Wall clock time and date at job start Tue Mar 31 2020 21:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.50697 * 109.47374 * 240.00332 * 2 1 3 5 5 H 1.08005 * 119.99589 * 240.00140 * 4 2 1 6 6 C 1.37875 * 120.00416 * 59.99503 * 4 2 1 7 7 N 1.31517 * 119.99384 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46994 * 90.00130 * 8 6 4 10 10 H 1.48495 * 109.47437 * 210.00058 * 8 6 4 11 11 H 1.48500 * 109.47260 * 330.00216 * 8 6 4 12 12 O 1.45204 * 109.47182 * 119.99650 * 2 1 3 13 13 C 1.34720 * 116.99909 * 270.00503 * 12 2 1 14 14 O 1.21468 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.47775 * 119.99464 * 179.97438 * 13 12 2 16 16 C 1.39501 * 120.01279 * 179.72237 * 15 13 12 17 17 N 1.32017 * 119.96289 * 179.72974 * 16 15 13 18 18 C 1.32722 * 120.00032 * 0.55141 * 17 16 15 19 19 N 1.38881 * 119.98114 * 179.73058 * 18 17 16 20 20 C 1.34772 * 119.99831 * 354.88807 * 19 18 17 21 21 O 1.21493 * 120.00220 * 5.08929 * 20 19 18 22 22 O 1.34630 * 119.99475 * 185.09239 * 20 19 18 23 23 C 1.45208 * 116.99562 * 179.97438 * 22 20 19 24 24 C 1.52994 * 109.47248 * 60.00086 * 23 22 20 25 25 C 1.53004 * 109.46998 * 180.02562 * 23 22 20 26 26 C 1.52993 * 109.47414 * 299.99816 * 23 22 20 27 27 C 1.39743 * 120.03491 * 359.70136 * 18 17 16 28 28 N 1.31501 * 120.03410 * 0.02858 * 27 18 17 29 29 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47289 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.47451 * 300.00123 * 1 2 3 32 32 H 0.97003 * 119.99259 * 179.97438 * 7 6 4 33 33 H 1.08004 * 120.01760 * 359.97438 * 16 15 13 34 34 H 0.96999 * 119.99777 * 174.88097 * 19 18 17 35 35 H 1.09002 * 109.47366 * 59.99624 * 24 23 22 36 36 H 1.08994 * 109.47424 * 179.97438 * 24 23 22 37 37 H 1.09005 * 109.47102 * 299.99969 * 24 23 22 38 38 H 1.08998 * 109.47058 * 59.99616 * 25 23 22 39 39 H 1.08994 * 109.47093 * 180.02562 * 25 23 22 40 40 H 1.09002 * 109.46739 * 299.99839 * 25 23 22 41 41 H 1.09004 * 109.47079 * 59.99658 * 26 23 22 42 42 H 1.08996 * 109.47851 * 180.02562 * 26 23 22 43 43 H 1.09006 * 109.47534 * 300.00568 * 26 23 22 44 44 H 1.08005 * 119.98367 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 1.3428 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0669 2.2852 14 8 1.9976 1.2610 2.2542 15 6 2.7091 -0.5619 3.5289 16 6 2.9258 0.2166 4.6660 17 7 3.3597 -0.3470 5.7781 18 6 3.6000 -1.6519 5.8108 19 7 4.0618 -2.2435 6.9794 20 6 4.3639 -1.4794 8.0477 21 8 4.1456 -0.2845 8.0212 22 8 4.9078 -2.0402 9.1441 23 6 5.2078 -1.1565 10.2566 24 6 3.9198 -0.4834 10.7350 25 6 5.8159 -1.9677 11.4026 26 6 6.2044 -0.0874 9.8044 27 6 3.3880 -2.4309 4.6702 28 7 2.9508 -1.8718 3.5632 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7095 1.1618 -3.4844 33 1 2.7349 1.2793 4.6376 34 1 4.1668 -3.2066 7.0267 35 1 3.2098 -1.2451 11.0572 36 1 4.1449 0.1795 11.5703 37 1 3.4870 0.0946 9.9184 38 1 6.7335 -2.4470 11.0615 39 1 6.0407 -1.3045 12.2378 40 1 5.1061 -2.7296 11.7249 41 1 5.7716 0.4905 8.9878 42 1 6.4300 0.5756 10.6396 43 1 7.1220 -0.5670 9.4636 44 1 3.5834 -3.4928 4.6978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496780425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:57 Heat of formation + Delta-G solvation = -100.115342 kcal Electronic energy + Delta-G solvation = -28517.868739 eV Core-core repulsion = 24243.929105 eV Total energy + Delta-G solvation = -4273.939634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81317 -40.89669 -39.31130 -37.89759 -35.84170 -35.55060 -34.57968 -34.04091 -33.21113 -30.92516 -29.47272 -27.83441 -27.76731 -25.97131 -25.30889 -24.93567 -23.04383 -21.91373 -20.65914 -20.06473 -19.07559 -18.30141 -17.71552 -17.19211 -16.78064 -16.57145 -16.32564 -15.84577 -15.54279 -14.99020 -14.94440 -14.87732 -14.56785 -14.37885 -14.03258 -13.83821 -12.93162 -12.92273 -12.80107 -12.34278 -12.32143 -12.30918 -12.10982 -11.88937 -11.88095 -11.57296 -11.55121 -11.21840 -11.06538 -10.98033 -10.81766 -10.74873 -10.48029 -10.37847 -10.28409 -10.09456 -9.55231 -9.17580 -8.89801 -8.83183 -8.47419 -6.16576 -4.22880 0.22809 0.93977 1.42940 2.34511 2.91263 3.17485 3.27044 3.31473 3.34242 3.42201 3.78190 3.98626 4.10691 4.17354 4.27482 4.32843 4.36344 4.46861 4.81047 5.05365 5.11934 5.13279 5.14725 5.16960 5.28251 5.36361 5.44807 5.45299 5.57291 5.65576 5.90722 5.94788 5.97957 6.12670 6.56061 6.63025 6.89710 6.90433 7.03738 7.12334 7.50084 7.59247 7.71935 7.90353 7.91291 8.13956 8.55949 8.87920 9.42018 10.91000 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.001964 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.896865 B =14250.338435 C =14603.616512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.212 3.788 3 H 0.049 0.951 4 C -0.518 4.518 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.329 6.329 13 C 0.517 3.483 14 O -0.507 6.507 15 C 0.020 3.980 16 C 0.150 3.850 17 N -0.437 5.437 18 C 0.341 3.659 19 N -0.629 5.629 20 C 0.641 3.359 21 O -0.497 6.497 22 O -0.362 6.362 23 C 0.137 3.863 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.186 4.186 27 C 0.029 3.971 28 N -0.353 5.353 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.016 0.984 32 H 0.266 0.734 33 H 0.190 0.810 34 H 0.428 0.572 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.570 -7.683 27.294 29.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.556 4.556 5 H 0.089 0.911 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.243 6.243 13 C 0.358 3.642 14 O -0.397 6.397 15 C -0.119 4.119 16 C -0.010 4.010 17 N -0.157 5.157 18 C 0.105 3.895 19 N -0.282 5.282 20 C 0.394 3.606 21 O -0.378 6.378 22 O -0.277 6.277 23 C 0.100 3.900 24 C -0.243 4.243 25 C -0.198 4.198 26 C -0.243 4.243 27 C -0.140 4.140 28 N -0.069 5.069 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.207 0.793 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.356 -6.546 27.215 29.212 hybrid contribution 0.281 -0.804 -0.716 1.113 sum 8.637 -7.350 26.499 28.824 Atomic orbital electron populations 1.22173 0.97346 1.00274 1.01486 1.20769 0.91562 0.94024 0.77632 0.93333 1.21017 1.32430 1.13493 0.88698 0.91141 1.24887 0.94979 0.95117 0.99056 1.69902 1.36155 1.22526 1.24171 0.86250 0.79311 0.79097 0.81336 1.20369 1.21013 1.19614 1.86669 1.74689 1.42497 1.20470 1.20222 0.75164 0.84780 0.84017 1.90817 1.48938 1.15527 1.84379 1.21433 1.04485 0.90867 0.95153 1.23821 0.89419 1.02144 0.85622 1.68626 1.12427 1.08406 1.26196 1.19480 0.92806 0.91224 0.85955 1.41854 1.65627 1.11339 1.09333 1.18115 0.77684 0.84372 0.80478 1.91062 1.53267 1.12715 1.80771 1.86298 1.74967 1.42794 1.23661 1.22172 0.95811 0.89186 0.82784 1.22532 0.96636 1.01661 1.03431 1.21871 1.01481 1.00612 0.95792 1.22537 0.98774 0.99011 1.03968 1.23352 1.01990 1.01659 0.87032 1.68530 1.03469 1.10508 1.24367 0.94298 0.88108 0.96451 0.92406 0.79297 0.73349 0.92056 0.90852 0.89221 0.91352 0.89919 0.91373 0.89218 0.90848 0.92047 0.80308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.21 5.76 2.56 -27.89 -0.07 5.69 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 4 C -0.52 -14.69 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 O -0.33 -8.10 9.69 -40.55 -0.39 -8.49 16 13 C 0.52 11.20 7.92 34.63 0.27 11.48 16 14 O -0.51 -11.75 15.59 -19.24 -0.30 -12.05 16 15 C 0.02 0.34 6.74 -82.89 -0.56 -0.21 16 16 C 0.15 2.27 10.76 -17.00 -0.18 2.09 16 17 N -0.44 -6.28 8.03 -11.87 -0.10 -6.37 16 18 C 0.34 3.96 7.43 -154.63 -1.15 2.81 16 19 N -0.63 -5.45 5.38 -15.74 -0.08 -5.53 16 20 C 0.64 6.82 8.01 54.05 0.43 7.25 16 21 O -0.50 -6.69 10.15 -19.27 -0.20 -6.88 16 22 O -0.36 -3.18 9.94 -40.30 -0.40 -3.58 16 23 C 0.14 1.02 1.13 -90.62 -0.10 0.92 16 24 C -0.19 -1.41 8.37 37.15 0.31 -1.10 16 25 C -0.14 -0.67 8.85 37.16 0.33 -0.34 16 26 C -0.19 -1.44 8.37 37.15 0.31 -1.13 16 27 C 0.03 0.32 11.08 -17.13 -0.19 0.13 16 28 N -0.35 -5.61 10.26 -9.47 -0.10 -5.70 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.19 2.64 7.64 -52.48 -0.40 2.24 16 34 H 0.43 1.93 8.81 -40.82 -0.36 1.57 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -34.15 374.88 -6.79 -40.94 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.83 Total: -0.08 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.65 Total: 10.58 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.35 Total: -42.28 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -1.29 Total: -31.01 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.15 -6.79 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496780425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.178 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds