Wall clock time and date at job start Tue Mar 31 2020 21:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46726 * 2 1 4 4 C 1.50702 * 109.46763 * 120.00220 * 2 1 3 5 5 H 1.07995 * 119.99957 * 120.00464 * 4 2 1 6 6 C 1.37881 * 120.00081 * 299.99603 * 4 2 1 7 7 N 1.31515 * 119.99640 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47129 * 60.00224 * 8 6 4 10 10 H 1.48497 * 109.47237 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46897 * 300.00576 * 8 6 4 12 12 O 1.45192 * 109.47225 * 240.00434 * 2 1 3 13 13 C 1.34721 * 117.00314 * 89.99901 * 12 2 1 14 14 O 1.21467 * 119.99951 * 359.97438 * 13 12 2 15 15 C 1.47762 * 119.99994 * 179.97438 * 13 12 2 16 16 C 1.39503 * 120.01988 * 179.97438 * 15 13 12 17 17 N 1.32005 * 119.97040 * 180.02562 * 16 15 13 18 18 C 1.32723 * 120.00423 * 0.02562 * 17 16 15 19 19 N 1.38879 * 119.98449 * 179.97438 * 18 17 16 20 20 C 1.34775 * 120.00041 * 5.41835 * 19 18 17 21 21 O 1.21493 * 119.99669 * 355.16051 * 20 19 18 22 22 O 1.34630 * 119.99881 * 175.16520 * 20 19 18 23 23 C 1.45206 * 116.99670 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47289 * 59.99907 * 23 22 20 25 25 C 1.52997 * 109.46867 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.46760 * 299.99916 * 23 22 20 27 27 C 1.39745 * 120.03319 * 0.25434 * 18 17 16 28 28 N 1.31511 * 120.03050 * 359.47094 * 27 18 17 29 29 H 1.09004 * 109.47100 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47410 * 299.99740 * 1 2 3 32 32 H 0.97001 * 119.99634 * 179.97438 * 7 6 4 33 33 H 1.08007 * 120.01094 * 0.05138 * 16 15 13 34 34 H 0.97007 * 120.00054 * 185.68188 * 19 18 17 35 35 H 1.09002 * 109.47036 * 59.99608 * 24 23 22 36 36 H 1.08995 * 109.46891 * 179.97438 * 24 23 22 37 37 H 1.09005 * 109.46779 * 300.00113 * 24 23 22 38 38 H 1.09003 * 109.47285 * 59.99861 * 25 23 22 39 39 H 1.09005 * 109.47096 * 179.97438 * 25 23 22 40 40 H 1.08999 * 109.47120 * 299.99579 * 25 23 22 41 41 H 1.08993 * 109.47593 * 60.00107 * 26 23 22 42 42 H 1.09005 * 109.46933 * 180.02562 * 26 23 22 43 43 H 1.09003 * 109.47202 * 300.00023 * 26 23 22 44 44 H 1.08002 * 119.98388 * 179.71812 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4201 5.2205 11 1 1.8279 -2.5199 4.0080 12 8 2.0140 -0.6843 -1.1855 13 6 2.2179 0.0669 -2.2851 14 8 1.9969 1.2609 -2.2544 15 6 2.7104 -0.5616 -3.5284 16 6 2.9211 0.2158 -4.6674 17 7 3.3606 -0.3468 -5.7778 18 6 3.6012 -1.6516 -5.8104 19 7 4.0631 -2.2431 -6.9790 20 6 4.3708 -1.4785 -8.0453 21 8 4.1616 -0.2821 -8.0155 22 8 4.9098 -2.0405 -9.1436 23 6 5.2152 -1.1564 -10.2542 24 6 6.2196 -0.0953 -9.8001 25 6 5.8155 -1.9693 -11.4029 26 6 3.9316 -0.4731 -10.7299 27 6 3.3846 -2.4315 -4.6713 28 7 2.9520 -1.8715 -3.5628 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7082 1.1608 3.4844 33 1 2.7252 1.2776 -4.6405 34 1 4.1605 -3.2070 -7.0290 35 1 7.1341 -0.5822 -9.4612 36 1 6.4492 0.5680 -10.6340 37 1 5.7915 0.4837 -8.9818 38 1 5.0996 -2.7249 -11.7263 39 1 6.0444 -1.3056 -12.2369 40 1 6.7299 -2.4564 -11.0643 41 1 3.5034 0.1059 -9.9117 42 1 4.1607 0.1903 -11.5639 43 1 3.2160 -1.2290 -11.0533 44 1 3.5764 -3.4940 -4.7001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496780426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:05 Heat of formation + Delta-G solvation = -100.063080 kcal Electronic energy + Delta-G solvation = -28517.592557 eV Core-core repulsion = 24243.655189 eV Total energy + Delta-G solvation = -4273.937368 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81276 -40.89648 -39.31155 -37.89745 -35.84149 -35.54997 -34.57932 -34.04092 -33.20926 -30.92496 -29.47099 -27.83415 -27.76749 -25.97139 -25.30657 -24.93517 -23.04376 -21.91322 -20.65881 -20.06385 -19.07524 -18.30136 -17.71561 -17.19249 -16.77978 -16.57184 -16.32303 -15.84355 -15.54380 -14.99021 -14.94321 -14.87717 -14.56898 -14.37835 -14.03403 -13.83869 -12.93128 -12.92026 -12.80071 -12.34266 -12.32103 -12.30849 -12.10909 -11.88902 -11.87718 -11.57006 -11.55322 -11.22048 -11.04462 -10.97998 -10.83271 -10.74864 -10.48041 -10.38480 -10.28339 -10.09356 -9.55152 -9.17609 -8.90371 -8.83138 -8.46951 -6.16232 -4.22688 0.22781 0.93990 1.42934 2.34524 2.91209 3.17506 3.28994 3.31468 3.33138 3.41505 3.78171 3.98639 4.10709 4.17347 4.27518 4.32819 4.36456 4.46834 4.81067 5.05335 5.11963 5.13278 5.14744 5.17122 5.28235 5.36349 5.44813 5.45315 5.57267 5.65633 5.90737 5.94799 5.97957 6.12686 6.56088 6.63138 6.89842 6.90550 7.03759 7.12420 7.50087 7.59218 7.72104 7.90392 7.91303 8.14113 8.56045 8.87792 9.42129 10.91265 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.001964 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.541584 B =14250.126384 C =14602.592390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.213 3.787 3 H 0.049 0.951 4 C -0.519 4.519 5 H 0.070 0.930 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.329 6.329 13 C 0.517 3.483 14 O -0.507 6.507 15 C 0.020 3.980 16 C 0.150 3.850 17 N -0.437 5.437 18 C 0.341 3.659 19 N -0.629 5.629 20 C 0.641 3.359 21 O -0.497 6.497 22 O -0.362 6.362 23 C 0.137 3.863 24 C -0.186 4.186 25 C -0.140 4.140 26 C -0.186 4.186 27 C 0.029 3.971 28 N -0.353 5.353 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.101 0.899 32 H 0.267 0.733 33 H 0.190 0.810 34 H 0.428 0.572 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.532 -7.681 -27.293 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.067 0.933 4 C -0.557 4.557 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 O -0.243 6.243 13 C 0.358 3.642 14 O -0.397 6.397 15 C -0.119 4.119 16 C -0.010 4.010 17 N -0.156 5.156 18 C 0.105 3.895 19 N -0.282 5.282 20 C 0.394 3.606 21 O -0.378 6.378 22 O -0.277 6.277 23 C 0.100 3.900 24 C -0.243 4.243 25 C -0.198 4.198 26 C -0.243 4.243 27 C -0.140 4.140 28 N -0.069 5.069 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.207 0.793 34 H 0.267 0.733 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 8.324 -6.542 -27.208 29.195 hybrid contribution 0.296 -0.808 0.711 1.116 sum 8.620 -7.349 -26.497 28.817 Atomic orbital electron populations 1.22174 0.97346 1.00273 1.01483 1.20763 0.91563 0.94009 0.77617 0.93346 1.20979 1.32510 1.13525 0.88710 0.91193 1.24886 0.94955 0.95121 0.99041 1.69889 1.36029 1.22556 1.24283 0.86306 0.79204 0.79533 0.80927 1.19996 1.21075 1.19926 1.86667 1.74690 1.42500 1.20470 1.20219 0.75172 0.84777 0.84016 1.90816 1.48948 1.15535 1.84361 1.21432 1.04479 0.90877 0.95148 1.23818 0.89406 1.02130 0.85653 1.68621 1.12351 1.08434 1.26245 1.19480 0.92792 0.91232 0.85960 1.41856 1.65615 1.11269 1.09417 1.18116 0.77668 0.84392 0.80472 1.91062 1.53375 1.12614 1.80770 1.86298 1.75102 1.42690 1.23629 1.22174 0.95777 0.89178 0.82826 1.22536 0.98702 0.99079 1.03968 1.21871 1.01528 1.00599 0.95758 1.22534 0.96670 1.01613 1.03447 1.23355 1.02021 1.01649 0.87008 1.68536 1.03492 1.10491 1.24356 0.96455 0.94297 0.88106 0.92346 0.79297 0.73346 0.92046 0.90849 0.89213 0.91369 0.89919 0.91355 0.89225 0.90853 0.92056 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 9.33 37.16 0.35 -3.61 16 2 C 0.21 5.77 2.56 -27.88 -0.07 5.70 16 3 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.71 8.90 -34.44 -0.31 -15.02 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.67 16 8 Si 0.91 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 O -0.33 -8.10 9.69 -40.55 -0.39 -8.50 16 13 C 0.52 11.20 7.92 34.62 0.27 11.48 16 14 O -0.51 -11.75 15.59 -19.24 -0.30 -12.05 16 15 C 0.02 0.34 6.74 -82.89 -0.56 -0.21 16 16 C 0.15 2.27 10.76 -17.01 -0.18 2.09 16 17 N -0.44 -6.28 8.03 -11.87 -0.10 -6.37 16 18 C 0.34 3.96 7.43 -154.64 -1.15 2.81 16 19 N -0.63 -5.45 5.38 -15.74 -0.08 -5.53 16 20 C 0.64 6.82 8.01 54.05 0.43 7.25 16 21 O -0.50 -6.69 10.15 -19.27 -0.20 -6.89 16 22 O -0.36 -3.18 9.94 -40.30 -0.40 -3.58 16 23 C 0.14 1.02 1.13 -90.62 -0.10 0.92 16 24 C -0.19 -1.44 8.37 37.16 0.31 -1.13 16 25 C -0.14 -0.67 8.85 37.16 0.33 -0.34 16 26 C -0.19 -1.41 8.37 37.16 0.31 -1.10 16 27 C 0.03 0.32 11.08 -17.13 -0.19 0.13 16 28 N -0.35 -5.61 10.26 -9.47 -0.10 -5.71 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.19 2.64 7.64 -52.48 -0.40 2.24 16 34 H 0.43 1.93 8.81 -40.82 -0.36 1.57 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -34.12 374.88 -6.79 -40.91 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.83 Total: -0.05 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.65 Total: 10.58 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.35 Total: -42.28 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -1.29 Total: -31.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.12 -6.79 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496780426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.150 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds