Wall clock time and date at job start Tue Mar 31 2020 21:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00223 * 2 1 4 4 C 1.53004 * 109.47000 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46724 * 65.00607 * 4 3 2 6 6 C 1.35736 * 117.00172 * 179.97438 * 5 4 3 7 7 C 1.38932 * 119.60905 * 179.97438 * 6 5 4 8 8 C 1.38282 * 119.19421 * 179.97438 * 7 6 5 9 9 C 1.39441 * 118.42488 * 0.02562 * 8 7 6 10 10 N 1.39912 * 120.43576 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99823 * 34.95897 * 10 9 8 12 12 O 1.21394 * 119.99906 * 355.39901 * 11 10 9 13 13 C 1.49333 * 120.00109 * 175.39222 * 11 10 9 14 14 O 1.21362 * 119.99722 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00109 * 179.97438 * 13 11 10 16 16 C 1.46500 * 120.00013 * 179.72576 * 15 13 11 17 17 H 1.08997 * 109.47058 * 35.00069 * 16 15 13 18 18 C 1.53004 * 109.47087 * 275.00114 * 16 15 13 19 19 C 1.50699 * 109.47181 * 155.00395 * 16 15 13 20 20 H 1.08005 * 119.99788 * 5.27643 * 19 16 15 21 21 C 1.37879 * 120.00111 * 185.27876 * 19 16 15 22 22 N 1.31515 * 119.99778 * 5.10673 * 21 19 16 23 23 Si 1.86797 * 120.00051 * 185.11482 * 21 19 16 24 24 H 1.48501 * 109.47393 * 94.99542 * 23 21 19 25 25 H 1.48494 * 109.47391 * 214.99709 * 23 21 19 26 26 H 1.48501 * 109.46975 * 334.99741 * 23 21 19 27 27 C 1.38737 * 119.14015 * 0.24874 * 9 8 7 28 28 N 1.31933 * 120.71929 * 359.45598 * 27 9 8 29 29 H 1.08997 * 109.47171 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47477 * 300.00266 * 1 2 3 31 31 H 1.09004 * 109.46948 * 59.99853 * 1 2 3 32 32 H 1.08997 * 109.47040 * 60.00024 * 3 2 1 33 33 H 1.08992 * 109.47250 * 299.99944 * 3 2 1 34 34 H 1.08999 * 109.47515 * 305.00057 * 4 3 2 35 35 H 1.09009 * 109.46989 * 184.99558 * 4 3 2 36 36 H 1.08000 * 120.39928 * 359.97438 * 7 6 5 37 37 H 1.08000 * 120.79079 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99932 * 214.96747 * 10 9 8 39 39 H 0.96999 * 119.99976 * 0.02562 * 15 13 11 40 40 H 1.09005 * 109.46743 * 174.97507 * 18 16 15 41 41 H 1.08993 * 109.47217 * 294.98061 * 18 16 15 42 42 H 1.09002 * 109.46965 * 54.98133 * 18 16 15 43 43 H 0.96998 * 119.99378 * 180.02562 * 22 21 19 44 44 H 1.07987 * 119.63882 * 179.74806 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9657 0.5792 -1.2202 6 6 5.3013 0.3983 -1.3811 7 6 5.7793 -0.1859 -2.5475 8 6 7.1416 -0.3655 -2.7027 9 6 7.9872 0.0494 -1.6746 10 7 9.3723 -0.1126 -1.7872 11 6 9.9707 0.0181 -2.9877 12 8 9.3000 0.1934 -3.9842 13 6 11.4587 -0.0526 -3.0920 14 8 12.1291 -0.2282 -2.0957 15 7 12.0570 0.0776 -4.2926 16 6 13.5172 0.0143 -4.3941 17 1 13.9013 -0.6997 -3.6656 18 6 14.1084 1.3973 -4.1134 19 6 13.9056 -0.4258 -5.7820 20 1 13.1469 -0.5548 -6.5398 21 6 15.2296 -0.6637 -6.0846 22 7 16.1412 -0.6046 -5.1384 23 14 15.7286 -1.0698 -7.8383 24 1 16.1613 0.1710 -8.5298 25 1 16.8496 -2.0436 -7.8211 26 1 14.5714 -1.6598 -8.5581 27 6 7.4369 0.6199 -0.5360 28 7 6.1319 0.7804 -0.4259 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 3.8508 0.5684 0.8427 35 1 3.9786 2.1765 0.0901 36 1 5.0951 -0.4959 -3.3235 37 1 7.5412 -0.8165 -3.5990 38 1 9.9019 -0.3192 -1.0012 39 1 11.5212 0.2176 -5.0889 40 1 15.1964 1.3316 -4.1008 41 1 13.7953 2.0914 -4.8933 42 1 13.7547 1.7541 -3.1461 43 1 17.0726 -0.7717 -5.3514 44 1 8.0840 0.9404 0.2670 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438878307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:37 Heat of formation + Delta-G solvation = -134.527533 kcal Electronic energy + Delta-G solvation = -27652.030186 eV Core-core repulsion = 23376.598327 eV Total energy + Delta-G solvation = -4275.431859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29934 -41.35841 -39.96334 -39.18613 -38.30603 -37.03044 -35.99877 -34.31426 -33.42767 -31.90634 -31.16824 -30.15061 -27.34615 -27.26057 -26.34610 -25.32744 -23.99979 -23.37804 -22.42679 -21.28175 -20.30275 -19.61148 -18.68679 -18.24974 -17.86928 -17.79403 -17.37521 -16.96331 -16.92357 -16.61397 -16.43498 -16.05702 -15.93748 -15.55932 -15.22577 -14.96724 -14.64559 -14.45376 -14.39386 -14.26866 -13.82431 -13.72214 -13.29354 -13.03314 -12.99096 -12.80959 -12.65550 -12.55384 -12.52193 -12.37185 -12.13020 -12.07527 -11.61942 -11.16294 -11.02175 -10.80256 -10.68016 -10.63045 -10.43225 -9.98053 -9.11260 -8.21873 -6.36247 -0.19449 0.11296 0.49162 1.25624 1.45821 1.47349 1.57691 1.98282 2.11992 2.39534 2.65910 2.71194 2.80436 3.11444 3.24383 3.46039 3.75969 3.90525 3.91625 4.05644 4.16609 4.38730 4.42513 4.52977 4.56660 4.60070 4.61183 4.70904 4.77935 4.84993 4.87694 4.91435 4.99013 5.04111 5.30758 5.38480 5.44699 5.59726 5.71225 5.92092 5.97650 6.13730 6.22838 6.50227 6.66543 6.68892 6.77144 7.07674 7.35436 8.86811 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.001699 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.470274 B =16472.186981 C =16991.217239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.061 3.939 4 C 0.069 3.931 5 O -0.309 6.309 6 C 0.300 3.700 7 C -0.171 4.171 8 C -0.048 4.048 9 C 0.044 3.956 10 N -0.624 5.624 11 C 0.520 3.480 12 O -0.519 6.519 13 C 0.497 3.503 14 O -0.555 6.555 15 N -0.670 5.670 16 C 0.265 3.735 17 H 0.020 0.980 18 C -0.130 4.130 19 C -0.552 4.552 20 H 0.071 0.929 21 C 0.021 3.979 22 N -0.914 5.914 23 Si 0.969 3.031 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.265 1.265 27 C 0.133 3.867 28 N -0.529 5.529 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.434 0.566 39 H 0.410 0.590 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.026 0.974 43 H 0.267 0.733 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.680 4.089 10.666 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.006 4.006 5 O -0.216 6.216 6 C 0.121 3.879 7 C -0.192 4.192 8 C -0.075 4.075 9 C -0.052 4.052 10 N -0.273 5.273 11 C 0.302 3.698 12 O -0.394 6.394 13 C 0.277 3.723 14 O -0.435 6.435 15 N -0.319 5.319 16 C 0.163 3.837 17 H 0.038 0.962 18 C -0.189 4.189 19 C -0.590 4.590 20 H 0.089 0.911 21 C -0.180 4.180 22 N -0.552 5.552 23 Si 0.794 3.206 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.190 1.190 27 C -0.025 4.025 28 N -0.253 5.253 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.178 0.822 37 H 0.168 0.832 38 H 0.274 0.726 39 H 0.246 0.754 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -27.903 4.233 11.246 30.381 hybrid contribution 0.957 -0.391 -1.307 1.666 sum -26.946 3.843 9.939 28.977 Atomic orbital electron populations 1.22922 0.79270 1.03755 1.01088 1.87919 1.21692 1.28506 1.95682 1.22766 0.90528 0.85316 1.02948 1.22866 0.93815 0.99076 0.84878 1.86289 1.17340 1.76778 1.41241 1.19999 0.84355 0.92853 0.90661 1.21136 0.95469 1.04470 0.98161 1.21642 0.91869 0.94916 0.99032 1.18735 0.83055 1.04670 0.98753 1.42828 1.05794 1.67534 1.11099 1.20214 0.88501 0.77095 0.83983 1.90729 1.65427 1.46950 1.36311 1.20060 0.88177 0.79321 0.84779 1.90726 1.66081 1.50188 1.36481 1.46246 1.09894 1.67365 1.08404 1.18645 0.73911 0.94213 0.96933 0.96181 1.21862 1.01731 0.97442 0.97839 1.21482 0.93660 1.47828 0.96023 0.91080 1.25709 0.96257 0.94432 1.01560 1.70073 1.02108 1.48929 1.34061 0.85373 0.77959 0.78067 0.79209 1.19827 1.21055 1.18967 1.22637 0.89947 0.93184 0.96708 1.67378 1.04758 1.22727 1.30439 0.89046 0.92470 0.93217 0.88352 0.91581 0.91307 0.88918 0.82236 0.83150 0.72588 0.75382 0.92406 0.93666 0.95506 0.92374 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -7.12 10.67 -144.34 -1.54 -8.66 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.07 1.09 5.69 71.98 0.41 1.50 16 5 O -0.31 -6.70 10.08 -85.96 -0.87 -7.57 16 6 C 0.30 6.81 7.49 84.80 0.63 7.44 16 7 C -0.17 -3.74 10.03 22.45 0.23 -3.51 16 8 C -0.05 -1.13 8.80 22.57 0.20 -0.93 16 9 C 0.04 1.00 6.32 38.26 0.24 1.24 16 10 N -0.62 -15.13 5.34 -304.45 -1.62 -16.76 16 11 C 0.52 16.17 7.74 87.23 0.68 16.85 16 12 O -0.52 -17.25 13.95 -3.38 -0.05 -17.29 16 13 C 0.50 18.93 7.85 87.23 0.68 19.61 16 14 O -0.56 -23.57 16.14 -3.29 -0.05 -23.62 16 15 N -0.67 -27.72 5.06 -447.55 -2.26 -29.98 16 16 C 0.27 13.20 2.44 44.25 0.11 13.31 16 17 H 0.02 1.16 7.55 -2.39 -0.02 1.15 16 18 C -0.13 -6.16 9.26 71.98 0.67 -5.50 16 19 C -0.55 -28.64 8.67 25.60 0.22 -28.42 16 20 H 0.07 3.52 7.73 -2.91 -0.02 3.50 16 21 C 0.02 1.13 5.29 84.66 0.45 1.57 16 22 N -0.91 -50.97 11.98 21.45 0.26 -50.71 16 23 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 C 0.13 2.60 11.12 84.80 0.94 3.54 16 28 N -0.53 -11.45 9.20 -308.37 -2.84 -14.29 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.09 1.25 8.10 -2.38 -0.02 1.23 16 36 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.15 3.82 6.32 -2.91 -0.02 3.80 16 38 H 0.43 8.98 8.30 -92.71 -0.77 8.21 16 39 H 0.41 15.61 8.00 -92.71 -0.74 14.87 16 40 H 0.06 2.98 6.83 -2.38 -0.02 2.96 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.19 2.52 8.06 -2.92 -0.02 2.49 16 Total: -1.00 -66.56 383.65 -0.25 -66.81 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.46 Total: 29.24 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: 7.16 Total: 29.40 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -6.47 Total: -111.74 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -2.51 Total: -57.14 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Total: -66.56 -0.25 -66.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438878307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.720 kcal (2) G-P(sol) polarization free energy of solvation -66.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds