Wall clock time and date at job start Tue Mar 31 2020 21:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00223 * 2 1 4 4 C 1.53004 * 109.47000 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46724 * 65.00607 * 4 3 2 6 6 C 1.35736 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38932 * 119.60905 * 179.97438 * 6 5 4 8 8 C 1.38282 * 119.19421 * 179.97438 * 7 6 5 9 9 C 1.39441 * 118.42488 * 0.02562 * 8 7 6 10 10 N 1.39912 * 120.43576 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99823 * 34.95897 * 10 9 8 12 12 O 1.21394 * 119.99906 * 355.39901 * 11 10 9 13 13 C 1.49333 * 120.00109 * 175.39222 * 11 10 9 14 14 O 1.21362 * 119.99722 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00109 * 179.97438 * 13 11 10 16 16 C 1.46500 * 120.00013 * 179.72576 * 15 13 11 17 17 H 1.08997 * 109.47058 * 35.00069 * 16 15 13 18 18 C 1.53004 * 109.47087 * 275.00114 * 16 15 13 19 19 C 1.50699 * 109.47181 * 155.00395 * 16 15 13 20 20 H 1.08005 * 119.99788 * 5.27643 * 19 16 15 21 21 C 1.37879 * 120.00111 * 185.27876 * 19 16 15 22 22 N 1.31515 * 119.99778 * 5.10673 * 21 19 16 23 23 Si 1.86797 * 120.00051 * 185.11482 * 21 19 16 24 24 H 1.48501 * 109.47393 * 94.99542 * 23 21 19 25 25 H 1.48494 * 109.47391 * 214.99709 * 23 21 19 26 26 H 1.48501 * 109.46975 * 334.99741 * 23 21 19 27 27 C 1.38737 * 119.14015 * 0.24874 * 9 8 7 28 28 N 1.31933 * 120.71929 * 359.45598 * 27 9 8 29 29 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47477 * 300.00266 * 1 2 3 31 31 H 1.09004 * 109.46948 * 59.99853 * 1 2 3 32 32 H 1.08997 * 109.47040 * 60.00024 * 3 2 1 33 33 H 1.08992 * 109.47250 * 299.99944 * 3 2 1 34 34 H 1.08999 * 109.47515 * 305.00057 * 4 3 2 35 35 H 1.09009 * 109.46989 * 184.99558 * 4 3 2 36 36 H 1.08000 * 120.39928 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.79079 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99932 * 214.96747 * 10 9 8 39 39 H 0.96999 * 119.99976 * 0.02562 * 15 13 11 40 40 H 1.09005 * 109.46743 * 174.97507 * 18 16 15 41 41 H 1.08993 * 109.47217 * 294.98061 * 18 16 15 42 42 H 1.09002 * 109.46965 * 54.98133 * 18 16 15 43 43 H 0.96998 * 119.99378 * 180.02562 * 22 21 19 44 44 H 1.07987 * 119.63882 * 179.74806 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9657 0.5792 -1.2202 6 6 5.3013 0.3983 -1.3811 7 6 5.7793 -0.1859 -2.5475 8 6 7.1416 -0.3655 -2.7027 9 6 7.9872 0.0494 -1.6746 10 7 9.3723 -0.1126 -1.7872 11 6 9.9707 0.0181 -2.9877 12 8 9.3000 0.1934 -3.9842 13 6 11.4587 -0.0526 -3.0920 14 8 12.1291 -0.2282 -2.0957 15 7 12.0570 0.0776 -4.2926 16 6 13.5172 0.0143 -4.3941 17 1 13.9013 -0.6997 -3.6656 18 6 14.1084 1.3973 -4.1134 19 6 13.9056 -0.4258 -5.7820 20 1 13.1469 -0.5548 -6.5398 21 6 15.2296 -0.6637 -6.0846 22 7 16.1412 -0.6046 -5.1384 23 14 15.7286 -1.0698 -7.8383 24 1 16.1613 0.1710 -8.5298 25 1 16.8496 -2.0436 -7.8211 26 1 14.5714 -1.6598 -8.5581 27 6 7.4369 0.6199 -0.5360 28 7 6.1319 0.7804 -0.4259 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8508 0.5684 0.8427 35 1 3.9786 2.1765 0.0901 36 1 5.0951 -0.4959 -3.3235 37 1 7.5412 -0.8165 -3.5990 38 1 9.9019 -0.3192 -1.0012 39 1 11.5212 0.2176 -5.0889 40 1 15.1964 1.3316 -4.1008 41 1 13.7953 2.0914 -4.8933 42 1 13.7547 1.7541 -3.1461 43 1 17.0726 -0.7717 -5.3514 44 1 8.0840 0.9404 0.2670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438878307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:39 Heat of formation + Delta-G solvation = -110.094875 kcal Electronic energy + Delta-G solvation = -27650.970706 eV Core-core repulsion = 23376.598327 eV Total energy + Delta-G solvation = -4274.372379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21889 -40.20001 -38.82880 -38.17124 -37.49110 -35.44205 -34.65477 -32.52633 -32.43499 -31.19384 -29.48271 -29.08068 -26.78040 -25.38382 -24.99331 -24.48825 -22.92095 -22.54490 -20.88524 -19.74931 -18.98175 -18.67883 -17.48501 -17.26706 -17.04365 -16.42573 -16.10723 -15.82526 -15.74370 -15.49670 -15.38600 -15.15424 -14.66380 -14.30550 -14.00199 -13.76539 -13.49867 -13.41327 -13.25336 -12.84711 -12.78274 -12.50857 -12.02352 -11.91943 -11.84375 -11.39826 -11.33743 -11.14293 -11.09598 -10.85351 -10.69364 -10.45109 -10.33008 -10.19214 -10.02856 -9.72525 -9.20725 -9.10454 -8.65283 -8.21346 -8.14392 -6.21947 -4.29311 0.81674 1.03865 1.78885 2.51852 2.79586 3.22077 3.28723 3.29528 3.32245 3.48249 3.67452 3.96158 4.09258 4.30882 4.50268 4.63159 4.69584 4.78186 4.80557 4.90469 4.92012 4.99422 5.07733 5.12369 5.13251 5.25551 5.29771 5.43526 5.55409 5.84189 6.00229 6.37604 6.64848 6.65180 6.73772 6.91850 6.94236 7.04607 7.14931 7.33380 7.57433 7.58027 7.66678 7.82307 7.93081 8.37810 8.56823 8.80989 9.37207 10.86401 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.001699 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.470274 B =16472.186981 C =16991.217239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.060 3.940 4 C 0.073 3.927 5 O -0.298 6.298 6 C 0.305 3.695 7 C -0.168 4.168 8 C -0.042 4.042 9 C 0.061 3.939 10 N -0.644 5.644 11 C 0.509 3.491 12 O -0.508 6.508 13 C 0.496 3.504 14 O -0.534 6.534 15 N -0.667 5.667 16 C 0.259 3.741 17 H 0.061 0.939 18 C -0.143 4.143 19 C -0.538 4.538 20 H 0.065 0.935 21 C 0.069 3.931 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.272 1.272 27 C 0.121 3.879 28 N -0.524 5.524 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.425 0.575 39 H 0.402 0.598 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.019 0.981 43 H 0.266 0.734 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.893 3.484 10.634 28.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.016 4.016 4 C -0.002 4.002 5 O -0.206 6.206 6 C 0.126 3.874 7 C -0.189 4.189 8 C -0.069 4.069 9 C -0.036 4.036 10 N -0.292 5.292 11 C 0.292 3.708 12 O -0.382 6.382 13 C 0.274 3.726 14 O -0.412 6.412 15 N -0.315 5.315 16 C 0.159 3.841 17 H 0.078 0.922 18 C -0.201 4.201 19 C -0.577 4.577 20 H 0.083 0.917 21 C -0.135 4.135 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.037 4.037 28 N -0.247 5.247 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.164 0.836 37 H 0.176 0.824 38 H 0.264 0.736 39 H 0.237 0.763 40 H 0.098 0.902 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -26.055 3.624 11.186 28.586 hybrid contribution 0.530 -0.199 -1.419 1.528 sum -25.526 3.425 9.767 27.544 Atomic orbital electron populations 1.22763 0.80834 1.03016 0.99968 1.87974 1.19829 1.27215 1.95414 1.22654 0.91872 0.85711 1.01403 1.22642 0.92457 0.98959 0.86151 1.86290 1.17714 1.76643 1.39917 1.19790 0.83916 0.93165 0.90531 1.21006 0.95595 1.04568 0.97730 1.21642 0.91327 0.94759 0.99161 1.18643 0.83871 1.03167 0.97906 1.43060 1.05284 1.68868 1.11985 1.21023 0.90388 0.76338 0.83039 1.90720 1.65872 1.45846 1.35721 1.19598 0.86588 0.80666 0.85771 1.90742 1.64935 1.49645 1.35899 1.46501 1.11216 1.66520 1.07284 1.19012 0.71783 0.94845 0.98491 0.92165 1.22038 1.03295 0.97664 0.97129 1.21165 0.93233 1.47918 0.95363 0.91706 1.24880 0.96228 0.94592 0.97768 1.69950 1.01806 1.48039 1.32089 0.86404 0.78370 0.78250 0.83949 1.20478 1.21036 1.19705 1.22223 0.89961 0.94736 0.96762 1.67288 1.04531 1.22447 1.30453 0.89462 0.94058 0.93916 0.91024 0.92137 0.90628 0.89964 0.83644 0.82357 0.73645 0.76323 0.90193 0.94712 0.96206 0.92438 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.52 10.67 -40.09 -0.43 -3.94 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.07 0.64 5.69 37.16 0.21 0.85 16 5 O -0.30 -3.41 10.08 -23.77 -0.24 -3.65 16 6 C 0.31 3.66 7.49 -17.12 -0.13 3.53 16 7 C -0.17 -1.92 10.03 -39.31 -0.39 -2.32 16 8 C -0.04 -0.52 8.80 -39.12 -0.34 -0.86 16 9 C 0.06 0.74 6.32 -83.54 -0.53 0.21 16 10 N -0.64 -8.23 5.34 -10.18 -0.05 -8.29 16 11 C 0.51 8.13 7.74 -11.64 -0.09 8.04 16 12 O -0.51 -8.65 13.95 5.46 0.08 -8.58 16 13 C 0.50 9.47 7.85 -11.64 -0.09 9.38 16 14 O -0.53 -11.27 16.14 5.49 0.09 -11.18 16 15 N -0.67 -13.76 5.06 -55.40 -0.28 -14.04 16 16 C 0.26 6.35 2.44 -69.08 -0.17 6.18 16 17 H 0.06 1.67 7.55 -51.93 -0.39 1.28 16 18 C -0.14 -3.35 9.26 37.16 0.34 -3.00 16 19 C -0.54 -13.94 8.67 -34.44 -0.30 -14.24 16 20 H 0.06 1.62 7.73 -52.48 -0.41 1.22 16 21 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 22 N -0.88 -24.23 11.98 55.43 0.66 -23.57 16 23 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.12 1.31 11.12 -17.32 -0.19 1.12 16 28 N -0.52 -6.14 9.20 -13.15 -0.12 -6.26 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.63 8.10 -51.92 -0.42 0.21 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.16 2.06 6.32 -52.49 -0.33 1.72 16 38 H 0.43 4.71 8.30 -40.82 -0.34 4.37 16 39 H 0.40 7.71 8.00 -40.82 -0.33 7.39 16 40 H 0.08 2.02 6.83 -51.93 -0.35 1.67 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -31.13 383.65 -5.89 -37.02 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.93 Total: 8.85 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: -0.43 Total: 12.56 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.21 Total: -52.15 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.50 Total: -27.35 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.13 -5.89 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438878307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.073 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds