 1.39396 0.84941 0.80034 0.78476 0.74270 1.17983 1.19597 1.17899 1.46342 1.57011 1.14598 1.04293 1.21837 1.00535 0.82301 1.00334 0.94334 0.91166 0.90001 0.85802 0.89664 0.86135 0.90371 0.89071 0.89924 0.91296 0.85561 0.86239 0.90522 0.90893 0.89252 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 71.98 0.74 -1.28 16 2 C 0.09 0.89 5.00 86.38 0.43 1.33 16 3 N -0.59 -8.65 2.30 -821.83 -1.89 -10.54 16 4 C 0.12 1.45 4.85 86.38 0.42 1.87 16 5 C -0.01 -0.08 2.97 -12.60 -0.04 -0.11 16 6 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 7 C -0.15 -0.88 8.14 71.98 0.59 -0.29 16 8 C 0.24 4.06 14.65 89.44 1.31 5.37 16 9 N -0.49 -11.35 18.54 20.01 0.37 -10.98 16 10 C 0.54 12.78 7.69 87.66 0.67 13.45 16 11 O -0.55 -16.60 15.44 -3.02 -0.05 -16.65 16 12 C -0.13 -3.51 4.26 71.24 0.30 -3.21 16 13 S 0.03 1.20 20.92 -56.49 -1.18 0.02 16 14 C 0.05 2.11 8.09 179.18 1.45 3.56 16 15 N -0.32 -17.09 11.62 -56.17 -0.65 -17.75 16 16 N -0.38 -23.03 10.48 -55.02 -0.58 -23.60 16 17 C 0.32 17.67 7.53 133.23 1.00 18.68 16 18 C -0.47 -24.72 9.05 23.09 0.21 -24.51 16 19 H 0.10 4.68 7.31 -2.91 -0.02 4.66 16 20 C 0.03 1.53 5.50 85.29 0.47 1.99 16 21 N -0.79 -43.18 11.94 21.86 0.26 -42.92 16 22 Si 1.00 36.88 29.56 68.60 2.03 38.91 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 N -0.52 -24.69 3.26 -543.64 -1.77 -26.46 16 27 C 0.09 3.24 10.87 127.77 1.39 4.63 16 28 H 0.04 0.64 7.22 -2.39 -0.02 0.63 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 0.43 5.98 -2.39 -0.01 0.41 16 32 H 0.09 1.03 6.44 -2.39 -0.02 1.01 16 33 H 0.12 0.71 8.07 -2.39 -0.02 0.69 16 34 H 0.08 1.25 7.42 -2.38 -0.02 1.23 16 35 H 0.09 0.43 5.89 -2.39 -0.01 0.41 16 36 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.13 3.38 7.40 -2.39 -0.02 3.36 16 39 H 0.12 3.38 7.19 -2.40 -0.02 3.36 16 40 H 0.28 14.12 8.30 -92.70 -0.77 13.35 16 41 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.09 2.90 7.54 -2.39 -0.02 2.88 16 43 H 0.09 2.69 7.85 -2.39 -0.02 2.67 16 Total: -1.00 -79.83 379.65 6.53 -73.30 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.04 Total: 15.21 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 8.94 Total: 21.47 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -4.26 Total: -132.25 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -1.18 Total: 0.02 kcal Total: -79.83 6.53 -73.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357098440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.948 kcal (2) G-P(sol) polarization free energy of solvation -79.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds