Wall clock time and date at job start Tue Mar 31 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47378 * 2 1 4 4 C 1.50695 * 109.47225 * 239.99813 * 2 1 3 5 5 O 1.21285 * 119.99927 * 268.51784 * 4 2 1 6 6 N 1.34779 * 120.00146 * 88.51720 * 4 2 1 7 7 C 1.46498 * 119.99928 * 354.95516 * 6 4 2 8 8 C 1.46508 * 119.99855 * 174.95853 * 6 4 2 9 9 C 1.50702 * 109.46911 * 89.99835 * 8 6 4 10 10 H 1.07997 * 120.00350 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99696 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99991 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00013 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46993 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46781 * 119.99867 * 13 11 9 16 16 H 1.48499 * 109.47072 * 240.00005 * 13 11 9 17 17 N 1.46904 * 109.47126 * 119.99699 * 2 1 3 18 18 C 1.48238 * 110.99934 * 167.64842 * 17 2 1 19 19 C 1.51307 * 104.76792 * 214.71206 * 18 17 2 20 20 O 1.21277 * 125.75301 * 196.78725 * 19 18 17 21 21 N 1.34856 * 108.49995 * 16.76208 * 19 18 17 22 22 C 1.46501 * 125.20310 * 180.39594 * 21 19 18 23 23 C 1.52998 * 109.47446 * 90.02506 * 22 21 19 24 24 F 1.39902 * 109.47403 * 59.99516 * 23 22 21 25 25 F 1.39905 * 109.47094 * 299.99746 * 23 22 21 26 26 F 1.39894 * 109.47333 * 179.97438 * 23 22 21 27 27 C 1.46796 * 109.58851 * 0.65526 * 21 19 18 28 28 H 1.09003 * 109.47048 * 184.62727 * 1 2 3 29 29 H 1.09001 * 109.47600 * 304.62931 * 1 2 3 30 30 H 1.08998 * 109.47307 * 64.63172 * 1 2 3 31 31 H 1.08994 * 109.46748 * 94.36095 * 7 6 4 32 32 H 1.09004 * 109.47065 * 214.36215 * 7 6 4 33 33 H 1.09002 * 109.47036 * 334.36117 * 7 6 4 34 34 H 1.09000 * 109.46496 * 210.00168 * 8 6 4 35 35 H 1.08998 * 109.47130 * 329.99966 * 8 6 4 36 36 H 0.96995 * 119.99889 * 179.97438 * 12 11 9 37 37 H 1.09000 * 110.38352 * 95.88960 * 18 17 2 38 38 H 1.09002 * 110.37853 * 333.53050 * 18 17 2 39 39 H 1.08999 * 109.47318 * 330.02091 * 22 21 19 40 40 H 1.09010 * 109.46441 * 210.02159 * 22 21 19 41 41 H 1.08998 * 110.11736 * 101.34395 * 27 21 19 42 42 H 1.08997 * 110.12020 * 223.00330 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.2600 -1.9011 -1.1926 6 7 2.2284 -0.0227 -2.3728 7 6 1.8497 1.3903 -2.4514 8 6 2.8204 -0.6882 -3.5360 9 6 1.7270 -1.2888 -4.3815 10 1 0.6945 -1.1854 -4.0822 11 6 2.0449 -1.9701 -5.5373 12 7 3.3022 -2.0955 -5.9020 13 14 0.6896 -2.7139 -6.5858 14 1 -0.6288 -2.4334 -5.9625 15 1 0.7311 -2.1168 -7.9449 16 1 0.8890 -4.1822 -6.6838 17 7 2.0196 -0.6924 1.1995 18 6 3.4713 -0.9739 1.0950 19 6 3.6582 -2.3013 1.7968 20 8 4.7135 -2.7540 2.1872 21 7 2.4537 -2.8960 1.9155 22 6 2.2120 -4.1954 2.5474 23 6 1.9294 -3.9934 4.0374 24 9 0.8000 -3.1823 4.1921 25 9 3.0312 -3.3787 4.6419 26 9 1.6980 -5.2342 4.6407 27 6 1.4227 -2.0448 1.3093 28 1 -0.3633 -1.0243 0.0829 29 1 -0.3634 0.5840 0.8456 30 1 -0.3634 0.4403 -0.9285 31 1 2.7154 2.0117 -2.2227 32 1 1.4957 1.6162 -3.4573 33 1 1.0560 1.5942 -1.7326 34 1 3.3780 0.0392 -4.1259 35 1 3.4941 -1.4764 -3.1998 36 1 3.5258 -2.5752 -6.7149 37 1 4.0460 -0.1952 1.5963 38 1 3.7683 -1.0524 0.0492 39 1 3.0919 -4.8273 2.4269 40 1 1.3535 -4.6743 2.0764 41 1 1.1585 -2.4220 0.3214 42 1 0.5398 -2.0131 1.9475 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488240020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:52 Heat of formation + Delta-G solvation = -206.950194 kcal Electronic energy + Delta-G solvation = -31191.475827 eV Core-core repulsion = 26371.046746 eV Total energy + Delta-G solvation = -4820.429081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.15024 -48.67617 -48.64067 -42.43014 -40.59622 -38.25962 -36.64982 -36.09549 -34.75769 -33.00687 -30.19302 -29.87956 -28.60924 -27.42345 -26.12491 -25.20011 -24.33230 -22.94988 -21.39977 -19.95968 -19.62707 -19.58262 -18.95736 -18.69920 -18.41119 -17.71914 -17.24300 -17.09720 -16.56633 -16.32859 -16.04395 -15.88396 -15.55293 -15.49189 -15.13861 -15.06735 -14.89527 -14.80258 -14.79104 -14.62580 -14.28317 -13.97100 -13.88112 -13.62968 -13.51100 -13.45216 -13.18256 -13.11089 -13.06593 -12.82167 -12.71011 -12.50739 -12.20669 -12.17303 -11.67476 -11.32220 -11.21930 -10.66039 -10.49640 -9.43496 -9.40210 -8.23118 -6.37449 1.09893 1.36445 1.37045 1.38371 1.49690 1.68182 1.79873 2.27069 2.42348 2.53352 2.71607 2.89027 3.07481 3.12483 3.18729 3.59097 3.64651 3.94039 4.10158 4.14363 4.20374 4.27960 4.36878 4.43425 4.49104 4.66594 4.73522 4.83492 4.91964 4.98823 5.03291 5.04203 5.21365 5.32130 5.53745 5.56472 5.69693 5.80490 6.04724 6.67259 6.74566 6.76365 7.25570 7.40163 8.83964 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.015668 B = 0.003282 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.665932 B = 8528.626404 C = 8999.192092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 H 0.144 0.856 4 C 0.470 3.530 5 O -0.584 6.584 6 N -0.602 5.602 7 C 0.070 3.930 8 C 0.260 3.740 9 C -0.535 4.535 10 H 0.057 0.943 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.273 1.273 16 H -0.285 1.285 17 N -0.464 5.464 18 C -0.001 4.001 19 C 0.523 3.477 20 O -0.550 6.550 21 N -0.620 5.620 22 C 0.090 3.910 23 C 0.439 3.561 24 F -0.179 7.179 25 F -0.192 7.192 26 F -0.178 7.178 27 C 0.242 3.758 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.021 0.979 35 H -0.005 1.005 36 H 0.265 0.735 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 4.815 17.276 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 H 0.162 0.838 4 C 0.258 3.742 5 O -0.465 6.465 6 N -0.333 5.333 7 C -0.072 4.072 8 C 0.138 3.862 9 C -0.574 4.574 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.198 1.198 16 H -0.211 1.211 17 N -0.188 5.188 18 C -0.132 4.132 19 C 0.312 3.688 20 O -0.427 6.427 21 N -0.354 5.354 22 C -0.035 4.035 23 C 0.383 3.617 24 F -0.161 7.161 25 F -0.174 7.174 26 F -0.159 7.159 27 C 0.031 3.969 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.039 0.961 35 H 0.013 0.987 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.178 0.822 41 H 0.098 0.902 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.033 4.235 17.866 20.042 hybrid contribution 0.173 -1.214 -1.513 1.948 sum -7.860 3.020 16.353 18.394 Atomic orbital electron populations 1.21900 0.89098 1.03854 1.05066 1.22411 0.99659 1.00041 0.83297 0.83815 1.22261 0.78113 0.87689 0.86162 1.90650 1.53945 1.16901 1.85046 1.48299 1.59927 1.12679 1.12374 1.22069 1.01612 0.79411 1.04093 1.18727 0.92975 0.91755 0.82698 1.21698 0.93641 1.34866 1.07145 0.92511 1.25840 0.97867 0.96429 0.99053 1.70060 1.18749 1.43063 1.25173 0.85402 0.79275 0.77804 0.78535 1.18708 1.19802 1.21126 1.66346 1.02691 1.15772 1.33993 1.23222 0.92307 0.95952 1.01705 1.21321 0.83089 0.87319 0.77092 1.90711 1.29651 1.70647 1.51649 1.48325 1.09402 1.20076 1.57594 1.22666 1.09153 0.85873 0.85757 1.21301 0.74053 0.73934 0.92400 1.93184 1.52400 1.73832 1.96650 1.93208 1.54508 1.83623 1.86038 1.93197 1.94462 1.42488 1.85755 1.23511 0.90205 0.83541 0.99688 0.92368 0.87270 0.90334 0.91041 0.91571 0.87904 0.96138 0.98696 0.92564 0.84356 0.90280 0.85450 0.82165 0.90153 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.78 71.98 0.63 -1.71 16 2 C 0.06 1.28 2.20 44.16 0.10 1.37 16 3 H 0.14 2.34 6.88 -2.39 -0.02 2.32 16 4 C 0.47 16.20 5.19 87.66 0.45 16.66 16 5 O -0.58 -25.36 12.11 -3.04 -0.04 -25.39 16 6 N -0.60 -22.31 2.86 -851.11 -2.43 -24.74 16 7 C 0.07 1.73 9.88 127.77 1.26 2.99 16 8 C 0.26 13.12 5.14 85.63 0.44 13.56 16 9 C -0.53 -29.08 9.39 25.60 0.24 -28.84 16 10 H 0.06 3.03 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.38 5.46 84.65 0.46 0.85 16 12 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 13 Si 0.97 43.27 29.54 68.60 2.03 45.29 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 17 N -0.46 -10.77 5.67 -883.12 -5.01 -15.78 16 18 C 0.00 -0.04 6.14 85.49 0.53 0.49 16 19 C 0.52 16.90 7.94 87.84 0.70 17.59 16 20 O -0.55 -21.16 17.74 -3.02 -0.05 -21.21 16 21 N -0.62 -16.37 2.83 -828.87 -2.35 -18.72 16 22 C 0.09 1.83 6.01 86.38 0.52 2.35 16 23 C 0.44 9.27 3.29 71.98 0.24 9.50 16 24 F -0.18 -3.69 16.68 44.97 0.75 -2.94 16 25 F -0.19 -5.18 17.00 44.97 0.76 -4.42 16 26 F -0.18 -3.53 17.32 44.97 0.78 -2.75 16 27 C 0.24 5.77 5.16 170.18 0.88 6.65 16 28 H 0.06 1.08 6.53 -2.39 -0.02 1.06 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.28 7.01 -2.39 -0.02 1.26 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.79 8.10 -2.38 -0.02 1.77 16 33 H 0.10 1.70 5.22 -2.39 -0.01 1.69 16 34 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 35 H -0.01 -0.30 7.50 -2.39 -0.02 -0.32 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 37 H 0.14 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.08 2.72 5.40 -2.39 -0.01 2.71 16 39 H 0.13 2.63 8.02 -2.39 -0.02 2.61 16 40 H 0.16 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.08 2.35 4.91 -2.39 -0.01 2.34 16 42 H 0.12 2.20 7.60 -2.39 -0.02 2.18 16 Total: -1.00 -76.18 354.86 2.24 -73.94 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.07 Total: 9.96 kcal Atomic # 6 Polarization: 35.01 SS G_CDS: 6.45 Total: 41.46 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -9.50 Total: -113.94 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -0.09 Total: -46.61 kcal Atomic # 9 Polarization: -12.40 SS G_CDS: 2.29 Total: -10.11 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -76.18 2.24 -73.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488240020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.010 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds