Wall clock time and date at job start Tue Mar 31 2020 21:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46726 * 2 1 4 4 C 1.50702 * 109.46763 * 120.00220 * 2 1 3 5 5 H 1.07995 * 119.99957 * 120.00464 * 4 2 1 6 6 C 1.37881 * 120.00081 * 299.99603 * 4 2 1 7 7 N 1.31515 * 119.99640 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00063 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47129 * 60.00224 * 8 6 4 10 10 H 1.48497 * 109.47237 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46897 * 300.00576 * 8 6 4 12 12 O 1.45192 * 109.47225 * 240.00434 * 2 1 3 13 13 C 1.34721 * 117.00314 * 89.99901 * 12 2 1 14 14 O 1.21467 * 119.99951 * 359.97438 * 13 12 2 15 15 C 1.47762 * 119.99994 * 179.97438 * 13 12 2 16 16 C 1.39503 * 120.01988 * 179.97438 * 15 13 12 17 17 N 1.32005 * 119.97040 * 180.02562 * 16 15 13 18 18 C 1.32723 * 120.00423 * 0.02562 * 17 16 15 19 19 N 1.38879 * 119.98449 * 179.97438 * 18 17 16 20 20 C 1.34775 * 120.00041 * 5.41835 * 19 18 17 21 21 O 1.21493 * 119.99669 * 355.16051 * 20 19 18 22 22 O 1.34630 * 119.99881 * 175.16520 * 20 19 18 23 23 C 1.45206 * 116.99670 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47289 * 59.99907 * 23 22 20 25 25 C 1.52997 * 109.46867 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.46760 * 299.99916 * 23 22 20 27 27 C 1.39745 * 120.03319 * 0.25434 * 18 17 16 28 28 N 1.31511 * 120.03050 * 359.47094 * 27 18 17 29 29 H 1.09004 * 109.47100 * 59.99866 * 1 2 3 30 30 H 1.09003 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47410 * 299.99740 * 1 2 3 32 32 H 0.97001 * 119.99634 * 179.97438 * 7 6 4 33 33 H 1.08007 * 120.01094 * 0.05138 * 16 15 13 34 34 H 0.97007 * 120.00054 * 185.68188 * 19 18 17 35 35 H 1.09002 * 109.47036 * 59.99608 * 24 23 22 36 36 H 1.08995 * 109.46891 * 179.97438 * 24 23 22 37 37 H 1.09005 * 109.46779 * 300.00113 * 24 23 22 38 38 H 1.09003 * 109.47285 * 59.99861 * 25 23 22 39 39 H 1.09005 * 109.47096 * 179.97438 * 25 23 22 40 40 H 1.08999 * 109.47120 * 299.99579 * 25 23 22 41 41 H 1.08993 * 109.47593 * 60.00107 * 26 23 22 42 42 H 1.09005 * 109.46933 * 180.02562 * 26 23 22 43 43 H 1.09003 * 109.47202 * 300.00023 * 26 23 22 44 44 H 1.08002 * 119.98388 * 179.71812 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.8073 -1.1191 4.0078 10 1 1.8268 -0.4201 5.2205 11 1 1.8279 -2.5199 4.0080 12 8 2.0140 -0.6843 -1.1855 13 6 2.2179 0.0669 -2.2851 14 8 1.9969 1.2609 -2.2544 15 6 2.7104 -0.5616 -3.5284 16 6 2.9211 0.2158 -4.6674 17 7 3.3606 -0.3468 -5.7778 18 6 3.6012 -1.6516 -5.8104 19 7 4.0631 -2.2431 -6.9790 20 6 4.3708 -1.4785 -8.0453 21 8 4.1616 -0.2821 -8.0155 22 8 4.9098 -2.0405 -9.1436 23 6 5.2152 -1.1564 -10.2542 24 6 6.2196 -0.0953 -9.8001 25 6 5.8155 -1.9693 -11.4029 26 6 3.9316 -0.4731 -10.7299 27 6 3.3846 -2.4315 -4.6713 28 7 2.9520 -1.8715 -3.5628 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.7082 1.1608 3.4844 33 1 2.7252 1.2776 -4.6405 34 1 4.1605 -3.2070 -7.0290 35 1 7.1341 -0.5822 -9.4612 36 1 6.4492 0.5680 -10.6340 37 1 5.7915 0.4837 -8.9818 38 1 5.0996 -2.7249 -11.7263 39 1 6.0444 -1.3056 -12.2369 40 1 6.7299 -2.4564 -11.0643 41 1 3.5034 0.1059 -9.9117 42 1 4.1607 0.1903 -11.5639 43 1 3.2160 -1.2290 -11.0533 44 1 3.5764 -3.4940 -4.7001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496780426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:03 Heat of formation + Delta-G solvation = -123.075216 kcal Electronic energy + Delta-G solvation = -28518.590438 eV Core-core repulsion = 24243.655189 eV Total energy + Delta-G solvation = -4274.935249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.83210 -41.85398 -40.97615 -38.73790 -37.66035 -36.54771 -35.56218 -35.23415 -34.86908 -32.22191 -31.38490 -28.37010 -28.28510 -27.46697 -27.11117 -26.09618 -24.20836 -23.33234 -21.89854 -21.40381 -19.93601 -19.40115 -19.18511 -18.62667 -17.98331 -17.64284 -17.60749 -17.24044 -17.02143 -16.56365 -15.99692 -15.93203 -15.69090 -15.32419 -15.27797 -14.70020 -14.50475 -14.25101 -13.89859 -13.46039 -13.36240 -13.20510 -13.00531 -12.94833 -12.90942 -12.85482 -12.83897 -12.80053 -12.46408 -12.38097 -12.33421 -12.17021 -11.95690 -11.85726 -11.59707 -11.42718 -11.28743 -11.00985 -10.58839 -10.29634 -9.86434 -8.27218 -6.43780 -0.95127 -0.13092 0.62764 1.20554 1.42775 1.47443 1.54594 1.67390 1.73680 2.39004 2.46152 2.56151 2.92284 2.96151 3.03384 3.30677 3.68136 3.72536 3.78276 3.89421 3.93304 4.34718 4.42474 4.51292 4.57206 4.62397 4.74667 4.77763 4.79162 4.81980 4.86017 4.89849 5.05486 5.12030 5.19960 5.28627 5.29973 5.40277 5.47434 5.60678 5.70311 5.84526 6.01828 6.09746 6.43900 6.59336 6.85960 7.11736 7.26658 8.80394 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.001964 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.541584 B =14250.126384 C =14602.592390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.214 3.786 3 H 0.013 0.987 4 C -0.547 4.547 5 H 0.067 0.933 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.984 3.016 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.264 1.264 12 O -0.340 6.340 13 C 0.514 3.486 14 O -0.534 6.534 15 C -0.009 4.009 16 C 0.160 3.840 17 N -0.459 5.459 18 C 0.359 3.641 19 N -0.608 5.608 20 C 0.638 3.362 21 O -0.525 6.525 22 O -0.354 6.354 23 C 0.128 3.872 24 C -0.183 4.183 25 C -0.135 4.135 26 C -0.182 4.182 27 C 0.056 3.944 28 N -0.381 5.381 29 H 0.025 0.975 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.271 0.729 33 H 0.190 0.810 34 H 0.450 0.550 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -10.423 -29.105 32.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.585 4.585 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.807 3.193 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.188 1.188 12 O -0.255 6.255 13 C 0.357 3.643 14 O -0.425 6.425 15 C -0.145 4.145 16 C 0.001 3.999 17 N -0.179 5.179 18 C 0.120 3.880 19 N -0.263 5.263 20 C 0.391 3.609 21 O -0.409 6.409 22 O -0.269 6.269 23 C 0.092 3.908 24 C -0.240 4.240 25 C -0.192 4.192 26 C -0.239 4.239 27 C -0.115 4.115 28 N -0.096 5.096 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.207 0.793 34 H 0.294 0.706 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.670 -9.291 -29.048 31.994 hybrid contribution -0.027 -0.012 0.984 0.984 sum 9.642 -9.303 -28.064 31.099 Atomic orbital electron populations 1.21995 0.96505 1.00461 1.01013 1.20494 0.92246 0.92302 0.78851 0.96945 1.21230 1.33512 1.13947 0.89803 0.91514 1.25835 0.94727 0.95706 1.02083 1.70007 1.36453 1.23581 1.25318 0.85212 0.78739 0.78631 0.76689 1.19397 1.20134 1.18826 1.86643 1.75359 1.42697 1.20767 1.20941 0.74269 0.84651 0.84400 1.90780 1.50188 1.16653 1.84852 1.20798 1.08063 0.92091 0.93544 1.23692 0.88955 1.02046 0.85171 1.68688 1.13409 1.10162 1.25656 1.19762 0.90707 0.90496 0.87009 1.41767 1.64177 1.12339 1.08003 1.18327 0.77382 0.84140 0.81054 1.91078 1.54322 1.14141 1.81342 1.86330 1.74511 1.42743 1.23295 1.22497 0.95677 0.89613 0.83045 1.22497 0.98664 0.99233 1.03608 1.21895 1.01600 1.00764 0.94931 1.22493 0.96823 1.01726 1.02905 1.24142 0.98916 1.03525 0.84945 1.68441 1.04748 1.09793 1.26665 0.95625 0.93611 0.89753 0.91933 0.79309 0.70632 0.91674 0.89072 0.92275 0.90757 0.88052 0.90869 0.92243 0.89096 0.91515 0.74880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.51 9.33 71.98 0.67 -6.83 16 2 C 0.21 12.14 2.56 29.85 0.08 12.21 16 3 H 0.01 0.80 7.16 -2.39 -0.02 0.78 16 4 C -0.55 -31.80 8.90 25.60 0.23 -31.57 16 5 H 0.07 3.81 7.81 -2.91 -0.02 3.79 16 6 C 0.02 0.91 5.30 84.66 0.45 1.36 16 7 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 8 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 12 O -0.34 -17.44 9.69 -56.31 -0.55 -17.98 16 13 C 0.51 23.38 7.92 70.34 0.56 23.94 16 14 O -0.53 -26.29 15.59 19.94 0.31 -25.98 16 15 C -0.01 -0.31 6.74 41.75 0.28 -0.03 16 16 C 0.16 4.96 10.76 84.97 0.91 5.88 16 17 N -0.46 -12.95 8.03 -191.46 -1.54 -14.48 16 18 C 0.36 7.51 7.43 133.16 0.99 8.50 16 19 N -0.61 -8.74 5.38 -434.12 -2.34 -11.08 16 20 C 0.64 12.45 8.01 129.79 1.04 13.49 16 21 O -0.53 -13.94 10.15 19.86 0.20 -13.74 16 22 O -0.35 -5.42 9.94 -55.40 -0.55 -5.97 16 23 C 0.13 1.64 1.13 -10.80 -0.01 1.63 16 24 C -0.18 -2.59 8.37 71.98 0.60 -1.99 16 25 C -0.13 -0.87 8.85 71.98 0.64 -0.23 16 26 C -0.18 -2.51 8.37 71.98 0.60 -1.91 16 27 C 0.06 1.09 11.08 85.11 0.94 2.03 16 28 N -0.38 -11.74 10.26 -183.87 -1.89 -13.63 16 29 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.08 4.73 6.07 -2.38 -0.01 4.71 16 32 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.19 5.62 7.64 -2.91 -0.02 5.60 16 34 H 0.45 2.18 8.81 -92.70 -0.82 1.36 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 1.24 5.88 -2.38 -0.01 1.23 16 38 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 1.22 5.88 -2.39 -0.01 1.20 16 42 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -77.85 374.88 4.14 -73.72 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.23 Total: 10.05 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 7.98 Total: 26.48 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -5.52 Total: -92.00 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -0.58 Total: -63.67 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -77.85 4.14 -73.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496780426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.360 kcal (2) G-P(sol) polarization free energy of solvation -77.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds