Wall clock time and date at job start Tue Mar 31 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47643 * 2 1 4 4 C 1.46496 * 120.00099 * 270.00593 * 3 2 1 5 5 C 1.50701 * 109.46738 * 269.99529 * 4 3 2 6 6 H 1.07997 * 120.00414 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99995 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47202 * 120.00084 * 9 7 5 12 12 H 1.48502 * 109.47363 * 240.00081 * 9 7 5 13 13 C 1.34776 * 119.99470 * 89.99743 * 3 2 1 14 14 O 1.21284 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00512 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.47176 * 179.97438 * 15 13 3 17 17 C 1.35678 * 116.99488 * 179.97438 * 16 15 13 18 18 N 1.32270 * 119.68679 * 359.97438 * 17 16 15 19 19 C 1.31938 * 121.64927 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.58677 * 180.02562 * 19 18 17 21 21 C 1.38096 * 120.83141 * 0.02562 * 19 18 17 22 22 C 1.38782 * 119.28629 * 359.97438 * 21 19 18 23 23 C 1.50699 * 120.75598 * 180.02562 * 22 21 19 24 24 C 1.38429 * 118.48685 * 0.02562 * 22 21 19 25 25 N 1.48002 * 120.44234 * 180.27500 * 24 22 21 26 26 O 1.21794 * 119.99992 * 269.72197 * 25 24 22 27 27 O 1.21805 * 119.99817 * 89.72213 * 25 24 22 28 28 H 1.08999 * 109.47215 * 59.99447 * 1 2 3 29 29 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46624 * 299.99892 * 1 2 3 31 31 H 1.08999 * 109.46624 * 240.00108 * 2 1 3 32 32 H 1.09007 * 109.46922 * 120.00746 * 2 1 3 33 33 H 1.08994 * 109.47118 * 29.99587 * 4 3 2 34 34 H 1.09004 * 109.47232 * 149.99886 * 4 3 2 35 35 H 0.96999 * 119.99959 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47273 * 59.99029 * 15 13 3 37 37 H 1.09004 * 109.46511 * 299.99285 * 15 13 3 38 38 H 1.08998 * 109.46745 * 89.99858 * 20 19 18 39 39 H 1.09002 * 109.47100 * 210.00413 * 20 19 18 40 40 H 1.08999 * 109.46730 * 329.99868 * 20 19 18 41 41 H 1.07994 * 120.35819 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47375 * 269.99961 * 23 22 21 43 43 H 1.09001 * 109.47454 * 30.00276 * 23 22 21 44 44 H 1.09008 * 109.47099 * 149.99802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3904 -2.8774 8 7 3.3498 3.1273 -3.6170 9 14 5.9134 2.0962 -3.4171 10 1 6.6008 1.2401 -2.4171 11 1 5.9204 1.4181 -4.7382 12 1 6.6217 3.3970 -3.5246 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9923 1.3058 2.4723 16 8 2.3024 2.1811 3.5585 17 6 2.1294 1.6921 4.8123 18 7 1.6910 0.4553 4.9783 19 6 1.5084 -0.0592 6.1794 20 6 1.0075 -1.4741 6.3146 21 6 1.7706 0.6826 7.3144 22 6 2.2321 1.9848 7.1827 23 6 2.5293 2.8237 8.3988 24 6 2.4134 2.4954 5.9089 25 7 2.9095 3.8768 5.7183 26 8 2.1208 4.8012 5.6366 27 8 4.1065 4.0889 5.6432 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1383 35 1 3.6758 3.5178 -4.4429 36 1 2.6227 0.4184 2.5299 37 1 0.9444 1.0115 2.5302 38 1 1.8555 -2.1580 6.3475 39 1 0.4287 -1.5683 7.2334 40 1 0.3760 -1.7190 5.4606 41 1 1.6181 0.2540 8.2938 42 1 1.6323 3.3693 8.6919 43 1 2.8453 2.1775 9.2178 44 1 3.3253 3.5313 8.1665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358828018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:15 Heat of formation + Delta-G solvation = -36.787593 kcal Electronic energy + Delta-G solvation = -29494.975992 eV Core-core repulsion = 25223.782455 eV Total energy + Delta-G solvation = -4271.193537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.38546 -41.10175 -39.55390 -38.20004 -36.42494 -35.40926 -35.06065 -32.95256 -32.71130 -30.24107 -29.99387 -28.95814 -28.32835 -26.64741 -25.40701 -23.45413 -23.10991 -22.72520 -21.79965 -19.58116 -18.86232 -18.74750 -18.41594 -18.14713 -16.86953 -16.58442 -16.40544 -16.01357 -15.59276 -15.15912 -15.12297 -14.54393 -14.19677 -14.08651 -14.00711 -13.71799 -13.48157 -13.29900 -13.10477 -12.89822 -12.66002 -12.61699 -12.25297 -12.09291 -11.72001 -11.60490 -11.37327 -11.35067 -11.20407 -11.03806 -10.93588 -10.77603 -10.59387 -10.45043 -10.41983 -10.15869 -9.66211 -9.24602 -9.07229 -8.45444 -7.79812 -6.06433 -4.11430 0.05060 0.44898 0.54168 1.27181 2.19319 2.80027 3.17927 3.29965 3.38253 3.39063 3.42477 3.69157 3.78949 4.11685 4.20265 4.40456 4.43900 4.66692 4.74544 4.79985 4.84124 4.99551 5.00794 5.09154 5.13601 5.18807 5.28232 5.29180 5.29764 5.37312 5.52320 5.65795 5.66602 5.92269 6.13658 6.21768 6.39016 6.56902 6.96957 7.03664 7.37340 7.44721 7.60032 7.89314 8.18587 8.23906 8.80465 8.96183 9.53770 11.01862 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.003082 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.841359 B = 9082.909909 C =10230.675392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.504 3.496 14 O -0.515 6.515 15 C 0.053 3.947 16 O -0.270 6.270 17 C 0.391 3.609 18 N -0.526 5.526 19 C 0.210 3.790 20 C -0.111 4.111 21 C -0.211 4.211 22 C 0.047 3.953 23 C -0.133 4.133 24 C -0.118 4.118 25 N 0.032 4.968 26 O -0.131 6.131 27 O -0.132 6.132 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 -12.123 24.750 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.288 3.712 14 O -0.390 6.390 15 C -0.026 4.026 16 O -0.173 6.173 17 C 0.210 3.790 18 N -0.253 5.253 19 C 0.073 3.927 20 C -0.168 4.168 21 C -0.232 4.232 22 C 0.039 3.961 23 C -0.189 4.189 24 C -0.202 4.202 25 N 0.564 4.436 26 O -0.355 6.355 27 O -0.355 6.355 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.176 0.824 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.025 -12.334 23.776 27.961 hybrid contribution 1.182 0.411 0.071 1.254 sum -6.843 -11.923 23.847 27.526 Atomic orbital electron populations 1.22231 0.96498 1.01655 1.02441 1.21514 0.93759 0.83922 1.03028 1.48190 1.63751 1.13403 1.06981 1.19356 0.96574 0.93746 0.77383 1.21451 0.96798 1.32169 1.06388 0.92355 1.24935 0.97968 0.94792 0.96351 1.69938 1.35669 1.33249 1.14350 0.86422 0.84485 0.78160 0.78243 1.19796 1.20932 1.20757 1.19664 0.80039 0.87207 0.84255 1.90764 1.44237 1.17405 1.86600 1.22794 1.03097 0.92725 0.83938 1.86432 1.79587 1.40627 1.10666 1.19248 0.87191 0.87337 0.85218 1.67631 1.20285 1.10061 1.27367 1.21400 0.88110 0.96662 0.86571 1.20900 1.02403 0.89098 1.04384 1.21693 1.07196 0.93231 1.01048 1.19897 0.89797 0.94594 0.91861 1.21078 1.03793 0.99827 0.94221 1.20723 1.19110 0.85921 0.94472 1.43038 1.00727 1.01998 0.97853 1.94564 1.53447 1.35735 1.51715 1.94580 0.98837 1.90210 1.51922 0.91727 0.91868 0.93223 0.89334 0.91806 0.94530 0.93677 0.92683 0.88365 0.88415 0.88949 0.89506 0.89355 0.82387 0.88439 0.88662 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.16 0.38 -1.80 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.52 2.46 -175.06 -0.43 -12.95 16 4 C 0.25 6.50 5.16 -5.20 -0.03 6.48 16 5 C -0.53 -15.14 9.39 -34.44 -0.32 -15.47 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.50 11.09 7.75 -10.99 -0.09 11.00 16 14 O -0.51 -14.08 16.08 -14.36 -0.23 -14.31 16 15 C 0.05 0.88 4.34 36.01 0.16 1.03 16 16 O -0.27 -5.02 9.41 -38.65 -0.36 -5.38 16 17 C 0.39 5.90 7.49 -17.13 -0.13 5.77 16 18 N -0.53 -6.29 9.13 -9.55 -0.09 -6.38 16 19 C 0.21 1.72 6.78 -82.60 -0.56 1.16 16 20 C -0.11 -0.46 10.17 36.01 0.37 -0.10 16 21 C -0.21 -1.47 9.44 -39.43 -0.37 -1.84 16 22 C 0.05 0.45 5.91 -104.35 -0.62 -0.17 16 23 C -0.13 -0.91 9.84 36.01 0.35 -0.55 16 24 C -0.12 -1.67 6.17 -79.65 -0.49 -2.16 16 25 N 0.03 0.55 3.17 34.11 0.11 0.65 16 26 O -0.13 -2.30 19.25 -29.46 -0.57 -2.87 16 27 O -0.13 -2.37 19.21 -29.46 -0.57 -2.94 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 31 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 33 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.10 1.43 7.36 -51.93 -0.38 1.05 16 37 H 0.10 1.37 7.15 -51.93 -0.37 0.99 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.09 0.16 8.08 -51.93 -0.42 -0.26 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.16 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 44 H 0.08 0.66 7.48 -51.92 -0.39 0.27 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -37.44 387.21 -8.05 -45.49 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -6.00 Total: -4.88 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.47 Total: 6.59 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.33 Total: -44.68 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -1.73 Total: -25.50 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.44 -8.05 -45.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358828018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.703 kcal (2) G-P(sol) polarization free energy of solvation -37.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds