Wall clock time and date at job start Tue Mar 31 2020 21:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.50697 * 109.47374 * 240.00332 * 2 1 3 5 5 H 1.08005 * 119.99589 * 240.00140 * 4 2 1 6 6 C 1.37875 * 120.00416 * 59.99503 * 4 2 1 7 7 N 1.31517 * 119.99384 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00294 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46994 * 90.00130 * 8 6 4 10 10 H 1.48495 * 109.47437 * 210.00058 * 8 6 4 11 11 H 1.48500 * 109.47260 * 330.00216 * 8 6 4 12 12 O 1.45204 * 109.47182 * 119.99650 * 2 1 3 13 13 C 1.34720 * 116.99909 * 270.00503 * 12 2 1 14 14 O 1.21468 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.47775 * 119.99464 * 179.97438 * 13 12 2 16 16 C 1.39501 * 120.01279 * 179.72237 * 15 13 12 17 17 N 1.32017 * 119.96289 * 179.72974 * 16 15 13 18 18 C 1.32722 * 120.00032 * 0.55141 * 17 16 15 19 19 N 1.38881 * 119.98114 * 179.73058 * 18 17 16 20 20 C 1.34772 * 119.99831 * 354.88807 * 19 18 17 21 21 O 1.21493 * 120.00220 * 5.08929 * 20 19 18 22 22 O 1.34630 * 119.99475 * 185.09239 * 20 19 18 23 23 C 1.45208 * 116.99562 * 179.97438 * 22 20 19 24 24 C 1.52994 * 109.47248 * 60.00086 * 23 22 20 25 25 C 1.53004 * 109.46998 * 180.02562 * 23 22 20 26 26 C 1.52993 * 109.47414 * 299.99816 * 23 22 20 27 27 C 1.39743 * 120.03491 * 359.70136 * 18 17 16 28 28 N 1.31501 * 120.03410 * 0.02858 * 27 18 17 29 29 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47289 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.47451 * 300.00123 * 1 2 3 32 32 H 0.97003 * 119.99259 * 179.97438 * 7 6 4 33 33 H 1.08004 * 120.01760 * 359.97438 * 16 15 13 34 34 H 0.96999 * 119.99777 * 174.88097 * 19 18 17 35 35 H 1.09002 * 109.47366 * 59.99624 * 24 23 22 36 36 H 1.08994 * 109.47424 * 179.97438 * 24 23 22 37 37 H 1.09005 * 109.47102 * 299.99969 * 24 23 22 38 38 H 1.08998 * 109.47058 * 59.99616 * 25 23 22 39 39 H 1.08994 * 109.47093 * 180.02562 * 25 23 22 40 40 H 1.09002 * 109.46739 * 299.99839 * 25 23 22 41 41 H 1.09004 * 109.47079 * 59.99658 * 26 23 22 42 42 H 1.08996 * 109.47851 * 180.02562 * 26 23 22 43 43 H 1.09006 * 109.47534 * 300.00568 * 26 23 22 44 44 H 1.08005 * 119.98367 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1202 -4.0079 9 1 1.3428 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 8 2.0140 -0.6844 1.1856 13 6 2.2178 0.0669 2.2852 14 8 1.9976 1.2610 2.2542 15 6 2.7091 -0.5619 3.5289 16 6 2.9258 0.2166 4.6660 17 7 3.3597 -0.3470 5.7781 18 6 3.6000 -1.6519 5.8108 19 7 4.0618 -2.2435 6.9794 20 6 4.3639 -1.4794 8.0477 21 8 4.1456 -0.2845 8.0212 22 8 4.9078 -2.0402 9.1441 23 6 5.2078 -1.1565 10.2566 24 6 3.9198 -0.4834 10.7350 25 6 5.8159 -1.9677 11.4026 26 6 6.2044 -0.0874 9.8044 27 6 3.3880 -2.4309 4.6702 28 7 2.9508 -1.8718 3.5632 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7095 1.1618 -3.4844 33 1 2.7349 1.2793 4.6376 34 1 4.1668 -3.2066 7.0267 35 1 3.2098 -1.2451 11.0572 36 1 4.1449 0.1795 11.5703 37 1 3.4870 0.0946 9.9184 38 1 6.7335 -2.4470 11.0615 39 1 6.0407 -1.3045 12.2378 40 1 5.1061 -2.7296 11.7249 41 1 5.7716 0.4905 8.9878 42 1 6.4300 0.5756 10.6396 43 1 7.1220 -0.5670 9.4636 44 1 3.5834 -3.4928 4.6978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496780425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:56 Heat of formation + Delta-G solvation = -123.148006 kcal Electronic energy + Delta-G solvation = -28518.867510 eV Core-core repulsion = 24243.929105 eV Total energy + Delta-G solvation = -4274.938405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.83246 -41.85406 -40.97584 -38.73803 -37.66041 -36.54827 -35.56282 -35.23573 -34.86918 -32.22246 -31.38625 -28.36992 -28.28528 -27.46952 -27.11120 -26.09660 -24.20869 -23.33270 -21.89920 -21.40407 -19.93632 -19.40117 -19.18542 -18.62770 -17.98544 -17.64540 -17.60710 -17.24054 -17.02040 -16.56335 -15.99743 -15.93135 -15.69107 -15.32470 -15.27675 -14.70333 -14.50506 -14.25264 -13.90187 -13.46230 -13.36262 -13.20673 -13.01512 -12.94864 -12.90994 -12.85641 -12.83721 -12.78730 -12.46403 -12.39503 -12.33405 -12.16316 -11.95708 -11.85833 -11.59462 -11.42733 -11.28727 -11.00638 -10.59195 -10.29613 -9.86443 -8.27588 -6.43983 -0.95089 -0.13102 0.62757 1.20543 1.42742 1.45601 1.55779 1.67403 1.73897 2.38864 2.46171 2.56098 2.92291 2.96112 3.03129 3.30683 3.68111 3.72509 3.78303 3.89373 3.93322 4.34699 4.42465 4.51221 4.57189 4.62408 4.74690 4.77753 4.79062 4.81888 4.86038 4.89854 5.05457 5.11965 5.19974 5.28631 5.29968 5.40273 5.47478 5.60599 5.70291 5.84482 6.01726 6.09728 6.43895 6.59376 6.85966 7.11727 7.26542 8.80281 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.033171 B = 0.001964 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.896865 B =14250.338435 C =14603.616512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.013 0.987 4 C -0.546 4.546 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.985 3.015 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.266 1.266 12 O -0.340 6.340 13 C 0.514 3.486 14 O -0.534 6.534 15 C -0.009 4.009 16 C 0.160 3.840 17 N -0.459 5.459 18 C 0.359 3.641 19 N -0.608 5.608 20 C 0.638 3.362 21 O -0.525 6.525 22 O -0.354 6.354 23 C 0.128 3.872 24 C -0.182 4.182 25 C -0.135 4.135 26 C -0.183 4.183 27 C 0.056 3.944 28 N -0.381 5.381 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.025 0.975 32 H 0.271 0.729 33 H 0.190 0.810 34 H 0.450 0.550 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.064 0.936 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.909 -10.414 29.098 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.584 4.584 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.808 3.192 9 H -0.191 1.191 10 H -0.202 1.202 11 H -0.191 1.191 12 O -0.255 6.255 13 C 0.357 3.643 14 O -0.425 6.425 15 C -0.145 4.145 16 C 0.001 3.999 17 N -0.179 5.179 18 C 0.120 3.880 19 N -0.263 5.263 20 C 0.391 3.609 21 O -0.409 6.409 22 O -0.269 6.269 23 C 0.092 3.908 24 C -0.239 4.239 25 C -0.192 4.192 26 C -0.240 4.240 27 C -0.115 4.115 28 N -0.096 5.096 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.207 0.793 34 H 0.294 0.706 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.109 0.891 43 H 0.083 0.917 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.693 -9.285 29.048 31.999 hybrid contribution -0.041 -0.011 -0.989 0.990 sum 9.652 -9.297 28.059 31.095 Atomic orbital electron populations 1.21993 0.96505 1.00466 1.01014 1.20499 0.92243 0.92317 0.78858 0.96924 1.21257 1.33431 1.13896 0.89798 0.91530 1.25834 0.94750 0.95702 1.02090 1.70017 1.36565 1.23547 1.25251 0.85155 0.78980 0.78097 0.77004 1.19148 1.20218 1.19058 1.86645 1.75358 1.42695 1.20769 1.20944 0.74260 0.84655 0.84402 1.90780 1.50178 1.16644 1.84869 1.20798 1.08063 0.92078 0.93555 1.23695 0.88964 1.02060 0.85144 1.68694 1.13493 1.10136 1.25598 1.19763 0.90717 0.90487 0.87009 1.41765 1.64192 1.12405 1.07921 1.18326 0.77398 0.84119 0.81059 1.91078 1.54215 1.14239 1.81343 1.86331 1.74370 1.42849 1.23334 1.22496 0.95722 0.89616 0.82996 1.22490 0.96779 1.01776 1.02898 1.21894 1.01538 1.00780 0.94976 1.22498 0.98725 0.99170 1.03615 1.24139 0.98888 1.03529 0.84973 1.68435 1.04729 1.09812 1.26672 0.93606 0.89758 0.95622 0.91942 0.79307 0.70635 0.91515 0.89096 0.92238 0.90868 0.88053 0.90761 0.92279 0.89071 0.91676 0.74882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.84 16 2 C 0.21 12.12 2.56 29.85 0.08 12.20 16 3 H 0.01 0.81 7.16 -2.39 -0.02 0.79 16 4 C -0.55 -31.74 8.90 25.60 0.23 -31.51 16 5 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -53.05 11.32 21.45 0.24 -52.81 16 8 Si 0.98 43.45 29.54 68.60 2.03 45.47 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 10 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 12 O -0.34 -17.44 9.69 -56.30 -0.55 -17.98 16 13 C 0.51 23.38 7.92 70.34 0.56 23.94 16 14 O -0.53 -26.29 15.59 19.94 0.31 -25.98 16 15 C -0.01 -0.31 6.74 41.76 0.28 -0.03 16 16 C 0.16 4.96 10.76 84.97 0.91 5.88 16 17 N -0.46 -12.95 8.03 -191.45 -1.54 -14.49 16 18 C 0.36 7.52 7.43 133.16 0.99 8.50 16 19 N -0.61 -8.74 5.38 -434.13 -2.34 -11.08 16 20 C 0.64 12.45 8.01 129.79 1.04 13.49 16 21 O -0.53 -13.94 10.15 19.86 0.20 -13.74 16 22 O -0.35 -5.42 9.94 -55.39 -0.55 -5.97 16 23 C 0.13 1.64 1.13 -10.80 -0.01 1.63 16 24 C -0.18 -2.51 8.37 71.98 0.60 -1.91 16 25 C -0.13 -0.87 8.85 71.98 0.64 -0.23 16 26 C -0.18 -2.60 8.37 71.98 0.60 -1.99 16 27 C 0.06 1.09 11.08 85.11 0.94 2.03 16 28 N -0.38 -11.74 10.26 -183.87 -1.89 -13.63 16 29 H 0.04 2.28 8.14 -2.39 -0.02 2.27 16 30 H 0.08 4.72 6.07 -2.39 -0.01 4.71 16 31 H 0.02 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.19 5.62 7.64 -2.91 -0.02 5.60 16 34 H 0.45 2.18 8.81 -92.71 -0.82 1.36 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 1.22 5.88 -2.38 -0.01 1.21 16 38 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.06 1.24 5.88 -2.38 -0.01 1.23 16 42 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -77.89 374.88 4.14 -73.75 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.23 Total: 9.94 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 7.98 Total: 26.50 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -5.52 Total: -92.00 kcal Atomic # 8 Polarization: -63.08 SS G_CDS: -0.58 Total: -63.67 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -77.89 4.14 -73.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496780425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.394 kcal (2) G-P(sol) polarization free energy of solvation -77.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds