Wall clock time and date at job start Tue Mar 31 2020 22:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47590 * 2 1 4 4 C 1.46499 * 120.00206 * 265.42915 * 3 2 1 5 5 C 1.52998 * 109.46928 * 275.81051 * 4 3 2 6 6 H 1.09001 * 109.47562 * 54.49874 * 5 4 3 7 7 C 1.52996 * 109.46854 * 294.49344 * 5 4 3 8 8 C 1.47205 * 109.47021 * 174.49556 * 5 4 3 9 9 N 5.56155 * 120.01776 * 303.31538 * 2 1 3 10 10 C 1.34777 * 119.99994 * 85.42715 * 3 2 1 11 11 O 1.21287 * 119.99986 * 180.02562 * 10 3 2 12 12 C 1.50701 * 120.00421 * 359.97438 * 10 3 2 13 13 S 1.80996 * 109.47302 * 180.02562 * 12 10 3 14 14 C 1.76203 * 99.99916 * 180.02562 * 13 12 10 15 15 N 1.32388 * 126.25661 * 0.02839 * 14 13 12 16 16 N 1.28522 * 110.20423 * 180.02562 * 15 14 13 17 17 C 1.33092 * 109.74154 * 359.97438 * 16 15 14 18 18 C 1.39781 * 126.56324 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00046 * 179.97438 * 18 17 16 20 20 C 1.40084 * 119.99871 * 359.96871 * 18 17 16 21 21 N 1.30814 * 119.99824 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47160 * 120.00512 * 22 20 18 25 25 H 1.48501 * 109.46882 * 240.00445 * 22 20 18 26 26 N 1.36666 * 126.25981 * 179.71401 * 14 13 12 27 27 C 1.46502 * 127.15157 * 359.97215 * 26 14 13 28 28 H 1.08998 * 109.47017 * 305.03566 * 1 2 3 29 29 H 1.09004 * 109.46746 * 65.02751 * 1 2 3 30 30 H 1.09001 * 109.47389 * 185.02827 * 1 2 3 31 31 H 1.09005 * 109.47021 * 239.99253 * 2 1 3 32 32 H 1.09007 * 109.46888 * 120.00041 * 2 1 3 33 33 H 1.09004 * 109.47109 * 35.80410 * 4 3 2 34 34 H 1.09001 * 109.47299 * 155.80475 * 4 3 2 35 35 H 1.08995 * 109.47637 * 65.14019 * 7 5 4 36 36 H 1.09004 * 109.47110 * 185.14332 * 7 5 4 37 37 H 1.09004 * 109.47587 * 305.13434 * 7 5 4 38 38 H 1.09002 * 109.47075 * 300.00432 * 12 10 3 39 39 H 1.09005 * 109.46545 * 60.00175 * 12 10 3 40 40 H 0.96995 * 119.99962 * 179.97438 * 21 20 18 41 41 H 1.08993 * 109.47201 * 90.02309 * 27 26 14 42 42 H 1.08999 * 109.46873 * 210.02726 * 27 26 14 43 43 H 1.09000 * 109.47130 * 330.01800 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3580 2.0380 -1.2647 5 6 3.7882 1.6686 -1.6633 6 1 3.8898 0.5836 -1.6882 7 6 4.7684 2.2494 -0.6422 8 6 4.0840 2.2196 -2.9959 9 7 4.3123 2.6449 -4.0242 10 6 2.1554 2.0475 1.1635 11 8 2.5593 3.1911 1.1634 12 6 1.8055 1.3720 2.4644 13 16 2.0937 2.5177 3.8357 14 6 1.6182 1.4979 5.1916 15 7 1.1840 0.2494 5.1177 16 7 0.9244 -0.2006 6.2932 17 6 1.1788 0.7393 7.2007 18 6 1.0204 0.6250 8.5848 19 1 1.2608 1.4597 9.2266 20 6 0.5498 -0.5722 9.1394 21 7 0.2591 -1.5834 8.3620 22 14 0.3375 -0.7248 10.9890 23 1 0.7319 0.5506 11.6393 24 1 -1.0838 -1.0205 11.3014 25 1 1.1953 -1.8257 11.4965 26 7 1.6358 1.8489 6.5123 27 6 2.0496 3.1343 7.0806 28 1 -0.3633 0.5900 0.8414 29 1 -0.3633 0.4339 -0.9316 30 1 -0.3634 -1.0237 0.0901 31 1 1.8934 -0.5140 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.6679 1.7092 -2.0417 34 1 2.2818 3.1187 -1.1447 35 1 4.6091 1.7739 0.3256 36 1 5.7902 2.0651 -0.9738 37 1 4.6043 3.3231 -0.5508 38 1 0.7558 1.0789 2.4508 39 1 2.4284 0.4868 2.5931 40 1 -0.0664 -2.4125 8.7460 41 1 1.1876 3.7983 7.1430 42 1 2.4589 2.9754 8.0783 43 1 2.8104 3.5852 6.4435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357098441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:27 Heat of formation + Delta-G solvation = 39.073504 kcal Electronic energy + Delta-G solvation = -26123.197209 eV Core-core repulsion = 22330.338878 eV Total energy + Delta-G solvation = -3792.858331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.131 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40391 -41.23493 -38.37657 -37.04479 -35.58807 -35.11602 -34.76895 -31.46973 -31.13108 -30.93259 -28.21566 -27.55182 -27.24695 -24.53306 -23.99478 -22.73621 -22.38483 -20.14238 -19.22617 -18.74542 -18.23711 -18.00853 -17.27871 -16.82323 -16.70988 -16.42174 -16.09539 -15.80287 -15.15106 -15.10263 -14.89660 -14.70267 -14.48638 -14.07783 -13.98435 -13.83764 -13.81999 -13.76922 -13.41192 -13.18827 -13.08004 -12.94268 -12.74463 -12.73760 -12.59368 -12.30596 -11.98238 -11.93603 -11.86030 -11.79523 -11.58068 -11.43330 -11.00444 -10.53786 -10.32443 -10.24107 -9.79259 -8.51758 -8.49075 -6.53849 0.35224 1.21689 1.22673 1.41703 1.44487 1.61470 1.63748 1.65879 1.75098 2.01222 2.21098 2.48422 2.54367 2.97624 3.37406 3.38068 3.80612 3.93877 4.03012 4.11772 4.13749 4.26830 4.41495 4.45229 4.48156 4.57479 4.65414 4.67612 4.76395 4.86232 4.90292 4.91680 4.99881 5.03537 5.09527 5.32851 5.35889 5.43323 5.53564 5.61179 6.07602 6.19182 6.25800 6.52819 6.79423 6.95713 7.00285 8.44033 8.67912 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.025089 B = 0.002373 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.775766 B =11798.275544 C =12460.262173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.594 5.594 4 C 0.123 3.877 5 C -0.001 4.001 6 H 0.151 0.849 7 C -0.140 4.140 8 C 0.244 3.756 9 N -0.486 5.486 10 C 0.544 3.456 11 O -0.547 6.547 12 C -0.128 4.128 13 S 0.037 5.963 14 C 0.046 3.954 15 N -0.323 5.323 16 N -0.385 5.385 17 C 0.317 3.683 18 C -0.471 4.471 19 H 0.101 0.899 20 C 0.030 3.970 21 N -0.786 5.786 22 Si 1.004 2.996 23 H -0.248 1.248 24 H -0.268 1.268 25 H -0.267 1.267 26 N -0.521 5.521 27 C 0.093 3.907 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.284 0.716 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 3.091 -13.436 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.027 4.027 3 N -0.326 5.326 4 C -0.001 4.001 5 C -0.024 4.024 6 H 0.169 0.831 7 C -0.198 4.198 8 C -0.074 4.074 9 N -0.163 5.163 10 C 0.331 3.669 11 O -0.425 6.425 12 C -0.280 4.280 13 S 0.262 5.738 14 C -0.328 4.328 15 N -0.168 5.168 16 N -0.231 5.231 17 C 0.070 3.930 18 C -0.511 4.511 19 H 0.119 0.881 20 C -0.191 4.191 21 N -0.411 5.411 22 Si 0.823 3.177 23 H -0.171 1.171 24 H -0.193 1.193 25 H -0.192 1.192 26 N -0.222 5.222 27 C -0.050 4.050 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.033 3.898 -15.696 16.668 hybrid contribution -0.445 -0.493 1.873 1.987 sum 3.587 3.405 -13.823 14.681 Atomic orbital electron populations 1.22230 0.95762 1.03136 1.02143 1.21973 0.94640 0.80250 1.05807 1.47771 1.64768 1.15417 1.04669 1.21525 0.93702 0.99546 0.85357 1.19399 0.97093 1.03281 0.82619 0.83120 1.21754 0.98591 1.01504 0.97996 1.29262 0.92014 0.92021 0.94126 1.81279 1.09991 1.10880 1.14106 1.19569 0.76965 0.85668 0.84747 1.90732 1.46578 1.18292 1.86861 1.23566 1.08214 1.02797 0.93378 1.85030 1.83737 1.14305 0.90747 1.26596 1.16889 0.99504 0.89797 1.74374 1.16307 1.06004 1.20108 1.75295 1.30403 1.23809 0.93600 1.22028 0.93814 0.81436 0.95706 1.18622 1.43450 1.01402 0.87636 0.88133 1.26922 0.92435 0.93848 1.05889 1.70142 1.28594 1.03112 1.39225 0.84842 0.78687 0.79807 0.74369 1.17052 1.19305 1.19214 1.46346 1.56664 1.14564 1.04644 1.21839 1.01004 0.81768 1.00389 0.94385 0.91176 0.90285 0.85806 0.89875 0.86681 0.89931 0.91385 0.91060 0.92757 0.86406 0.85781 0.90552 0.90890 0.89291 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.14 71.98 0.73 -1.41 16 2 C 0.09 0.94 5.91 86.38 0.51 1.45 16 3 N -0.59 -8.44 2.29 -821.80 -1.88 -10.32 16 4 C 0.12 1.35 4.89 86.38 0.42 1.78 16 5 C 0.00 -0.01 2.96 -12.60 -0.04 -0.05 16 6 H 0.15 0.51 8.14 -2.39 -0.02 0.49 16 7 C -0.14 -1.93 8.01 71.98 0.58 -1.35 16 8 C 0.24 3.72 14.64 89.44 1.31 5.03 16 9 N -0.49 -10.75 18.54 20.01 0.37 -10.38 16 10 C 0.54 12.40 6.44 87.66 0.56 12.97 16 11 O -0.55 -15.51 14.37 -3.05 -0.04 -15.56 16 12 C -0.13 -3.53 4.31 71.24 0.31 -3.22 16 13 S 0.04 1.28 20.92 -56.49 -1.18 0.10 16 14 C 0.05 2.11 8.09 179.18 1.45 3.56 16 15 N -0.32 -17.15 11.62 -56.18 -0.65 -17.81 16 16 N -0.38 -23.06 10.48 -55.02 -0.58 -23.64 16 17 C 0.32 17.64 7.53 133.23 1.00 18.64 16 18 C -0.47 -24.67 9.05 23.09 0.21 -24.46 16 19 H 0.10 4.70 7.31 -2.91 -0.02 4.68 16 20 C 0.03 1.50 5.50 85.29 0.47 1.97 16 21 N -0.79 -43.26 11.94 21.86 0.26 -43.00 16 22 Si 1.00 36.95 29.56 68.60 2.03 38.98 16 23 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 24 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 25 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 26 N -0.52 -24.61 3.26 -543.63 -1.77 -26.38 16 27 C 0.09 3.22 10.87 127.77 1.39 4.61 16 28 H 0.04 0.66 6.75 -2.39 -0.02 0.65 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.12 0.35 8.04 -2.38 -0.02 0.33 16 32 H 0.08 0.99 6.63 -2.38 -0.02 0.97 16 33 H 0.12 0.69 8.11 -2.39 -0.02 0.67 16 34 H 0.08 1.28 7.25 -2.39 -0.02 1.26 16 35 H 0.07 1.07 6.95 -2.39 -0.02 1.06 16 36 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.05 0.96 8.03 -2.38 -0.02 0.94 16 38 H 0.12 3.35 6.66 -2.39 -0.02 3.33 16 39 H 0.12 3.33 7.41 -2.39 -0.02 3.31 16 40 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 41 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.09 2.88 7.54 -2.39 -0.02 2.86 16 43 H 0.09 2.68 7.85 -2.39 -0.02 2.67 16 Total: -1.00 -79.25 380.15 6.49 -72.76 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 1.04 Total: 15.70 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 8.90 Total: 19.53 kcal Atomic # 7 Polarization: -127.27 SS G_CDS: -4.25 Total: -131.52 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.04 Total: -15.56 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -1.18 Total: 0.10 kcal Total: -79.25 6.49 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357098441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.833 kcal (2) G-P(sol) polarization free energy of solvation -79.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds