Wall clock time and date at job start Tue Mar 31 2020 22:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47226 * 89.99205 * 9 7 5 11 11 H 1.48494 * 109.47051 * 209.99874 * 9 7 5 12 12 H 1.48508 * 109.46947 * 329.99558 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 N 1.46904 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.48244 * 110.99921 * 69.87320 * 16 15 13 18 18 C 1.51306 * 104.76477 * 145.28980 * 17 16 15 19 19 O 1.21282 * 125.74405 * 163.21487 * 18 17 16 20 20 N 1.34848 * 108.50271 * 343.23686 * 18 17 16 21 21 C 1.46502 * 125.20314 * 179.53573 * 20 18 17 22 22 C 1.53007 * 109.46945 * 90.02544 * 21 20 18 23 23 F 1.39896 * 109.46907 * 59.99929 * 22 21 20 24 24 F 1.39894 * 109.47214 * 179.97438 * 22 21 20 25 25 F 1.39896 * 109.46830 * 300.00069 * 22 21 20 26 26 C 1.46797 * 109.59032 * 359.57434 * 20 18 17 27 27 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 28 28 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 31 31 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 32 32 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 33 33 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 34 34 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 36 36 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 37 37 H 1.09008 * 110.37611 * 264.11424 * 17 16 15 38 38 H 1.08998 * 110.37726 * 26.35131 * 17 16 15 39 39 H 1.08993 * 109.47147 * 210.02294 * 21 20 18 40 40 H 1.08997 * 109.47538 * 330.02582 * 21 20 18 41 41 H 1.08999 * 110.11871 * 258.43023 * 26 20 18 42 42 H 1.08992 * 110.12174 * 136.77079 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 5.9778 0.8765 -4.2593 11 1 6.3930 3.2649 -4.1986 12 1 6.7739 1.9173 -2.2188 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 7 2.3058 2.2076 3.5889 17 6 1.3212 3.3121 3.6803 18 6 1.1806 3.5817 5.1625 19 8 0.7019 4.5793 5.6590 20 7 1.6778 2.5260 5.8385 21 6 1.7330 2.4076 7.2977 22 6 0.4475 1.7508 7.8050 23 9 0.3190 0.4783 7.2383 24 9 0.5004 1.6371 9.1983 25 9 -0.6519 2.5361 7.4421 26 6 2.1560 1.5142 4.8886 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.5819 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6757 3.5169 -4.4434 35 1 0.9365 1.0186 2.5279 36 1 2.6121 0.4182 2.5322 37 1 1.6957 4.1979 3.1672 38 1 0.3653 3.0045 3.2564 39 1 2.5895 1.7957 7.5804 40 1 1.8331 3.3990 7.7393 41 1 1.4278 0.7079 4.8015 42 1 3.1175 1.1181 5.2151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488162546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:59 Heat of formation + Delta-G solvation = -188.759978 kcal Electronic energy + Delta-G solvation = -30176.797767 eV Core-core repulsion = 25357.157473 eV Total energy + Delta-G solvation = -4819.640294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -50.45617 -48.00480 -47.91501 -41.03921 -39.13902 -37.27281 -35.48661 -34.91917 -32.84170 -30.80927 -30.15991 -28.61677 -27.93706 -26.28947 -24.10025 -23.24904 -23.06026 -22.01275 -20.63747 -18.98754 -18.88021 -18.47752 -18.21987 -16.92564 -16.78442 -16.50917 -16.16750 -15.80552 -15.54135 -15.05360 -14.84701 -14.80673 -14.42022 -14.35916 -14.33337 -14.09051 -14.08948 -13.99259 -13.78855 -13.52535 -13.26968 -13.14349 -12.99124 -12.70608 -12.51928 -12.35866 -12.05348 -11.77380 -11.53978 -11.23664 -10.95204 -10.80402 -10.57219 -10.24710 -10.15370 -9.77404 -9.66425 -9.06894 -8.68349 -8.45797 -7.73310 -6.06694 -4.11490 1.93302 2.09433 2.51551 3.23748 3.28759 3.34485 3.36321 3.37179 3.40917 3.52902 3.83696 3.94254 4.00718 4.41649 4.45325 4.63320 4.74669 4.78430 4.93486 4.99394 5.10083 5.18277 5.27884 5.33039 5.51084 5.55517 5.65902 5.69408 5.92534 6.09396 6.15449 6.37176 6.43950 6.55556 7.02004 7.39775 7.48761 7.66447 7.89481 8.20144 8.33632 8.86480 9.02405 9.53834 11.01432 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002553 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.585455 B =10962.807860 C =11310.489069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.521 6.521 15 C 0.023 3.977 16 N -0.481 5.481 17 C 0.010 3.990 18 C 0.525 3.475 19 O -0.503 6.503 20 N -0.632 5.632 21 C 0.096 3.904 22 C 0.431 3.569 23 F -0.183 7.183 24 F -0.180 7.180 25 F -0.175 7.175 26 C 0.256 3.744 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -9.006 21.024 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.108 4.108 16 N -0.207 5.207 17 C -0.121 4.121 18 C 0.313 3.687 19 O -0.375 6.375 20 N -0.368 5.368 21 C -0.030 4.030 22 C 0.375 3.625 23 F -0.164 7.164 24 F -0.162 7.162 25 F -0.157 7.157 26 C 0.043 3.957 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.155 0.845 38 H 0.107 0.893 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.078 0.922 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.505 -7.540 21.056 23.033 hybrid contribution -0.075 -0.878 -0.205 0.904 sum -5.580 -8.418 20.851 23.168 Atomic orbital electron populations 1.22231 0.96807 1.01488 1.02278 1.21433 0.93443 0.84255 1.02771 1.48255 1.63833 1.13262 1.07607 1.19272 0.96317 0.93621 0.77876 1.21419 0.96884 1.31945 1.06257 0.92427 1.24933 0.97851 0.94883 0.96428 1.69925 1.35739 1.33386 1.14338 0.86499 0.84693 0.77646 0.78598 1.20698 1.21112 1.19847 1.19861 0.79333 0.87143 0.84455 1.90694 1.44555 1.17685 1.86715 1.22472 1.01262 0.96396 0.90715 1.65494 1.46308 1.08310 1.00584 1.23207 0.96637 0.99469 0.92761 1.21347 0.75571 0.81849 0.89899 1.90772 1.43539 1.28078 1.75084 1.48382 1.63227 1.20867 1.04353 1.22411 0.93910 1.05389 0.81255 1.21353 0.88219 0.77311 0.75599 1.93188 1.96640 1.41831 1.84757 1.93200 1.96659 1.96049 1.30278 1.93248 1.57046 1.74040 1.91331 1.23058 1.00289 0.88467 0.83858 0.93332 0.91894 0.92088 0.89736 0.91857 0.94999 0.93849 0.92697 0.91340 0.87231 0.84499 0.89330 0.85273 0.85227 0.92166 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.11 1.48 5.93 -4.04 -0.02 1.45 16 3 N -0.60 -11.47 2.46 -175.06 -0.43 -11.90 16 4 C 0.25 6.16 5.16 -5.20 -0.03 6.13 16 5 C -0.53 -14.40 9.39 -34.44 -0.32 -14.73 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.51 9.43 7.48 -10.98 -0.08 9.35 16 14 O -0.52 -12.08 14.69 5.56 0.08 -12.00 16 15 C 0.02 0.28 3.66 -4.98 -0.02 0.26 16 16 N -0.48 -5.97 5.23 -238.67 -1.25 -7.22 16 17 C 0.01 0.13 5.72 -3.94 -0.02 0.10 16 18 C 0.53 6.85 7.94 -10.66 -0.08 6.77 16 19 O -0.50 -8.08 17.74 5.56 0.10 -7.98 16 20 N -0.63 -6.09 2.83 -176.03 -0.50 -6.59 16 21 C 0.10 0.65 6.01 -4.04 -0.02 0.63 16 22 C 0.43 3.64 3.29 37.16 0.12 3.76 16 23 F -0.18 -1.58 17.17 2.25 0.04 -1.54 16 24 F -0.18 -1.48 17.32 2.25 0.04 -1.44 16 25 F -0.18 -2.00 17.00 2.25 0.04 -1.96 16 26 C 0.26 2.18 7.19 -61.70 -0.44 1.74 16 27 H 0.05 0.53 7.20 -51.93 -0.37 0.16 16 28 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 31 H 0.06 0.69 6.44 -51.92 -0.33 0.35 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.07 0.68 6.86 -51.93 -0.36 0.33 16 36 H 0.11 1.10 7.39 -51.93 -0.38 0.72 16 37 H 0.14 2.15 7.46 -51.92 -0.39 1.76 16 38 H 0.09 1.08 7.61 -51.93 -0.40 0.68 16 39 H 0.13 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.13 0.85 8.02 -51.93 -0.42 0.44 16 41 H 0.06 0.43 7.79 -51.93 -0.40 0.02 16 42 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.08 15.07 5.53 5.53 Total: -1.00 -34.95 367.08 -6.79 -41.74 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.51 Total: -3.16 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -0.64 Total: 15.47 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -1.44 Total: -51.08 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.18 Total: -19.98 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.12 Total: -4.95 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.95 -6.79 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488162546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.022 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds