Wall clock time and date at job start Tue Mar 31 2020 22:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47643 * 2 1 4 4 C 1.46496 * 120.00099 * 270.00593 * 3 2 1 5 5 C 1.50701 * 109.46738 * 269.99529 * 4 3 2 6 6 H 1.07997 * 120.00414 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99995 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99790 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00153 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47167 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47202 * 120.00084 * 9 7 5 12 12 H 1.48502 * 109.47363 * 240.00081 * 9 7 5 13 13 C 1.34776 * 119.99470 * 89.99743 * 3 2 1 14 14 O 1.21284 * 119.99740 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00512 * 0.02562 * 13 3 2 16 16 O 1.42903 * 109.47176 * 179.97438 * 15 13 3 17 17 C 1.35678 * 116.99488 * 179.97438 * 16 15 13 18 18 N 1.32270 * 119.68679 * 359.97438 * 17 16 15 19 19 C 1.31938 * 121.64927 * 180.02562 * 18 17 16 20 20 C 1.50702 * 119.58677 * 180.02562 * 19 18 17 21 21 C 1.38096 * 120.83141 * 0.02562 * 19 18 17 22 22 C 1.38782 * 119.28629 * 359.97438 * 21 19 18 23 23 C 1.50699 * 120.75598 * 180.02562 * 22 21 19 24 24 C 1.38429 * 118.48685 * 0.02562 * 22 21 19 25 25 N 1.48002 * 120.44234 * 180.27500 * 24 22 21 26 26 O 1.21794 * 119.99992 * 269.72197 * 25 24 22 27 27 O 1.21805 * 119.99817 * 89.72213 * 25 24 22 28 28 H 1.08999 * 109.47215 * 59.99447 * 1 2 3 29 29 H 1.08997 * 109.47263 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46624 * 299.99892 * 1 2 3 31 31 H 1.08999 * 109.46624 * 240.00108 * 2 1 3 32 32 H 1.09007 * 109.46922 * 120.00746 * 2 1 3 33 33 H 1.08994 * 109.47118 * 29.99587 * 4 3 2 34 34 H 1.09004 * 109.47232 * 149.99886 * 4 3 2 35 35 H 0.96999 * 119.99959 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47273 * 59.99029 * 15 13 3 37 37 H 1.09004 * 109.46511 * 299.99285 * 15 13 3 38 38 H 1.08998 * 109.46745 * 89.99858 * 20 19 18 39 39 H 1.09002 * 109.47100 * 210.00413 * 20 19 18 40 40 H 1.08999 * 109.46730 * 329.99868 * 20 19 18 41 41 H 1.07994 * 120.35819 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.47375 * 269.99961 * 23 22 21 43 43 H 1.09001 * 109.47454 * 30.00276 * 23 22 21 44 44 H 1.09008 * 109.47099 * 149.99802 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3904 -2.8774 8 7 3.3498 3.1273 -3.6170 9 14 5.9134 2.0962 -3.4171 10 1 6.6008 1.2401 -2.4171 11 1 5.9204 1.4181 -4.7382 12 1 6.6217 3.3970 -3.5246 13 6 2.2431 2.0164 1.1673 14 8 2.6470 3.1600 1.1673 15 6 1.9923 1.3058 2.4723 16 8 2.3024 2.1811 3.5585 17 6 2.1294 1.6921 4.8123 18 7 1.6910 0.4553 4.9783 19 6 1.5084 -0.0592 6.1794 20 6 1.0075 -1.4741 6.3146 21 6 1.7706 0.6826 7.3144 22 6 2.2321 1.9848 7.1827 23 6 2.5293 2.8237 8.3988 24 6 2.4134 2.4954 5.9089 25 7 2.9095 3.8768 5.7183 26 8 2.1208 4.8012 5.6366 27 8 4.1065 4.0889 5.6432 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 1.5817 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1383 35 1 3.6758 3.5178 -4.4429 36 1 2.6227 0.4184 2.5299 37 1 0.9444 1.0115 2.5302 38 1 1.8555 -2.1580 6.3475 39 1 0.4287 -1.5683 7.2334 40 1 0.3760 -1.7190 5.4606 41 1 1.6181 0.2540 8.2938 42 1 1.6323 3.3693 8.6919 43 1 2.8453 2.1775 9.2178 44 1 3.3253 3.5313 8.1665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358828018.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:14 Heat of formation + Delta-G solvation = -62.642945 kcal Electronic energy + Delta-G solvation = -29496.097164 eV Core-core repulsion = 25223.782455 eV Total energy + Delta-G solvation = -4272.314709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.52404 -42.14324 -41.02734 -39.49779 -37.73592 -37.14435 -35.78935 -34.99860 -33.60851 -31.79025 -30.95038 -30.30122 -28.89163 -28.45420 -26.46253 -25.02852 -24.37298 -24.05768 -22.71034 -20.80979 -20.16743 -20.03140 -19.59647 -19.27200 -18.70701 -18.04896 -17.90333 -17.36822 -17.11241 -16.39269 -16.22317 -15.74084 -15.43875 -15.16645 -14.89505 -14.71318 -14.48694 -14.37855 -14.23150 -13.89828 -13.71708 -13.47076 -13.43732 -13.33628 -13.11827 -13.01802 -12.94910 -12.73409 -12.56576 -12.54460 -12.41575 -12.39231 -12.20715 -11.94520 -11.75349 -11.28607 -11.22601 -10.86307 -10.69563 -10.07649 -9.62990 -8.28079 -6.42916 -0.80238 -0.75205 -0.33193 0.18611 1.04834 1.32682 1.36574 1.46453 1.50771 2.04274 2.22329 2.37462 2.65860 3.01990 3.08603 3.22359 3.32810 3.41944 3.73699 3.81264 3.85292 4.09578 4.18361 4.21941 4.33763 4.39287 4.54861 4.67388 4.69816 4.78760 4.81449 4.82826 4.90123 4.91186 4.98034 5.03016 5.13232 5.28463 5.33256 5.47376 5.57046 5.74779 5.98357 6.22967 6.23784 6.51090 6.65850 7.12504 7.30012 8.79898 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.013603 B = 0.003082 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.841359 B = 9082.909909 C =10230.675392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.591 5.591 4 C 0.263 3.737 5 C -0.547 4.547 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.268 1.268 11 H -0.264 1.264 12 H -0.283 1.283 13 C 0.493 3.507 14 O -0.586 6.586 15 C 0.074 3.926 16 O -0.315 6.315 17 C 0.364 3.636 18 N -0.531 5.531 19 C 0.206 3.794 20 C -0.108 4.108 21 C -0.181 4.181 22 C 0.043 3.957 23 C -0.132 4.132 24 C -0.148 4.148 25 N 0.036 4.964 26 O -0.152 6.152 27 O -0.165 6.165 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.034 0.966 34 H -0.006 1.006 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.213 0.787 42 H 0.110 0.890 43 H 0.135 0.865 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 -16.562 27.854 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.323 5.323 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.189 1.189 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.466 6.466 15 C -0.003 4.003 16 O -0.220 6.220 17 C 0.184 3.816 18 N -0.259 5.259 19 C 0.070 3.930 20 C -0.165 4.165 21 C -0.200 4.200 22 C 0.035 3.965 23 C -0.188 4.188 24 C -0.232 4.232 25 N 0.563 4.437 26 O -0.376 6.376 27 O -0.384 6.384 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.013 0.987 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.230 0.770 42 H 0.128 0.872 43 H 0.153 0.847 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.754 -16.840 26.903 32.924 hybrid contribution 1.294 1.661 -0.755 2.237 sum -7.460 -15.179 26.147 31.141 Atomic orbital electron populations 1.22170 0.94087 1.04012 1.01700 1.21923 0.95718 0.80577 1.04624 1.48199 1.63276 1.15444 1.05356 1.18800 0.95782 0.91477 0.79727 1.21718 0.97763 1.32381 1.06681 0.92821 1.25874 1.02541 0.94312 0.96380 1.70053 1.37772 1.33941 1.14842 0.85346 0.78756 0.78023 0.78548 1.19180 1.18884 1.20924 1.20667 0.78510 0.86643 0.86195 1.90718 1.47429 1.20621 1.87840 1.22568 1.05190 0.91718 0.80861 1.86351 1.80985 1.42285 1.12377 1.19366 0.89484 0.88884 0.83826 1.67685 1.20411 1.08273 1.29524 1.22327 0.86508 0.98439 0.85706 1.21113 1.03175 0.86100 1.06077 1.22330 1.03452 0.91190 1.03058 1.20431 0.89397 0.96025 0.90672 1.21214 1.03567 0.99929 0.94100 1.21134 1.21749 0.83862 0.96452 1.43521 1.00253 1.03365 0.96606 1.94522 1.53273 1.37589 1.52207 1.94544 0.99770 1.91071 1.53037 0.93914 0.87823 0.92585 0.89815 0.88091 0.94853 0.98749 0.92268 0.85945 0.85416 0.87353 0.86038 0.89570 0.76970 0.87216 0.84650 0.92958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.11 16 2 C 0.09 2.78 5.93 86.38 0.51 3.29 16 3 N -0.59 -25.97 2.46 -826.16 -2.03 -28.00 16 4 C 0.26 14.64 5.16 85.63 0.44 15.09 16 5 C -0.55 -32.51 9.39 25.60 0.24 -32.27 16 6 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 7 C 0.01 0.48 5.46 84.66 0.46 0.95 16 8 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 9 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 13 C 0.49 22.71 7.75 87.66 0.68 23.39 16 14 O -0.59 -34.64 16.08 15.99 0.26 -34.39 16 15 C 0.07 2.46 4.34 71.24 0.31 2.77 16 16 O -0.31 -12.19 9.41 -70.92 -0.67 -12.85 16 17 C 0.36 10.95 7.49 84.78 0.63 11.59 16 18 N -0.53 -11.40 9.13 -296.97 -2.71 -14.11 16 19 C 0.21 2.46 6.78 42.51 0.29 2.75 16 20 C -0.11 -0.27 10.17 71.24 0.72 0.45 16 21 C -0.18 -1.58 9.44 22.37 0.21 -1.37 16 22 C 0.04 0.72 5.91 -19.69 -0.12 0.60 16 23 C -0.13 -1.47 9.84 71.24 0.70 -0.77 16 24 C -0.15 -4.22 6.17 36.58 0.23 -4.00 16 25 N 0.04 1.28 3.17 -46.00 -0.15 1.13 16 26 O -0.15 -5.80 19.25 18.89 0.36 -5.44 16 27 O -0.16 -6.40 19.21 18.88 0.36 -6.04 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 31 H 0.08 2.59 8.07 -2.39 -0.02 2.57 16 32 H 0.10 2.27 6.44 -2.38 -0.02 2.26 16 33 H 0.03 1.85 8.07 -2.39 -0.02 1.83 16 34 H -0.01 -0.37 7.42 -2.38 -0.02 -0.38 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.12 3.39 7.36 -2.39 -0.02 3.37 16 37 H 0.13 3.37 7.15 -2.39 -0.02 3.36 16 38 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.12 -0.45 8.08 -2.39 -0.02 -0.47 16 40 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.21 -0.44 8.06 -2.91 -0.02 -0.46 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.14 0.39 8.10 -2.39 -0.02 0.37 16 44 H 0.05 0.88 7.48 -2.38 -0.02 0.86 16 Total: -1.00 -92.95 387.21 4.82 -88.13 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.03 Total: 1.00 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 6.05 Total: 19.35 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -4.60 Total: -98.04 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: 0.32 Total: -58.72 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -92.95 4.82 -88.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358828018.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.490 kcal (2) G-P(sol) polarization free energy of solvation -92.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds