Wall clock time and date at job start Tue Mar 31 2020 20:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.50329 * 2 1 4 4 C 1.53046 * 109.48967 * 239.94321 * 2 1 3 5 5 N 1.46957 * 109.38065 * 181.64023 * 4 2 1 6 6 C 1.39680 * 111.01769 * 183.16835 * 5 4 2 7 7 C 1.38936 * 120.06734 * 292.23594 * 6 5 4 8 8 C 1.38089 * 119.95477 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.08364 * 359.97438 * 8 7 6 10 10 C 1.38386 * 120.13963 * 0.02562 * 9 8 7 11 11 Cl 1.73595 * 119.98167 * 180.02562 * 10 9 8 12 12 C 1.38244 * 120.04499 * 359.74402 * 10 9 8 13 13 C 1.46956 * 110.88202 * 59.28891 * 5 4 2 14 14 C 1.53049 * 109.37889 * 300.71439 * 13 5 4 15 15 N 1.46955 * 109.48785 * 120.04887 * 2 1 3 16 16 C 1.46896 * 111.00423 * 303.15949 * 15 2 1 17 17 C 1.50698 * 109.47514 * 170.15480 * 16 15 2 18 18 O 1.21295 * 119.99519 * 0.02562 * 17 16 15 19 19 N 1.34770 * 120.00423 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00158 * 180.02562 * 19 17 16 21 21 H 1.07997 * 119.99744 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99927 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99818 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00010 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47239 * 89.99654 * 24 22 20 26 26 H 1.48503 * 109.46702 * 209.99642 * 24 22 20 27 27 H 1.48501 * 109.46819 * 329.99553 * 24 22 20 28 28 H 1.09005 * 109.47198 * 299.94729 * 1 2 3 29 29 H 1.09001 * 109.47655 * 59.94859 * 1 2 3 30 30 H 1.09000 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.49193 * 301.60024 * 4 2 1 32 32 H 1.09002 * 109.49198 * 61.64289 * 4 2 1 33 33 H 1.08005 * 120.02438 * 359.97438 * 7 6 5 34 34 H 1.08000 * 119.95924 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.93316 * 180.02562 * 9 8 7 36 36 H 1.08004 * 120.04560 * 180.27419 * 12 10 9 37 37 H 1.09002 * 109.49189 * 180.73281 * 13 5 4 38 38 H 1.09002 * 109.48707 * 60.69040 * 13 5 4 39 39 H 1.09005 * 109.48797 * 178.36083 * 14 13 5 40 40 H 1.09006 * 109.49101 * 298.41852 * 14 13 5 41 41 H 1.09001 * 109.46837 * 290.15725 * 16 15 2 42 42 H 1.08999 * 109.46902 * 50.15299 * 16 15 2 43 43 H 0.97000 * 120.00087 * 0.02562 * 19 17 16 44 44 H 0.97009 * 119.99777 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0406 -0.7226 -1.2488 5 7 3.5096 -0.7557 -1.2266 6 6 4.0150 -1.3456 -2.3875 7 6 3.8130 -2.6995 -2.6250 8 6 4.3132 -3.2801 -3.7737 9 6 5.0144 -2.5157 -4.6881 10 6 5.2178 -1.1668 -4.4553 11 17 6.0980 -0.2108 -5.6062 12 6 4.7153 -0.5787 -3.3094 13 6 4.0000 -1.4490 -0.0273 14 6 3.4892 -0.7263 1.2215 15 7 2.0202 -0.6937 1.1992 16 6 1.4887 -0.0738 2.4203 17 6 1.8099 -0.9454 3.6069 18 8 2.4219 -1.9810 3.4507 19 7 1.4182 -0.5739 4.8418 20 6 1.7109 -1.3666 5.9213 21 1 2.2558 -2.2886 5.7823 22 6 1.3074 -0.9832 7.1945 23 7 1.5875 -1.7433 8.2292 24 14 0.3656 0.6120 7.4350 25 1 -1.0914 0.3483 7.3228 26 1 0.6662 1.1663 8.7796 27 1 0.7735 1.5894 6.3941 28 1 -0.3634 0.5130 0.8905 29 1 -0.3634 0.5146 -0.8895 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6544 -1.7418 -1.2627 32 1 1.7018 -0.1933 -2.1394 33 1 3.2651 -3.2974 -1.9118 34 1 4.1565 -4.3327 -3.9582 35 1 5.4041 -2.9722 -5.5859 36 1 4.8703 0.4749 -3.1298 37 1 5.0900 -1.4489 -0.0272 38 1 3.6363 -2.4765 -0.0271 39 1 3.8278 -1.2559 2.1121 40 1 3.8754 0.2929 1.2354 41 1 1.9429 0.9076 2.5568 42 1 0.4079 0.0352 2.3315 43 1 0.9291 0.2544 4.9667 44 1 1.3055 -1.4758 9.1180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573217701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:50 Heat of formation + Delta-G solvation = -7.811911 kcal Electronic energy + Delta-G solvation = -26610.719098 eV Core-core repulsion = 22781.491206 eV Total energy + Delta-G solvation = -3829.227892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50370 -40.43693 -39.23321 -37.56109 -36.38536 -35.85691 -33.74387 -33.35998 -31.95096 -31.40242 -29.34338 -28.09626 -26.78030 -25.03609 -23.95286 -23.48468 -22.20385 -21.26679 -20.62857 -20.15741 -18.53667 -17.84443 -17.12738 -16.86111 -16.72548 -16.53446 -16.31321 -16.04936 -15.69955 -15.55340 -15.08553 -15.00246 -14.68476 -14.47183 -14.37046 -14.17343 -13.80012 -13.72577 -13.13592 -13.07960 -12.90119 -12.79250 -12.65650 -12.50341 -12.41621 -12.39081 -12.08594 -12.04075 -11.95922 -11.88785 -11.50360 -11.44692 -10.34289 -10.22043 -9.92524 -9.74097 -9.56669 -9.20965 -8.39982 -6.00322 0.06635 0.23476 1.09478 1.30745 1.36117 1.44803 1.97205 2.23787 2.54688 2.56421 2.70960 3.14676 3.20765 3.73783 3.88750 3.94971 4.04835 4.09131 4.11174 4.21071 4.22816 4.31496 4.37393 4.40357 4.44123 4.46056 4.52418 4.67985 4.75714 4.83758 4.90080 4.96906 4.97551 5.13075 5.17192 5.29830 5.37889 5.41722 5.53834 5.57823 5.74469 5.90136 6.01670 6.21377 6.31143 6.61413 6.90214 7.41694 7.98929 8.77585 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.002185 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.715272 B =12811.393978 C =13083.453251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.083 3.917 3 H 0.055 0.945 4 C 0.074 3.926 5 N -0.506 5.506 6 C 0.093 3.907 7 C -0.151 4.151 8 C -0.094 4.094 9 C -0.114 4.114 10 C -0.036 4.036 11 Cl -0.068 7.068 12 C -0.094 4.094 13 C 0.076 3.924 14 C 0.060 3.940 15 N -0.530 5.530 16 C 0.051 3.949 17 C 0.453 3.547 18 O -0.604 6.604 19 N -0.593 5.593 20 C -0.324 4.324 21 H 0.056 0.944 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.232 1.232 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.155 0.845 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.125 0.875 43 H 0.389 0.611 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 7.186 -28.214 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.025 4.025 3 H 0.073 0.927 4 C -0.052 4.052 5 N -0.228 5.228 6 C -0.001 4.001 7 C -0.171 4.171 8 C -0.112 4.112 9 C -0.132 4.132 10 C -0.063 4.063 11 Cl -0.039 7.039 12 C -0.114 4.114 13 C -0.051 4.051 14 C -0.068 4.068 15 N -0.256 5.256 16 C -0.080 4.080 17 C 0.241 3.759 18 O -0.488 6.488 19 N -0.235 5.235 20 C -0.453 4.453 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.155 1.155 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.100 0.900 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.092 0.908 42 H 0.143 0.857 43 H 0.224 0.776 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.464 6.548 -28.197 28.984 hybrid contribution -0.117 0.394 1.046 1.124 sum 1.348 6.942 -27.151 28.057 Atomic orbital electron populations 1.21907 0.92280 1.02755 1.03398 1.21790 0.96542 0.95870 0.88282 0.92665 1.22272 0.84800 1.00024 0.98128 1.59769 1.09663 1.53184 1.00178 1.18745 0.98034 0.91449 0.91861 1.21940 1.00843 0.95518 0.98781 1.21266 0.96176 1.01171 0.92612 1.21348 0.99287 0.91509 1.01069 1.20910 0.99880 0.92861 0.92654 1.98376 1.74510 1.72048 1.58960 1.20918 0.97397 1.00993 0.92053 1.22059 0.99672 0.95539 0.87851 1.22151 0.87407 0.99174 0.98103 1.61736 1.08593 1.54125 1.01160 1.21896 1.03309 0.95002 0.87781 1.20847 0.82702 0.87992 0.84373 1.90510 1.44749 1.28033 1.85490 1.42043 1.52862 1.22469 1.06117 1.18977 1.35653 1.04688 0.86017 0.92625 1.26106 0.98582 1.02851 0.93971 1.69808 1.47453 1.40307 1.00035 0.85379 0.79149 0.77662 0.79425 1.18090 1.20158 1.15529 0.91362 0.89561 0.92583 0.94139 0.88380 0.85901 0.82702 0.82897 0.84332 0.89960 0.94461 0.91201 0.94220 0.90847 0.85742 0.77602 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.89 71.98 0.64 -1.92 16 2 C 0.08 1.83 2.56 44.92 0.12 1.94 16 3 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 4 C 0.07 1.54 4.68 86.31 0.40 1.95 16 5 N -0.51 -11.53 4.68 -694.81 -3.25 -14.78 16 6 C 0.09 1.92 4.72 38.21 0.18 2.10 16 7 C -0.15 -2.85 8.68 22.40 0.19 -2.65 16 8 C -0.09 -1.37 10.04 22.25 0.22 -1.15 16 9 C -0.11 -1.63 9.83 22.32 0.22 -1.41 16 10 C -0.04 -0.61 6.32 22.31 0.14 -0.47 16 11 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.16 16 12 C -0.09 -1.78 9.75 22.42 0.22 -1.57 16 13 C 0.08 2.05 5.26 86.31 0.45 2.50 16 14 C 0.06 1.89 5.26 86.31 0.45 2.35 16 15 N -0.53 -15.96 4.26 -875.05 -3.73 -19.69 16 16 C 0.05 1.58 5.21 85.56 0.45 2.02 16 17 C 0.45 20.31 7.48 87.66 0.66 20.96 16 18 O -0.60 -32.89 13.90 -3.08 -0.04 -32.94 16 19 N -0.59 -27.82 5.09 -306.99 -1.56 -29.39 16 20 C -0.32 -18.91 10.16 84.04 0.85 -18.05 16 21 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 23 N -0.94 -56.42 13.96 21.66 0.30 -56.12 16 24 Si 0.96 38.68 27.74 68.60 1.90 40.59 16 25 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 26 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 28 H 0.07 1.14 6.15 -2.38 -0.01 1.12 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 0.92 7.68 -2.39 -0.02 0.91 16 32 H 0.10 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.12 2.45 7.06 -2.91 -0.02 2.43 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.08 2.13 8.13 -2.39 -0.02 2.11 16 38 H 0.04 1.10 7.05 -2.39 -0.02 1.09 16 39 H 0.07 2.81 5.84 -2.38 -0.01 2.79 16 40 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 42 H 0.12 3.16 5.74 -2.39 -0.01 3.15 16 43 H 0.39 15.11 5.76 -92.71 -0.53 14.57 16 44 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -73.35 365.74 -0.36 -73.71 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.43 Total: 33.63 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.67 Total: 6.14 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -8.24 Total: -119.98 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.04 Total: -32.94 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.59 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -73.35 -0.36 -73.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573217701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.897 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds