Wall clock time and date at job start Tue Mar 31 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47226 * 89.99205 * 9 7 5 11 11 H 1.48494 * 109.47051 * 209.99874 * 9 7 5 12 12 H 1.48508 * 109.46947 * 329.99558 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 N 1.46904 * 109.46892 * 179.97438 * 15 13 3 17 17 C 1.48244 * 110.99921 * 69.87320 * 16 15 13 18 18 C 1.51306 * 104.76477 * 145.28980 * 17 16 15 19 19 O 1.21282 * 125.74405 * 163.21487 * 18 17 16 20 20 N 1.34848 * 108.50271 * 343.23686 * 18 17 16 21 21 C 1.46502 * 125.20314 * 179.53573 * 20 18 17 22 22 C 1.53007 * 109.46945 * 90.02544 * 21 20 18 23 23 F 1.39896 * 109.46907 * 59.99929 * 22 21 20 24 24 F 1.39894 * 109.47214 * 179.97438 * 22 21 20 25 25 F 1.39896 * 109.46830 * 300.00069 * 22 21 20 26 26 C 1.46797 * 109.59032 * 359.57434 * 20 18 17 27 27 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 28 28 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 29 29 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 31 31 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 32 32 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 33 33 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 34 34 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.46809 * 299.99238 * 15 13 3 36 36 H 1.08993 * 109.47525 * 59.99679 * 15 13 3 37 37 H 1.09008 * 110.37611 * 264.11424 * 17 16 15 38 38 H 1.08998 * 110.37726 * 26.35131 * 17 16 15 39 39 H 1.08993 * 109.47147 * 210.02294 * 21 20 18 40 40 H 1.08997 * 109.47538 * 330.02582 * 21 20 18 41 41 H 1.08999 * 110.11871 * 258.43023 * 26 20 18 42 42 H 1.08992 * 110.12174 * 136.77079 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 5.9778 0.8765 -4.2593 11 1 6.3930 3.2649 -4.1986 12 1 6.7739 1.9173 -2.2188 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 7 2.3058 2.2076 3.5889 17 6 1.3212 3.3121 3.6803 18 6 1.1806 3.5817 5.1625 19 8 0.7019 4.5793 5.6590 20 7 1.6778 2.5260 5.8385 21 6 1.7330 2.4076 7.2977 22 6 0.4475 1.7508 7.8050 23 9 0.3190 0.4783 7.2383 24 9 0.5004 1.6371 9.1983 25 9 -0.6519 2.5361 7.4421 26 6 2.1560 1.5142 4.8886 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 1.5819 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 3.6757 3.5169 -4.4434 35 1 0.9365 1.0186 2.5279 36 1 2.6121 0.4182 2.5322 37 1 1.6957 4.1979 3.1672 38 1 0.3653 3.0045 3.2564 39 1 2.5895 1.7957 7.5804 40 1 1.8331 3.3990 7.7393 41 1 1.4278 0.7079 4.8015 42 1 3.1175 1.1181 5.2151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488162546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:56 Heat of formation + Delta-G solvation = -214.447888 kcal Electronic energy + Delta-G solvation = -30177.911679 eV Core-core repulsion = 25357.157473 eV Total energy + Delta-G solvation = -4820.754206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.12533 -48.65585 -48.62568 -41.97481 -40.53022 -38.33343 -36.89943 -35.86399 -34.85624 -31.84207 -31.40856 -29.60644 -29.24598 -27.65980 -25.13183 -24.55408 -24.13430 -23.25366 -21.48470 -19.99227 -19.58059 -19.50204 -18.96337 -18.57454 -17.97064 -17.82036 -17.20498 -17.06703 -16.59629 -16.42374 -15.94450 -15.63931 -15.51848 -15.42344 -15.06410 -14.98322 -14.82441 -14.78047 -14.73877 -14.64125 -14.51911 -14.28598 -14.03584 -13.67068 -13.60467 -13.47245 -13.23412 -13.13531 -13.04153 -12.71351 -12.64558 -12.45817 -12.12441 -11.82337 -11.67057 -11.25742 -10.70656 -10.61139 -10.41423 -9.59822 -9.36043 -8.19214 -6.33604 1.07504 1.31487 1.38599 1.41884 1.51864 1.82999 1.90023 2.18606 2.41550 2.74923 2.76950 2.92908 3.10689 3.14301 3.20379 3.58584 3.85894 3.97604 4.10118 4.18480 4.22779 4.27468 4.28992 4.41532 4.48615 4.59417 4.69534 4.86536 4.99805 5.04365 5.10300 5.15590 5.27090 5.43448 5.59959 5.63776 5.69117 5.91384 6.10543 6.72824 6.75415 6.87435 7.33055 7.57145 8.87637 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.002553 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.585455 B =10962.807860 C =11310.489069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.056 0.944 7 C 0.005 3.995 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.495 3.505 14 O -0.580 6.580 15 C 0.039 3.961 16 N -0.503 5.503 17 C 0.011 3.989 18 C 0.524 3.476 19 O -0.544 6.544 20 N -0.623 5.623 21 C 0.095 3.905 22 C 0.432 3.568 23 F -0.181 7.181 24 F -0.179 7.179 25 F -0.197 7.197 26 C 0.255 3.745 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.019 0.981 33 H -0.006 1.006 34 H 0.265 0.735 35 H 0.102 0.898 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -12.470 23.086 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.576 4.576 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.195 1.195 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.091 4.091 16 N -0.230 5.230 17 C -0.119 4.119 18 C 0.312 3.688 19 O -0.419 6.419 20 N -0.358 5.358 21 C -0.029 4.029 22 C 0.376 3.624 23 F -0.163 7.163 24 F -0.160 7.160 25 F -0.179 7.179 26 C 0.045 3.955 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.127 0.873 32 H 0.037 0.963 33 H 0.012 0.988 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.164 0.836 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.193 0.807 40 H 0.148 0.852 41 H 0.106 0.894 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.553 -11.099 23.154 26.077 hybrid contribution -0.408 0.166 -0.807 0.919 sum -4.961 -10.933 22.347 25.368 Atomic orbital electron populations 1.22173 0.94927 1.03449 1.01523 1.21782 0.94966 0.81266 1.04337 1.48259 1.64091 1.15211 1.06045 1.18644 0.95124 0.91440 0.80547 1.21736 0.97939 1.31648 1.06302 0.92537 1.25863 1.02273 0.94585 0.96625 1.70056 1.37815 1.34444 1.14838 0.85429 0.79215 0.78007 0.78248 1.18865 1.21095 1.19521 1.21054 0.77679 0.86712 0.86221 1.90672 1.47041 1.20514 1.87762 1.22390 1.03985 0.96047 0.86708 1.65385 1.46350 1.08745 1.02475 1.22995 0.97028 0.98931 0.92983 1.21251 0.75401 0.82132 0.89989 1.90745 1.45624 1.29888 1.75665 1.48392 1.61719 1.19923 1.05758 1.22739 0.94503 1.06426 0.79222 1.21547 0.88010 0.77172 0.75666 1.93187 1.96639 1.41717 1.84730 1.93204 1.96606 1.96030 1.30196 1.93213 1.58406 1.74715 1.91550 1.23368 1.02817 0.87909 0.81427 0.92074 0.94747 0.88647 0.91140 0.87274 0.96285 0.98776 0.92568 0.88023 0.83571 0.88318 0.88676 0.80728 0.85176 0.89396 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 10.24 71.98 0.74 -2.68 16 2 C 0.10 2.54 5.93 86.38 0.51 3.05 16 3 N -0.60 -23.25 2.46 -826.16 -2.03 -25.28 16 4 C 0.26 13.78 5.16 85.63 0.44 14.22 16 5 C -0.54 -30.19 9.39 25.60 0.24 -29.95 16 6 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 9 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 10 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C 0.50 18.29 7.48 87.65 0.66 18.95 16 14 O -0.58 -28.19 14.69 -3.04 -0.04 -28.24 16 15 C 0.04 0.83 3.66 85.56 0.31 1.14 16 16 N -0.50 -11.28 5.23 -909.02 -4.75 -16.03 16 17 C 0.01 0.30 5.72 85.49 0.49 0.79 16 18 C 0.52 13.42 7.94 87.84 0.70 14.12 16 19 O -0.54 -17.90 17.74 -3.04 -0.05 -17.96 16 20 N -0.62 -10.24 2.83 -829.18 -2.35 -12.59 16 21 C 0.10 0.99 6.01 86.38 0.52 1.51 16 22 C 0.43 6.15 3.29 71.98 0.24 6.39 16 23 F -0.18 -2.49 17.17 44.97 0.77 -1.72 16 24 F -0.18 -2.52 17.32 44.97 0.78 -1.74 16 25 F -0.20 -4.28 17.00 44.97 0.76 -3.51 16 26 C 0.26 3.20 7.19 170.24 1.22 4.43 16 27 H 0.06 1.13 7.20 -2.39 -0.02 1.11 16 28 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 31 H 0.11 1.82 6.44 -2.38 -0.02 1.81 16 32 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 33 H -0.01 -0.36 7.42 -2.39 -0.02 -0.38 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.10 1.53 6.86 -2.39 -0.02 1.51 16 36 H 0.15 2.08 7.39 -2.39 -0.02 2.06 16 37 H 0.10 3.38 7.46 -2.38 -0.02 3.36 16 38 H 0.10 2.30 7.61 -2.39 -0.02 2.28 16 39 H 0.18 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.13 1.43 8.02 -2.39 -0.02 1.41 16 41 H 0.09 0.71 7.79 -2.39 -0.02 0.69 16 42 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.59 367.08 2.98 -80.61 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.05 Total: 3.27 kcal Atomic # 6 Polarization: 26.20 SS G_CDS: 6.53 Total: 32.73 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -8.85 Total: -109.85 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.10 Total: -46.19 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 2.32 Total: -6.96 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -83.59 2.98 -80.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488162546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.839 kcal (2) G-P(sol) polarization free energy of solvation -83.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds