Wall clock time and date at job start Tue Mar 31 2020 21:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00274 * 2 1 4 4 C 1.53003 * 109.47096 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47047 * 65.00340 * 4 3 2 6 6 C 1.35736 * 117.00195 * 180.02562 * 5 4 3 7 7 C 1.38933 * 119.60291 * 179.72702 * 6 5 4 8 8 C 1.38291 * 119.18550 * 179.72783 * 7 6 5 9 9 C 1.39447 * 118.42606 * 0.52780 * 8 7 6 10 10 N 1.39901 * 120.42935 * 179.75276 * 9 8 7 11 11 C 1.34779 * 120.00627 * 325.00972 * 10 9 8 12 12 O 1.21391 * 119.99463 * 4.67677 * 11 10 9 13 13 C 1.49334 * 120.00278 * 184.67650 * 11 10 9 14 14 O 1.21362 * 119.99832 * 0.02562 * 13 11 10 15 15 N 1.34771 * 119.99860 * 179.97438 * 13 11 10 16 16 C 1.46498 * 120.00145 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 325.00254 * 16 15 13 18 18 C 1.53001 * 109.47207 * 85.00425 * 16 15 13 19 19 C 1.50705 * 109.47271 * 205.00546 * 16 15 13 20 20 H 1.07995 * 119.99790 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99837 * 180.02562 * 19 16 15 22 22 N 1.31520 * 120.00306 * 359.97438 * 21 19 16 23 23 Si 1.86810 * 120.00025 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46596 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47132 * 119.99481 * 23 21 19 26 26 H 1.48496 * 109.47095 * 239.99720 * 23 21 19 27 27 C 1.38727 * 119.13726 * 359.73152 * 9 8 7 28 28 N 1.31930 * 120.72704 * 359.97438 * 27 9 8 29 29 H 1.09003 * 109.46803 * 59.99663 * 1 2 3 30 30 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46706 * 300.00148 * 1 2 3 32 32 H 1.08994 * 109.46808 * 60.00179 * 3 2 1 33 33 H 1.08997 * 109.46910 * 300.00155 * 3 2 1 34 34 H 1.09000 * 109.46809 * 184.99803 * 4 3 2 35 35 H 1.08998 * 109.47010 * 305.00374 * 4 3 2 36 36 H 1.07998 * 120.40632 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.78510 * 180.24299 * 8 7 6 38 38 H 0.97004 * 119.99638 * 145.01172 * 10 9 8 39 39 H 0.97002 * 120.00278 * 0.02562 * 15 13 11 40 40 H 1.09002 * 109.46726 * 299.99757 * 18 16 15 41 41 H 1.08996 * 109.47242 * 59.99930 * 18 16 15 42 42 H 1.08997 * 109.47353 * 180.02562 * 18 16 15 43 43 H 0.97003 * 119.99918 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.64014 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3003 0.3979 -1.3836 7 6 5.7769 -0.1907 -2.5484 8 6 7.1394 -0.3666 -2.7064 9 6 7.9858 0.0469 -1.6781 10 7 9.3706 -0.1158 -1.7917 11 6 9.8729 -1.1930 -2.4272 12 8 9.1258 -1.9778 -2.9744 13 6 11.3484 -1.4210 -2.4581 14 8 12.0952 -0.6366 -1.9105 15 7 11.8505 -2.4985 -3.0931 16 6 13.2980 -2.7226 -3.1229 17 1 13.8130 -1.7637 -3.1811 18 6 13.7270 -3.4556 -1.8503 19 6 13.6525 -3.5569 -4.3269 20 1 12.8771 -3.8874 -5.0020 21 6 14.9665 -3.8989 -4.5659 22 7 15.9108 -3.4968 -3.7434 23 14 15.4059 -4.9337 -6.0578 24 1 14.1715 -5.2549 -6.8182 25 1 16.3406 -4.1758 -6.9280 26 1 16.0547 -6.1931 -5.6131 27 6 7.4366 0.6219 -0.5413 28 7 6.1316 0.7789 -0.4285 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.9786 2.1764 0.0889 35 1 3.8515 0.5680 0.8409 36 1 5.0919 -0.5035 -3.3226 37 1 7.5382 -0.8177 -3.6030 38 1 9.9694 0.5469 -1.4130 39 1 11.2536 -3.1257 -3.5304 40 1 13.4706 -2.8521 -0.9796 41 1 13.2120 -4.4145 -1.7922 42 1 14.8039 -3.6220 -1.8723 43 1 16.8353 -3.7371 -3.9118 44 1 8.0845 0.9446 0.2602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438878305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:34 Heat of formation + Delta-G solvation = -108.688841 kcal Electronic energy + Delta-G solvation = -27673.526977 eV Core-core repulsion = 23399.215568 eV Total energy + Delta-G solvation = -4274.311409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21843 -40.19856 -38.82594 -38.16707 -37.48821 -35.44581 -34.66610 -32.52595 -32.45698 -31.19214 -29.44803 -29.02716 -26.77363 -25.39754 -24.99170 -24.48681 -22.91583 -22.53926 -20.86888 -19.74262 -18.97869 -18.67629 -17.48348 -17.27961 -17.02556 -16.39776 -16.15867 -15.81571 -15.72668 -15.51045 -15.37352 -15.15468 -14.66090 -14.32974 -13.89005 -13.79806 -13.64737 -13.37164 -13.20073 -12.87805 -12.73545 -12.52600 -12.02820 -11.86243 -11.82762 -11.40176 -11.34138 -11.15855 -11.03887 -10.84706 -10.69651 -10.38397 -10.30741 -10.18629 -10.01561 -9.73137 -9.18186 -9.10645 -8.66304 -8.20399 -8.14168 -6.20494 -4.30182 0.81733 1.03803 1.78988 2.51749 2.79857 3.21169 3.29362 3.29441 3.32961 3.48367 3.67697 3.96102 4.09434 4.30516 4.50439 4.63178 4.69807 4.78142 4.80611 4.90854 4.92602 4.99666 5.07064 5.12090 5.13451 5.26548 5.30309 5.43554 5.55467 5.84177 6.00282 6.37720 6.65959 6.68253 6.80490 6.93132 6.98840 7.04724 7.16428 7.34787 7.57739 7.58818 7.72644 7.83444 8.01611 8.38042 8.56140 8.80847 9.37143 10.85561 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.001725 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.733016 B =16227.030006 C =16731.515732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.060 3.940 4 C 0.073 3.927 5 O -0.298 6.298 6 C 0.305 3.695 7 C -0.168 4.168 8 C -0.042 4.042 9 C 0.061 3.939 10 N -0.644 5.644 11 C 0.509 3.491 12 O -0.507 6.507 13 C 0.496 3.504 14 O -0.534 6.534 15 N -0.666 5.666 16 C 0.261 3.739 17 H 0.055 0.945 18 C -0.149 4.149 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.122 3.878 28 N -0.524 5.524 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.425 0.575 39 H 0.403 0.597 40 H 0.016 0.984 41 H 0.030 0.970 42 H 0.095 0.905 43 H 0.265 0.735 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.252 10.619 7.129 28.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.016 4.016 4 C -0.002 4.002 5 O -0.206 6.206 6 C 0.126 3.874 7 C -0.189 4.189 8 C -0.069 4.069 9 C -0.036 4.036 10 N -0.292 5.292 11 C 0.292 3.708 12 O -0.381 6.381 13 C 0.274 3.726 14 O -0.413 6.413 15 N -0.315 5.315 16 C 0.160 3.840 17 H 0.073 0.927 18 C -0.207 4.207 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.037 4.037 28 N -0.247 5.247 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.263 0.737 39 H 0.237 0.763 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -25.424 10.688 7.715 28.638 hybrid contribution 0.469 -0.588 -1.235 1.447 sum -24.955 10.100 6.480 27.690 Atomic orbital electron populations 1.22765 0.80829 1.03043 0.99939 1.87984 1.19832 1.27176 1.95406 1.22652 0.91874 0.85740 1.01364 1.22640 0.92479 0.98928 0.86175 1.86290 1.17747 1.76693 1.39834 1.19791 0.83890 0.92929 0.90783 1.21008 0.95638 1.04175 0.98081 1.21650 0.91641 0.95220 0.98386 1.18639 0.84124 1.04788 0.96042 1.43056 1.04782 1.24763 1.56615 1.21028 0.90782 0.80617 0.78379 1.90722 1.60446 1.44749 1.42188 1.19597 0.86854 0.84046 0.82125 1.90738 1.59418 1.45688 1.45452 1.46514 1.11868 1.22964 1.50169 1.19010 0.72617 0.97597 0.94788 0.92704 1.22100 1.04721 0.97990 0.95910 1.21224 0.93484 1.33991 1.08786 0.91661 1.24877 0.96006 0.95782 0.96910 1.69902 1.00812 1.44929 1.36366 0.86338 0.78574 0.79782 0.82119 1.19610 1.20805 1.20792 1.22225 0.89837 0.96867 0.94746 1.67288 1.04452 1.22794 1.30189 0.93922 0.89444 0.94067 0.91028 0.92172 0.89966 0.90627 0.83643 0.82361 0.73663 0.76284 0.96441 0.95068 0.88688 0.92477 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.59 10.67 -40.08 -0.43 -4.02 16 3 C 0.06 0.42 6.32 37.16 0.23 0.66 16 4 C 0.07 0.64 5.69 37.16 0.21 0.85 16 5 O -0.30 -3.41 10.08 -23.76 -0.24 -3.65 16 6 C 0.31 3.67 7.49 -17.13 -0.13 3.54 16 7 C -0.17 -1.92 10.03 -39.30 -0.39 -2.32 16 8 C -0.04 -0.52 8.80 -39.11 -0.34 -0.86 16 9 C 0.06 0.74 6.32 -83.54 -0.53 0.21 16 10 N -0.64 -8.24 5.34 -10.18 -0.05 -8.30 16 11 C 0.51 8.16 7.74 -11.64 -0.09 8.07 16 12 O -0.51 -8.71 13.95 5.46 0.08 -8.64 16 13 C 0.50 9.50 7.85 -11.64 -0.09 9.41 16 14 O -0.53 -11.29 16.14 5.49 0.09 -11.20 16 15 N -0.67 -13.83 5.06 -55.40 -0.28 -14.11 16 16 C 0.26 6.41 2.56 -69.08 -0.18 6.23 16 17 H 0.06 1.52 7.58 -51.93 -0.39 1.12 16 18 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 19 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 20 H 0.07 1.64 7.74 -52.49 -0.41 1.23 16 21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 22 N -0.88 -24.10 11.32 55.43 0.63 -23.47 16 23 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C 0.12 1.32 11.12 -17.33 -0.19 1.12 16 28 N -0.52 -6.15 9.20 -13.15 -0.12 -6.27 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.61 8.10 -51.93 -0.42 0.18 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.16 2.05 6.31 -52.49 -0.33 1.72 16 38 H 0.42 4.70 8.30 -40.82 -0.34 4.36 16 39 H 0.40 7.78 8.01 -40.82 -0.33 7.46 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -31.12 382.48 -5.92 -37.04 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.89 Total: 9.11 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: -0.44 Total: 12.46 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.17 Total: -52.14 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.50 Total: -27.51 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.12 -5.92 -37.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438878305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.653 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds