Wall clock time and date at job start Tue Mar 31 2020 21:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47378 * 2 1 4 4 C 1.50695 * 109.47225 * 239.99813 * 2 1 3 5 5 O 1.21285 * 119.99927 * 268.51784 * 4 2 1 6 6 N 1.34779 * 120.00146 * 88.51720 * 4 2 1 7 7 C 1.46498 * 119.99928 * 354.95516 * 6 4 2 8 8 C 1.46508 * 119.99855 * 174.95853 * 6 4 2 9 9 C 1.50702 * 109.46911 * 89.99835 * 8 6 4 10 10 H 1.07997 * 120.00350 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99696 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99991 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00013 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46993 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46781 * 119.99867 * 13 11 9 16 16 H 1.48499 * 109.47072 * 240.00005 * 13 11 9 17 17 N 1.46904 * 109.47126 * 119.99699 * 2 1 3 18 18 C 1.48238 * 110.99934 * 167.64842 * 17 2 1 19 19 C 1.51307 * 104.76792 * 214.71206 * 18 17 2 20 20 O 1.21277 * 125.75301 * 196.78725 * 19 18 17 21 21 N 1.34856 * 108.49995 * 16.76208 * 19 18 17 22 22 C 1.46501 * 125.20310 * 180.39594 * 21 19 18 23 23 C 1.52998 * 109.47446 * 90.02506 * 22 21 19 24 24 F 1.39902 * 109.47403 * 59.99516 * 23 22 21 25 25 F 1.39905 * 109.47094 * 299.99746 * 23 22 21 26 26 F 1.39894 * 109.47333 * 179.97438 * 23 22 21 27 27 C 1.46796 * 109.58851 * 0.65526 * 21 19 18 28 28 H 1.09003 * 109.47048 * 184.62727 * 1 2 3 29 29 H 1.09001 * 109.47600 * 304.62931 * 1 2 3 30 30 H 1.08998 * 109.47307 * 64.63172 * 1 2 3 31 31 H 1.08994 * 109.46748 * 94.36095 * 7 6 4 32 32 H 1.09004 * 109.47065 * 214.36215 * 7 6 4 33 33 H 1.09002 * 109.47036 * 334.36117 * 7 6 4 34 34 H 1.09000 * 109.46496 * 210.00168 * 8 6 4 35 35 H 1.08998 * 109.47130 * 329.99966 * 8 6 4 36 36 H 0.96995 * 119.99889 * 179.97438 * 12 11 9 37 37 H 1.09000 * 110.38352 * 95.88960 * 18 17 2 38 38 H 1.09002 * 110.37853 * 333.53050 * 18 17 2 39 39 H 1.08999 * 109.47318 * 330.02091 * 22 21 19 40 40 H 1.09010 * 109.46441 * 210.02159 * 22 21 19 41 41 H 1.08998 * 110.11736 * 101.34395 * 27 21 19 42 42 H 1.08997 * 110.12020 * 223.00330 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2600 -1.9011 -1.1926 6 7 2.2284 -0.0227 -2.3728 7 6 1.8497 1.3903 -2.4514 8 6 2.8204 -0.6882 -3.5360 9 6 1.7270 -1.2888 -4.3815 10 1 0.6945 -1.1854 -4.0822 11 6 2.0449 -1.9701 -5.5373 12 7 3.3022 -2.0955 -5.9020 13 14 0.6896 -2.7139 -6.5858 14 1 -0.6288 -2.4334 -5.9625 15 1 0.7311 -2.1168 -7.9449 16 1 0.8890 -4.1822 -6.6838 17 7 2.0196 -0.6924 1.1995 18 6 3.4713 -0.9739 1.0950 19 6 3.6582 -2.3013 1.7968 20 8 4.7135 -2.7540 2.1872 21 7 2.4537 -2.8960 1.9155 22 6 2.2120 -4.1954 2.5474 23 6 1.9294 -3.9934 4.0374 24 9 0.8000 -3.1823 4.1921 25 9 3.0312 -3.3787 4.6419 26 9 1.6980 -5.2342 4.6407 27 6 1.4227 -2.0448 1.3093 28 1 -0.3633 -1.0243 0.0829 29 1 -0.3634 0.5840 0.8456 30 1 -0.3634 0.4403 -0.9285 31 1 2.7154 2.0117 -2.2227 32 1 1.4957 1.6162 -3.4573 33 1 1.0560 1.5942 -1.7326 34 1 3.3780 0.0392 -4.1259 35 1 3.4941 -1.4764 -3.1998 36 1 3.5258 -2.5752 -6.7149 37 1 4.0460 -0.1952 1.5963 38 1 3.7683 -1.0524 0.0492 39 1 3.0919 -4.8273 2.4269 40 1 1.3535 -4.6743 2.0764 41 1 1.1585 -2.4220 0.3214 42 1 0.5398 -2.0131 1.9475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488240020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:53 Heat of formation + Delta-G solvation = -182.221094 kcal Electronic energy + Delta-G solvation = -31190.403493 eV Core-core repulsion = 26371.046746 eV Total energy + Delta-G solvation = -4819.356747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.22148 -47.77154 -47.67534 -41.25548 -39.27686 -36.97348 -35.22399 -34.90207 -32.84318 -31.89332 -29.18803 -28.20309 -27.42432 -26.15659 -24.95436 -23.73226 -23.21431 -21.59744 -20.28152 -18.69376 -18.67269 -18.60435 -17.95100 -17.19853 -16.73706 -16.57169 -15.97444 -15.71855 -15.30487 -14.86746 -14.68834 -14.63324 -14.60285 -14.42033 -14.15308 -13.95784 -13.86273 -13.84754 -13.45651 -13.34880 -13.15841 -12.80744 -12.68568 -12.48645 -12.37252 -12.20369 -12.00261 -11.82376 -11.77755 -11.40147 -11.19322 -10.95683 -10.71502 -10.29103 -10.07624 -9.96612 -9.73369 -9.31544 -8.54840 -8.19423 -7.86769 -6.15409 -4.20775 2.21058 2.43323 2.77754 2.99375 3.21861 3.30011 3.32724 3.59690 3.63572 3.68725 3.79142 4.09545 4.23614 4.34535 4.61250 4.76750 4.83198 4.97055 5.05504 5.18709 5.19630 5.33416 5.38304 5.47576 5.55476 5.56869 5.71206 5.77396 5.89489 5.99560 6.06424 6.18057 6.59593 6.81474 6.85461 7.25361 7.32966 7.79261 7.95040 8.09230 8.15408 8.66409 8.85534 9.44727 10.92814 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.003282 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.665932 B = 8528.626404 C = 8999.192092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 H 0.114 0.886 4 C 0.476 3.524 5 O -0.539 6.539 6 N -0.592 5.592 7 C 0.076 3.924 8 C 0.244 3.756 9 C -0.527 4.527 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 N -0.479 5.479 18 C -0.005 4.005 19 C 0.535 3.465 20 O -0.513 6.513 21 N -0.621 5.621 22 C 0.096 3.904 23 C 0.432 3.568 24 F -0.181 7.181 25 F -0.176 7.176 26 F -0.183 7.183 27 C 0.241 3.759 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.101 0.899 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 3.556 16.257 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 H 0.132 0.868 4 C 0.261 3.739 5 O -0.419 6.419 6 N -0.323 5.323 7 C -0.068 4.068 8 C 0.125 3.875 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 N -0.204 5.204 18 C -0.135 4.135 19 C 0.323 3.677 20 O -0.386 6.386 21 N -0.357 5.357 22 C -0.030 4.030 23 C 0.376 3.624 24 F -0.163 7.163 25 F -0.157 7.157 26 F -0.164 7.164 27 C 0.030 3.970 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.354 2.938 16.823 17.897 hybrid contribution -0.644 -0.805 -1.235 1.609 sum -5.998 2.133 15.587 16.837 Atomic orbital electron populations 1.21835 0.91409 1.03526 1.03396 1.22239 0.98078 0.99660 0.86697 0.86833 1.21234 0.79364 0.88013 0.85249 1.90667 1.52398 1.14562 1.84227 1.48316 1.59811 1.10665 1.13530 1.21779 0.99364 0.82331 1.03344 1.19340 0.94034 0.93045 0.81105 1.21393 0.93288 1.35021 1.06843 0.92397 1.24941 0.95640 0.95917 0.97568 1.69934 1.16675 1.42046 1.24533 0.86442 0.81899 0.79083 0.79980 1.19807 1.20897 1.20865 1.66226 1.03840 1.15888 1.34439 1.23257 0.90965 0.95904 1.03368 1.20984 0.82890 0.86588 0.77285 1.90743 1.28337 1.69639 1.49926 1.48211 1.09945 1.19243 1.58265 1.22389 1.07662 0.86951 0.85954 1.21370 0.74513 0.73978 0.92503 1.93184 1.52617 1.73820 1.96650 1.93235 1.53525 1.83250 1.85702 1.93187 1.94543 1.42856 1.85828 1.23433 0.89666 0.83776 1.00132 0.91628 0.90548 0.90759 0.93276 0.90492 0.91887 0.94834 0.94009 0.92661 0.86428 0.87613 0.85385 0.85414 0.88113 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.78 37.15 0.33 -1.15 16 2 C 0.05 0.57 2.20 -68.87 -0.15 0.42 16 3 H 0.11 1.18 6.88 -51.93 -0.36 0.82 16 4 C 0.48 8.32 5.19 -10.99 -0.06 8.27 16 5 O -0.54 -11.41 12.11 5.55 0.07 -11.35 16 6 N -0.59 -11.03 2.86 -182.95 -0.52 -11.55 16 7 C 0.08 1.02 9.88 59.85 0.59 1.61 16 8 C 0.24 5.92 5.14 -5.19 -0.03 5.90 16 9 C -0.53 -14.06 9.39 -34.44 -0.32 -14.39 16 10 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 13 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 N -0.48 -6.12 5.67 -230.48 -1.31 -7.43 16 18 C 0.00 -0.07 6.14 -3.94 -0.02 -0.09 16 19 C 0.53 8.59 7.94 -10.65 -0.08 8.51 16 20 O -0.51 -9.62 17.74 5.56 0.10 -9.52 16 21 N -0.62 -8.46 2.83 -175.93 -0.50 -8.96 16 22 C 0.10 1.03 6.01 -4.04 -0.02 1.01 16 23 C 0.43 4.87 3.29 37.16 0.12 5.00 16 24 F -0.18 -2.07 16.68 2.25 0.04 -2.04 16 25 F -0.18 -2.42 17.00 2.25 0.04 -2.39 16 26 F -0.18 -1.95 17.32 2.25 0.04 -1.92 16 27 C 0.24 3.10 5.16 -61.52 -0.32 2.78 16 28 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.76 7.01 -51.93 -0.36 0.39 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 33 H 0.06 0.65 5.22 -51.93 -0.27 0.38 16 34 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 35 H 0.04 1.16 7.50 -51.93 -0.39 0.77 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.11 1.77 5.40 -51.93 -0.28 1.49 16 39 H 0.13 1.34 8.02 -51.93 -0.42 0.92 16 40 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.10 1.52 4.91 -51.93 -0.26 1.26 16 42 H 0.09 0.98 7.60 -51.93 -0.39 0.59 16 LS Contribution 354.86 15.07 5.35 5.35 Total: -1.00 -33.33 354.86 -6.19 -39.52 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.14 Total: -0.24 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: -0.07 Total: 19.45 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -1.59 Total: -52.87 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.17 Total: -20.86 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.11 Total: -6.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.33 -6.19 -39.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488240020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.701 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds