Wall clock time and date at job start Tue Mar 31 2020 22:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47590 * 2 1 4 4 C 1.46499 * 120.00206 * 265.42915 * 3 2 1 5 5 C 1.52998 * 109.46928 * 275.81051 * 4 3 2 6 6 H 1.09001 * 109.47562 * 54.49874 * 5 4 3 7 7 C 1.52996 * 109.46854 * 294.49344 * 5 4 3 8 8 C 1.47205 * 109.47021 * 174.49556 * 5 4 3 9 9 N 5.56155 * 120.01776 * 303.31538 * 2 1 3 10 10 C 1.34777 * 119.99994 * 85.42715 * 3 2 1 11 11 O 1.21287 * 119.99986 * 180.02562 * 10 3 2 12 12 C 1.50701 * 120.00421 * 359.97438 * 10 3 2 13 13 S 1.80996 * 109.47302 * 180.02562 * 12 10 3 14 14 C 1.76203 * 99.99916 * 180.02562 * 13 12 10 15 15 N 1.32388 * 126.25661 * 0.02839 * 14 13 12 16 16 N 1.28522 * 110.20423 * 180.02562 * 15 14 13 17 17 C 1.33092 * 109.74154 * 359.97438 * 16 15 14 18 18 C 1.39781 * 126.56324 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00046 * 179.97438 * 18 17 16 20 20 C 1.40084 * 119.99871 * 359.96871 * 18 17 16 21 21 N 1.30814 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47160 * 120.00512 * 22 20 18 25 25 H 1.48501 * 109.46882 * 240.00445 * 22 20 18 26 26 N 1.36666 * 126.25981 * 179.71401 * 14 13 12 27 27 C 1.46502 * 127.15157 * 359.97215 * 26 14 13 28 28 H 1.08998 * 109.47017 * 305.03566 * 1 2 3 29 29 H 1.09004 * 109.46746 * 65.02751 * 1 2 3 30 30 H 1.09001 * 109.47389 * 185.02827 * 1 2 3 31 31 H 1.09005 * 109.47021 * 239.99253 * 2 1 3 32 32 H 1.09007 * 109.46888 * 120.00041 * 2 1 3 33 33 H 1.09004 * 109.47109 * 35.80410 * 4 3 2 34 34 H 1.09001 * 109.47299 * 155.80475 * 4 3 2 35 35 H 1.08995 * 109.47637 * 65.14019 * 7 5 4 36 36 H 1.09004 * 109.47110 * 185.14332 * 7 5 4 37 37 H 1.09004 * 109.47587 * 305.13434 * 7 5 4 38 38 H 1.09002 * 109.47075 * 300.00432 * 12 10 3 39 39 H 1.09005 * 109.46545 * 60.00175 * 12 10 3 40 40 H 0.96995 * 119.99962 * 179.97438 * 21 20 18 41 41 H 1.08993 * 109.47201 * 90.02309 * 27 26 14 42 42 H 1.08999 * 109.46873 * 210.02726 * 27 26 14 43 43 H 1.09000 * 109.47130 * 330.01800 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3580 2.0380 -1.2647 5 6 3.7882 1.6686 -1.6633 6 1 3.8898 0.5836 -1.6882 7 6 4.7684 2.2494 -0.6422 8 6 4.0840 2.2196 -2.9959 9 7 4.3123 2.6449 -4.0242 10 6 2.1554 2.0475 1.1635 11 8 2.5593 3.1911 1.1634 12 6 1.8055 1.3720 2.4644 13 16 2.0937 2.5177 3.8357 14 6 1.6182 1.4979 5.1916 15 7 1.1840 0.2494 5.1177 16 7 0.9244 -0.2006 6.2932 17 6 1.1788 0.7393 7.2007 18 6 1.0204 0.6250 8.5848 19 1 1.2608 1.4597 9.2266 20 6 0.5498 -0.5722 9.1394 21 7 0.2591 -1.5834 8.3620 22 14 0.3375 -0.7248 10.9890 23 1 0.7319 0.5506 11.6393 24 1 -1.0838 -1.0205 11.3014 25 1 1.1953 -1.8257 11.4965 26 7 1.6358 1.8489 6.5123 27 6 2.0496 3.1343 7.0806 28 1 -0.3633 0.5900 0.8414 29 1 -0.3633 0.4339 -0.9316 30 1 -0.3634 -1.0237 0.0901 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.6679 1.7092 -2.0417 34 1 2.2818 3.1187 -1.1447 35 1 4.6091 1.7739 0.3256 36 1 5.7902 2.0651 -0.9738 37 1 4.6043 3.3231 -0.5508 38 1 0.7558 1.0789 2.4508 39 1 2.4284 0.4868 2.5931 40 1 -0.0664 -2.4125 8.7460 41 1 1.1876 3.7983 7.1430 42 1 2.4589 2.9754 8.0783 43 1 2.8104 3.5852 6.4435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357098441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:28 Heat of formation + Delta-G solvation = 59.545925 kcal Electronic energy + Delta-G solvation = -26122.309458 eV Core-core repulsion = 22330.338878 eV Total energy + Delta-G solvation = -3791.970580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.53859 -40.36561 -37.59442 -36.22780 -34.10142 -33.72391 -33.33879 -30.48232 -30.16617 -29.26082 -26.82819 -26.46420 -25.52228 -23.92374 -23.23234 -20.89345 -20.60069 -19.27143 -18.09057 -17.47016 -17.27808 -16.74202 -15.83386 -15.73941 -15.42749 -15.15853 -14.74644 -14.40494 -14.24341 -14.09364 -13.91596 -13.48429 -13.41698 -13.25634 -13.06701 -12.87421 -12.56643 -12.49084 -12.28036 -12.23361 -12.08519 -11.90298 -11.68515 -11.41562 -11.36405 -11.33717 -11.27104 -10.96834 -10.39953 -10.28276 -10.00954 -9.75032 -9.66264 -9.05190 -8.73069 -8.45153 -8.42285 -6.84609 -6.68499 -4.60162 1.74772 2.29047 2.44306 2.49192 2.72680 2.82357 2.88023 3.04711 3.09030 3.32709 3.64865 3.84802 4.21024 4.23380 4.38321 4.42784 4.56401 4.66035 4.77390 4.94209 5.12375 5.15562 5.29059 5.29827 5.37221 5.46613 5.48046 5.55210 5.57289 5.63467 5.65695 5.88746 5.96673 6.02069 6.05070 6.19273 6.72661 6.86482 7.00521 7.20521 7.21062 7.46071 7.85640 7.92830 8.15381 8.67265 8.82907 10.24081 10.59231 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.002373 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.775766 B =11798.275544 C =12460.262173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 N -0.610 5.610 4 C 0.124 3.876 5 C -0.012 4.012 6 H 0.116 0.884 7 C -0.141 4.141 8 C 0.215 3.785 9 N -0.434 5.434 10 C 0.538 3.462 11 O -0.517 6.517 12 C -0.132 4.132 13 S 0.017 5.983 14 C 0.032 3.968 15 N -0.290 5.290 16 N -0.333 5.333 17 C 0.346 3.654 18 C -0.446 4.446 19 H 0.084 0.916 20 C 0.078 3.922 21 N -0.737 5.737 22 Si 0.920 3.080 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.272 1.272 26 N -0.513 5.513 27 C 0.100 3.900 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 2.915 -13.059 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.344 5.344 4 C -0.001 4.001 5 C -0.035 4.035 6 H 0.134 0.866 7 C -0.200 4.200 8 C -0.103 4.103 9 N -0.110 5.110 10 C 0.325 3.675 11 O -0.392 6.392 12 C -0.284 4.284 13 S 0.242 5.758 14 C -0.340 4.340 15 N -0.136 5.136 16 N -0.180 5.180 17 C 0.102 3.898 18 C -0.487 4.487 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.361 5.361 22 Si 0.744 3.256 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.197 1.197 26 N -0.215 5.215 27 C -0.045 4.045 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.635 3.725 -15.284 16.146 hybrid contribution -0.355 -0.523 1.953 2.053 sum 3.280 3.203 -13.331 14.097 Atomic orbital electron populations 1.22237 0.95319 1.03102 1.02645 1.21731 0.95052 0.81465 1.04066 1.47822 1.66285 1.14869 1.05417 1.21391 0.92599 1.00403 0.85690 1.19332 0.98124 1.01545 0.84520 0.86642 1.21800 0.97518 1.02701 0.97937 1.29002 0.93520 0.93481 0.94344 1.81240 1.08321 1.09109 1.12295 1.19959 0.76901 0.86103 0.84509 1.90733 1.44806 1.17172 1.86532 1.23480 1.08077 1.03287 0.93541 1.85059 1.84593 1.14548 0.91593 1.25653 1.20339 0.99737 0.88259 1.74495 1.13993 1.04361 1.20739 1.75427 1.28416 1.21825 0.92377 1.21631 0.92811 0.80387 0.94973 1.18148 1.42669 1.00192 0.87643 0.89741 1.25795 0.93642 0.94790 1.00499 1.70013 1.27327 1.02217 1.36530 0.86074 0.78735 0.79351 0.81443 1.18523 1.19747 1.19740 1.46011 1.57343 1.13611 1.04568 1.21511 0.99675 0.83714 0.99551 0.91806 0.92396 0.90906 0.89757 0.89315 0.89632 0.88262 0.90616 0.92017 0.90881 0.86206 0.86264 0.91049 0.92486 0.90333 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.14 37.16 0.38 -0.86 16 2 C 0.10 0.64 5.91 -4.04 -0.02 0.61 16 3 N -0.61 -5.05 2.29 -173.68 -0.40 -5.45 16 4 C 0.12 0.86 4.89 -4.04 -0.02 0.84 16 5 C -0.01 -0.08 2.96 -93.41 -0.28 -0.35 16 6 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 7 C -0.14 -1.10 8.01 37.16 0.30 -0.80 16 8 C 0.22 1.88 14.64 -20.76 -0.30 1.57 16 9 N -0.43 -5.06 18.54 42.15 0.78 -4.28 16 10 C 0.54 6.46 6.44 -10.99 -0.07 6.39 16 11 O -0.52 -7.56 14.37 5.55 0.08 -7.48 16 12 C -0.13 -1.86 4.31 36.01 0.16 -1.70 16 13 S 0.02 0.29 20.92 -107.50 -2.25 -1.96 16 14 C 0.03 0.73 8.09 -87.28 -0.71 0.02 16 15 N -0.29 -7.46 11.62 30.89 0.36 -7.10 16 16 N -0.33 -9.62 10.48 31.26 0.33 -9.29 16 17 C 0.35 9.41 7.53 -154.81 -1.17 8.24 16 18 C -0.45 -11.53 9.05 -38.31 -0.35 -11.88 16 19 H 0.08 1.99 7.31 -52.48 -0.38 1.60 16 20 C 0.08 1.95 5.50 -17.29 -0.10 1.85 16 21 N -0.74 -19.66 11.94 55.56 0.66 -19.00 16 22 Si 0.92 18.08 29.56 -169.99 -5.03 13.06 16 23 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 26 N -0.51 -12.06 3.26 -123.18 -0.40 -12.46 16 27 C 0.10 1.80 10.87 59.85 0.65 2.45 16 28 H 0.06 0.58 6.75 -51.93 -0.35 0.23 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.33 8.04 -51.93 -0.42 -0.09 16 32 H 0.09 0.62 6.63 -51.92 -0.34 0.28 16 33 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.10 0.85 7.25 -51.93 -0.38 0.47 16 35 H 0.07 0.66 6.95 -51.93 -0.36 0.30 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.68 8.03 -51.93 -0.42 0.26 16 38 H 0.12 1.70 6.66 -51.91 -0.35 1.35 16 39 H 0.12 1.63 7.41 -51.91 -0.38 1.24 16 40 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.32 7.54 -51.93 -0.39 0.93 16 43 H 0.07 1.07 7.85 -51.93 -0.41 0.67 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -34.50 380.15 -7.51 -42.01 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.85 Total: -0.16 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.53 Total: 6.39 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 1.33 Total: -57.58 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.08 Total: -7.48 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.25 Total: -1.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.50 -7.51 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357098441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.557 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds