Wall clock time and date at job start Tue Mar 31 2020 21:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 114.00274 * 2 1 4 4 C 1.53003 * 109.47096 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47047 * 65.00340 * 4 3 2 6 6 C 1.35736 * 117.00195 * 180.02562 * 5 4 3 7 7 C 1.38933 * 119.60291 * 179.72702 * 6 5 4 8 8 C 1.38291 * 119.18550 * 179.72783 * 7 6 5 9 9 C 1.39447 * 118.42606 * 0.52780 * 8 7 6 10 10 N 1.39901 * 120.42935 * 179.75276 * 9 8 7 11 11 C 1.34779 * 120.00627 * 325.00972 * 10 9 8 12 12 O 1.21391 * 119.99463 * 4.67677 * 11 10 9 13 13 C 1.49334 * 120.00278 * 184.67650 * 11 10 9 14 14 O 1.21362 * 119.99832 * 0.02562 * 13 11 10 15 15 N 1.34771 * 119.99860 * 179.97438 * 13 11 10 16 16 C 1.46498 * 120.00145 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 325.00254 * 16 15 13 18 18 C 1.53001 * 109.47207 * 85.00425 * 16 15 13 19 19 C 1.50705 * 109.47271 * 205.00546 * 16 15 13 20 20 H 1.07995 * 119.99790 * 359.97438 * 19 16 15 21 21 C 1.37871 * 119.99837 * 180.02562 * 19 16 15 22 22 N 1.31520 * 120.00306 * 359.97438 * 21 19 16 23 23 Si 1.86810 * 120.00025 * 179.97438 * 21 19 16 24 24 H 1.48496 * 109.46596 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47132 * 119.99481 * 23 21 19 26 26 H 1.48496 * 109.47095 * 239.99720 * 23 21 19 27 27 C 1.38727 * 119.13726 * 359.73152 * 9 8 7 28 28 N 1.31930 * 120.72704 * 359.97438 * 27 9 8 29 29 H 1.09003 * 109.46803 * 59.99663 * 1 2 3 30 30 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46706 * 300.00148 * 1 2 3 32 32 H 1.08994 * 109.46808 * 60.00179 * 3 2 1 33 33 H 1.08997 * 109.46910 * 300.00155 * 3 2 1 34 34 H 1.09000 * 109.46809 * 184.99803 * 4 3 2 35 35 H 1.08998 * 109.47010 * 305.00374 * 4 3 2 36 36 H 1.07998 * 120.40632 * 359.97438 * 7 6 5 37 37 H 1.08002 * 120.78510 * 180.24299 * 8 7 6 38 38 H 0.97004 * 119.99638 * 145.01172 * 10 9 8 39 39 H 0.97002 * 120.00278 * 0.02562 * 15 13 11 40 40 H 1.09002 * 109.46726 * 299.99757 * 18 16 15 41 41 H 1.08996 * 109.47242 * 59.99930 * 18 16 15 42 42 H 1.08997 * 109.47353 * 180.02562 * 18 16 15 43 43 H 0.97003 * 119.99918 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.64014 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3003 0.3979 -1.3836 7 6 5.7769 -0.1907 -2.5484 8 6 7.1394 -0.3666 -2.7064 9 6 7.9858 0.0469 -1.6781 10 7 9.3706 -0.1158 -1.7917 11 6 9.8729 -1.1930 -2.4272 12 8 9.1258 -1.9778 -2.9744 13 6 11.3484 -1.4210 -2.4581 14 8 12.0952 -0.6366 -1.9105 15 7 11.8505 -2.4985 -3.0931 16 6 13.2980 -2.7226 -3.1229 17 1 13.8130 -1.7637 -3.1811 18 6 13.7270 -3.4556 -1.8503 19 6 13.6525 -3.5569 -4.3269 20 1 12.8771 -3.8874 -5.0020 21 6 14.9665 -3.8989 -4.5659 22 7 15.9108 -3.4968 -3.7434 23 14 15.4059 -4.9337 -6.0578 24 1 14.1715 -5.2549 -6.8182 25 1 16.3406 -4.1758 -6.9280 26 1 16.0547 -6.1931 -5.6131 27 6 7.4366 0.6219 -0.5413 28 7 6.1316 0.7789 -0.4285 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.9786 2.1764 0.0889 35 1 3.8515 0.5680 0.8409 36 1 5.0919 -0.5035 -3.3226 37 1 7.5382 -0.8177 -3.6030 38 1 9.9694 0.5469 -1.4130 39 1 11.2536 -3.1257 -3.5304 40 1 13.4706 -2.8521 -0.9796 41 1 13.2120 -4.4145 -1.7922 42 1 14.8039 -3.6220 -1.8723 43 1 16.8353 -3.7371 -3.9118 44 1 8.0845 0.9446 0.2602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438878305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:33 Heat of formation + Delta-G solvation = -133.075611 kcal Electronic energy + Delta-G solvation = -27674.584466 eV Core-core repulsion = 23399.215568 eV Total energy + Delta-G solvation = -4275.368899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.30186 -41.36055 -39.96591 -39.18812 -38.30760 -37.04831 -36.01015 -34.33013 -33.42835 -31.90623 -31.10137 -30.14617 -27.37709 -27.26388 -26.33994 -25.32760 -23.99385 -23.37572 -22.41976 -21.28326 -20.30234 -19.61160 -18.69267 -18.24767 -17.91779 -17.73510 -17.38855 -16.97634 -16.94832 -16.61122 -16.42988 -16.05995 -15.95560 -15.55741 -15.21464 -14.96990 -14.54364 -14.50605 -14.44668 -14.32820 -13.77810 -13.70138 -13.25830 -13.06649 -12.90850 -12.84610 -12.66913 -12.58977 -12.49957 -12.29826 -12.12299 -12.08957 -11.61942 -11.14210 -11.01941 -10.81400 -10.67271 -10.63557 -10.43802 -9.97863 -9.11631 -8.19971 -6.36902 -0.19616 0.11143 0.48733 1.25308 1.45010 1.47474 1.58820 1.98240 2.11728 2.39247 2.66075 2.70813 2.80840 3.11225 3.24301 3.45738 3.75943 3.90420 3.91617 4.05778 4.16673 4.38758 4.42301 4.52636 4.56505 4.60056 4.61069 4.70902 4.77995 4.87515 4.89411 4.91427 5.02411 5.04033 5.31194 5.38433 5.44885 5.60064 5.75261 5.92806 6.04357 6.13796 6.23045 6.50205 6.65314 6.68633 6.76963 7.07073 7.35477 8.86304 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.030536 B = 0.001725 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.733016 B =16227.030006 C =16731.515732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.060 3.940 4 C 0.068 3.932 5 O -0.309 6.309 6 C 0.300 3.700 7 C -0.172 4.172 8 C -0.047 4.047 9 C 0.044 3.956 10 N -0.624 5.624 11 C 0.520 3.480 12 O -0.519 6.519 13 C 0.497 3.503 14 O -0.555 6.555 15 N -0.670 5.670 16 C 0.267 3.733 17 H 0.018 0.982 18 C -0.137 4.137 19 C -0.551 4.551 20 H 0.071 0.929 21 C 0.021 3.979 22 N -0.912 5.912 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.278 1.278 27 C 0.133 3.867 28 N -0.530 5.530 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.434 0.566 39 H 0.410 0.590 40 H 0.021 0.979 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.267 0.733 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.016 10.985 7.271 30.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.016 4.016 4 C -0.007 4.007 5 O -0.216 6.216 6 C 0.121 3.879 7 C -0.192 4.192 8 C -0.074 4.074 9 C -0.052 4.052 10 N -0.272 5.272 11 C 0.302 3.698 12 O -0.395 6.395 13 C 0.277 3.723 14 O -0.435 6.435 15 N -0.319 5.319 16 C 0.164 3.836 17 H 0.035 0.965 18 C -0.195 4.195 19 C -0.589 4.589 20 H 0.089 0.911 21 C -0.180 4.180 22 N -0.550 5.550 23 Si 0.796 3.204 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.204 1.204 27 C -0.025 4.025 28 N -0.253 5.253 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.274 0.726 39 H 0.246 0.754 40 H 0.040 0.960 41 H 0.058 0.942 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -27.244 11.087 7.875 30.450 hybrid contribution 0.904 -0.602 -1.202 1.620 sum -26.340 10.486 6.674 29.125 Atomic orbital electron populations 1.22921 0.79260 1.03719 1.01120 1.87928 1.21714 1.28599 1.95687 1.22776 0.90508 0.85282 1.03000 1.22869 0.93864 0.99125 0.84792 1.86288 1.17369 1.76836 1.41150 1.20001 0.84331 0.92611 0.90909 1.21139 0.95511 1.04089 0.98510 1.21651 0.92168 0.95308 0.98322 1.18730 0.83326 1.06253 0.96920 1.42821 1.05466 1.23650 1.55297 1.20223 0.88814 0.81547 0.79240 1.90731 1.60008 1.45550 1.43164 1.20057 0.88420 0.82968 0.80875 1.90722 1.60610 1.46130 1.46008 1.46257 1.10522 1.24044 1.51107 1.18642 0.74507 0.95546 0.94868 0.96456 1.21928 1.03313 0.98389 0.95898 1.21520 0.93932 1.34115 1.09348 0.91131 1.25704 0.95939 0.96830 0.99548 1.70023 1.01154 1.45913 1.37937 0.85311 0.78343 0.78085 0.78697 1.18820 1.20715 1.20379 1.22638 0.89837 0.95263 0.94736 1.67378 1.04677 1.23073 1.30180 0.93116 0.89155 0.92463 0.88345 0.91434 0.88634 0.91604 0.82235 0.83145 0.72567 0.75388 0.95967 0.94210 0.90844 0.92337 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.42 -7.32 10.67 -144.34 -1.54 -8.86 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.07 1.09 5.69 71.98 0.41 1.50 16 5 O -0.31 -6.70 10.08 -85.96 -0.87 -7.57 16 6 C 0.30 6.82 7.49 84.80 0.63 7.45 16 7 C -0.17 -3.75 10.03 22.45 0.23 -3.52 16 8 C -0.05 -1.13 8.80 22.57 0.20 -0.93 16 9 C 0.04 1.00 6.32 38.26 0.24 1.24 16 10 N -0.62 -15.13 5.34 -304.46 -1.62 -16.76 16 11 C 0.52 16.26 7.74 87.23 0.68 16.93 16 12 O -0.52 -17.44 13.95 -3.37 -0.05 -17.49 16 13 C 0.50 19.00 7.85 87.23 0.68 19.69 16 14 O -0.55 -23.55 16.14 -3.28 -0.05 -23.60 16 15 N -0.67 -27.92 5.06 -447.56 -2.27 -30.19 16 16 C 0.27 13.34 2.56 44.25 0.11 13.45 16 17 H 0.02 1.00 7.58 -2.39 -0.02 0.98 16 18 C -0.14 -6.62 9.26 71.98 0.67 -5.95 16 19 C -0.55 -28.67 8.73 25.60 0.22 -28.45 16 20 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 21 C 0.02 1.08 5.30 84.65 0.45 1.53 16 22 N -0.91 -50.43 11.32 21.45 0.24 -50.19 16 23 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.13 2.60 11.12 84.80 0.94 3.55 16 28 N -0.53 -11.47 9.20 -308.38 -2.84 -14.31 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.15 3.82 6.31 -2.91 -0.02 3.81 16 38 H 0.43 8.93 8.30 -92.71 -0.77 8.16 16 39 H 0.41 15.79 8.01 -92.71 -0.74 15.05 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 3.89 6.07 -2.39 -0.01 3.87 16 43 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -66.46 382.48 -0.25 -66.72 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.46 Total: 29.63 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: 7.17 Total: 29.19 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -6.48 Total: -111.44 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.51 Total: -57.52 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.46 -0.25 -66.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438878305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.359 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds